#------------------------------------------------------------------------------ #$Date: 2009-11-16 01:43:51 +0000 (Mon, 16 Nov 2009) $ #$Revision: 853 $ #$URL: svn://www.crystallography.net/cod/cif/1/1100172.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1100172 _journal_name_full 'Acta Crystallographica, Section E' _journal_year 2004 _journal_volume 60 _journal_page_first o272 _journal_page_last o274 _publ_section_title ; D-Phenylglycinium nitrate ; _space_group_IT_number 4 _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _[local]_cod_cif_authors_sg_H-M 'P 21' loop_ _publ_author_name 'Bouchouit, Karim' 'Bendheif, Leulmi' 'Benali-Cherif, Nouredine' _chemical_name_systematic ; D-Phenylglycinium nitrate ; _chemical_name_common 'D-Phynylglycinium nitrate' _chemical_formula_moiety 'C8 H10 N O2 + , N O3 -' _chemical_formula_sum 'C8 H10 N2 O5' _chemical_formula_structural 'C8 H10 N2 O5' _chemical_formula_iupac 'C8 H10 N O2 + , N O3 -' _chemical_formula_weight 214.18 _symmetry_cell_setting monoclinic loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' _cell_length_a 10.4320(3) _cell_length_b 5.6450(2) _cell_length_c 16.7830(2) _cell_angle_alpha 90 _cell_angle_beta 94.943(3) _cell_angle_gamma 90 _cell_volume 984.65(5) _cell_formula_units_Z 4 _cell_measurement_reflns_used 3980 _cell_measurement_theta_min 1.96 _cell_measurement_theta_max 26.30 _cell_measurement_temperature 293(2) _exptl_crystal_description prism _exptl_crystal_colour colourless _exptl_crystal_size_max 0.25 _exptl_crystal_size_mid 0.20 _exptl_crystal_size_min 0.15 _exptl_crystal_density_diffrn 1.445 _exptl_crystal_density_meas 'not measured' _exptl_crystal_density_method 'not measured' _exptl_crystal_F_000 448 _exptl_absorpt_coefficient_mu 0.122 _exptl_absorpt_correction_type none _diffrn_ambient_temperature 293(2) _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_monochromator graphite _diffrn_measurement_device 'Nonius KappaCCD area-detector' _diffrn_measurement_method \f _diffrn_detector_area_resol_mean ? _diffrn_reflns_number 7185 _diffrn_reflns_av_R_equivalents 0.0686 _diffrn_reflns_av_sigmaI/netI 0.0929 _diffrn_reflns_theta_min 1.96 _diffrn_reflns_theta_max 26.30 _diffrn_reflns_theta_full 26.30 _diffrn_measured_fraction_theta_max 0.966 _diffrn_measured_fraction_theta_full 0.966 _diffrn_reflns_limit_h_min -12 _diffrn_reflns_limit_h_max 12 _diffrn_reflns_limit_k_min -6 _diffrn_reflns_limit_k_max 6 _diffrn_reflns_limit_l_min -20 _diffrn_reflns_limit_l_max 20 _diffrn_standards_number 0 _diffrn_standards_interval_count ? _diffrn_standards_interval_time ? _diffrn_standards_decay_% 0 _reflns_number_total 3752 _reflns_number_gt 2831 _reflns_threshold_expression I>2\s(I) _refine_ls_structure_factor_coef Fsqd _refine_ls_matrix_type full _refine_ls_R_factor_all 0.0858 _refine_ls_R_factor_gt 0.0563 _refine_ls_wR_factor_gt 0.1160 _refine_ls_wR_factor_ref 0.1381 _refine_ls_goodness_of_fit_ref 1.158 _refine_ls_restrained_S_all 1.158 _refine_ls_number_reflns 3752 _refine_ls_number_parameters 328 _refine_ls_number_restraints 1 _refine_ls_hydrogen_treatment mixed _refine_ls_weighting_scheme calc _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0724P)^2^] where P=(Fo^2^+2Fc^2^)/3' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _refine_ls_shift/su_max 0.004 _refine_ls_shift/su_mean 0.001 _refine_diff_density_max 0.246 _refine_diff_density_min -0.274 _refine_ls_extinction_method none _refine_ls_extinction_coef ? loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source 'C' 'C' 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' 'H' 'H' 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' 'N' 'N' 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' 'O' 'O' 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' ## 'ORTEP3 (Farrugia, 1997) and PLUTON (Spek, 1990)' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol C1A 0.1469(4) 0.4257(8) 0.4835(2) 0.0249(9) Uani d . 1 . . C C1B 0.1415(4) 0.7185(7) -0.0142(2) 0.0263(10) Uani d . 1 . . C C2A 0.1714(4) 0.2955(8) 0.5622(2) 0.0245(9) Uani d . 1 . . C H2 0.1462 0.1248 0.5531 0.014(9) Uiso d R 1 . . H C2B 0.1869(3) 0.5997(7) 0.0639(2) 0.0213(9) Uani d . 1 . . C H22 0.1759 0.4347 0.0539 0.032(12) Uiso d R 1 . . H C3A 0.3143(4) 0.2959(8) 0.5912(3) 0.0285(10) Uani d . 1 . . C C3B 0.3260(4) 0.6582(8) 0.0902(2) 0.0251(9) Uani d . 1 . . C C4A 0.3722(5) 0.4762(9) 0.6352(3) 0.0482(14) Uani d . 1 . . C H4 0.3345 0.6174 0.6443 0.048(14) Uiso d R 1 . . H C4B 0.3981(4) 0.4990(10) 0.1380(3) 0.0455(13) Uani d . 1 . . C H44 0.3606 0.3541 0.1508 0.032(12) Uiso d R 1 . . H C5A 0.5039(5) 0.4687(13) 0.6568(4) 0.0649(18) Uani d . 1 . . C H5 0.5389 0.6080 0.6802 0.061(17) Uiso d R 1 . . H C5B 0.5256(5) 0.5495(12) 0.1627(4) 0.0654(19) Uani d . 1 . . C H55 0.5668 0.4342 0.1966 0.069(18) Uiso d R 1 . . H C6A 0.5762(5) 0.2815(14) 0.6332(4) 0.0659(17) Uani d . 1 . . C H6 0.6636 0.2574 0.6490 0.13(3) Uiso d R 1 . . H C6B 0.5817(5) 0.7518(12) 0.1387(4) 0.0565(15) Uani d . 1 . . C H66 0.6694 0.7846 0.1531 0.070(18) Uiso d R 1 . . H C7A 0.5185(5) 0.1051(12) 0.5888(4) 0.0664(18) Uani d . 1 . . C H7 0.5581 -0.0329 0.5690 0.059(17) Uiso d R 1 . . H C7B 0.5107(5) 0.9092(12) 0.0901(4) 0.0589(16) Uani d . 1 . . C H77 0.5451 1.0546 0.0721 0.071(19) Uiso d R 1 . . H C8A 0.3882(5) 0.1093(10) 0.5671(3) 0.0500(14) Uani d . 1 . . C H8 0.3462 -0.0228 0.5437 0.049(15) Uiso d R 1 . . H C8B 0.3828(4) 0.8655(9) 0.0671(3) 0.0432(13) Uani d . 1 . . C H88 0.3309 0.9665 0.0323 0.046(14) Uiso d R 1 . . H N1A 0.0896(3) 0.3989(7) 0.6226(2) 0.0291(9) Uani d . 1 . . N H10 -0.0042 0.3649 0.6087 0.050(15) Uiso d R 1 . . H H11 0.1036 0.5605 0.6336 0.053(17) Uiso d R 1 . . H H12 0.1105 0.3164 0.6637 0.07(2) Uiso d R 1 . . H N1B 0.0990(3) 0.6691(6) 0.12531(19) 0.0245(8) Uani d . 1 . . N H100 0.0989 0.8453 0.1335 0.018(11) Uiso d R 1 . . H H110 0.0160 0.6233 0.1050 0.034(12) Uiso d R 1 . . H H120 0.1270 0.5971 0.1791 0.08(2) Uiso d R 1 . . H N2A 0.8659(3) 0.3989(6) 0.2635(2) 0.0284(8) Uani d . 1 . . N N2B 0.1387(3) 0.1677(6) 0.2384(2) 0.0277(8) Uani d . 1 . . N O1A 0.1060(3) 0.6267(6) 0.47733(18) 0.0381(8) Uani d . 1 . . O O1B 0.0802(3) 0.9000(6) -0.01840(17) 0.0342(8) Uani d . 1 . . O O2A 0.1759(3) 0.2876(7) 0.42532(18) 0.0449(9) Uani d . 1 . . O H 0.1607 0.3380 0.3724 0.039(14) Uiso d R 1 . . H O2B 0.1820(3) 0.6028(6) -0.07435(19) 0.0474(10) Uani d . 1 . . O H' 0.1647 0.6729 -0.1198 0.055(16) Uiso d R 1 . . H O3A 0.8728(3) 0.5946(6) 0.2296(2) 0.0452(9) Uani d . 1 . . O O3B 0.1315(3) -0.0109(6) 0.2801(2) 0.0428(9) Uani d . 1 . . O O4A 0.8454(4) 0.2135(6) 0.22480(19) 0.0492(10) Uani d . 1 . . O O4B 0.1270(4) 0.1552(6) 0.16386(17) 0.0424(9) Uani d . 1 . . O O5A 0.8820(3) 0.3867(6) 0.33787(19) 0.0438(9) Uani d . 1 . . O O5B 0.1552(3) 0.3716(5) 0.2692(2) 0.0368(8) Uani d . 1 . . O loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 C1A 0.020(2) 0.032(2) 0.023(2) -0.0022(17) 0.0011(17) 0.0021(17) C1B 0.023(2) 0.032(2) 0.024(2) 0.0016(17) 0.0000(17) 0.0002(17) C2A 0.023(2) 0.030(2) 0.020(2) -0.0011(17) 0.0021(17) -0.0019(17) C2B 0.021(2) 0.024(2) 0.018(2) 0.0022(16) 0.0007(16) 0.0021(15) C3A 0.032(2) 0.032(2) 0.021(2) 0.0014(18) 0.0028(19) 0.0072(18) C3B 0.022(2) 0.034(2) 0.019(2) 0.0014(17) 0.0002(16) 0.0013(18) C4A 0.039(3) 0.044(3) 0.060(4) 0.006(2) -0.008(2) -0.019(3) C4B 0.030(3) 0.052(3) 0.052(3) -0.001(2) -0.005(2) 0.023(3) C5A 0.047(4) 0.074(5) 0.071(5) -0.011(3) -0.013(3) -0.013(4) C5B 0.032(3) 0.082(4) 0.078(5) -0.002(3) -0.020(3) 0.039(4) C6A 0.032(3) 0.084(4) 0.080(5) 0.005(3) -0.006(3) 0.005(4) C6B 0.022(3) 0.077(4) 0.070(4) -0.008(3) -0.003(2) 0.010(4) C7A 0.035(3) 0.069(4) 0.096(5) 0.016(3) 0.010(3) -0.009(4) C7B 0.036(3) 0.055(3) 0.085(5) -0.017(3) 0.002(3) 0.019(3) C8A 0.044(3) 0.043(3) 0.064(4) 0.007(2) 0.005(3) -0.007(3) C8B 0.032(3) 0.041(3) 0.056(4) -0.003(2) -0.002(2) 0.016(2) N1A 0.031(2) 0.031(2) 0.026(2) -0.0006(16) 0.0073(16) 0.0015(18) N1B 0.029(2) 0.0260(17) 0.0181(19) -0.0045(15) 0.0009(14) 0.0030(15) N2A 0.0297(19) 0.033(2) 0.023(2) 0.0031(16) 0.0021(16) -0.0003(17) N2B 0.035(2) 0.0240(17) 0.024(2) 0.0007(15) 0.0025(15) 0.0012(16) O1A 0.0435(19) 0.0393(19) 0.0308(19) 0.0074(16) -0.0007(14) 0.0059(15) O1B 0.0377(18) 0.0392(18) 0.0248(17) 0.0136(14) -0.0024(13) 0.0070(13) O2A 0.066(2) 0.051(2) 0.0175(18) 0.0122(18) 0.0036(15) -0.0011(15) O2B 0.065(2) 0.057(2) 0.0213(18) 0.0336(19) 0.0078(15) 0.0072(15) O3A 0.045(2) 0.041(2) 0.050(2) 0.0010(16) 0.0034(16) 0.0170(17) O3B 0.068(2) 0.0303(19) 0.0308(19) 0.0023(15) 0.0082(16) 0.0128(14) O4A 0.083(3) 0.042(2) 0.0228(19) -0.0085(18) 0.0029(17) -0.0089(15) O4B 0.078(3) 0.0325(17) 0.0174(17) -0.0082(17) 0.0063(15) -0.0003(15) O5A 0.076(3) 0.0323(18) 0.0239(19) -0.0014(16) 0.0069(16) -0.0073(15) O5B 0.053(2) 0.0312(18) 0.0262(19) -0.0035(15) 0.0041(15) -0.0047(14) _geom_special_details ; All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. ; loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag C1A O1A . 1.213(5) ? C1A O2A . 1.306(5) ? C1A C2A . 1.514(6) ? C1B O1B . 1.207(5) ? C1B O2B . 1.303(5) ? C1B C2B . 1.512(5) ? C2A N1A . 1.499(5) ? C2A C3A . 1.528(5) ? C2A H2 . 1.0072 ? C2B N1B . 1.489(5) ? C2B C3B . 1.516(5) ? C2B H22 . 0.9512 ? C3A C4A . 1.367(6) ? C3A C8A . 1.385(7) ? C3B C8B . 1.382(6) ? C3B C4B . 1.384(6) ? C4A C5A . 1.391(7) ? C4A H4 . 0.9076 ? C4B C5B . 1.388(7) ? C4B H44 . 0.9392 ? C5A C6A . 1.376(9) ? C5A H5 . 0.9386 ? C5B C6B . 1.361(9) ? C5B H55 . 0.9428 ? C6A C7A . 1.354(9) ? C6A H6 . 0.9372 ? C6B C7B . 1.378(8) ? C6B H66 . 0.9440 ? C7A C8A . 1.377(7) ? C7A H7 . 0.9547 ? C7B C8B . 1.379(6) ? C7B H77 . 0.9553 ? C8A H8 . 0.9344 ? C8B H88 . 0.9511 ? N1A H10 . 1.0044 ? N1A H11 . 0.9397 ? N1A H12 . 0.8441 ? N1B H100 . 1.0040 ? N1B H110 . 0.9396 ? N1B H120 . 1.0105 ? N2A O4A . 1.241(5) ? N2A O5A . 1.246(5) ? N2A O3A . 1.248(5) ? N2B O3B . 1.234(5) ? N2B O4B . 1.248(4) ? N2B O5B . 1.268(5) ? O2A H . 0.9336 ? O2B H' . 0.8650 ? loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag O1A C1A O2A . . 126.6(4) ? O1A C1A C2A . . 124.1(4) ? O2A C1A C2A . . 109.3(4) ? O1B C1B O2B . . 125.8(4) ? O1B C1B C2B . . 123.6(4) ? O2B C1B C2B . . 110.6(3) ? N1A C2A C1A . . 109.7(3) ? N1A C2A C3A . . 112.4(3) ? C1A C2A C3A . . 111.4(3) ? N1A C2A H2 . . 108.7 ? C1A C2A H2 . . 108.0 ? C3A C2A H2 . . 106.5 ? N1B C2B C1B . . 108.5(3) ? N1B C2B C3B . . 111.9(3) ? C1B C2B C3B . . 112.1(3) ? N1B C2B H22 . . 107.9 ? C1B C2B H22 . . 104.9 ? C3B C2B H22 . . 111.3 ? C4A C3A C8A . . 119.5(4) ? C4A C3A C2A . . 123.1(4) ? C8A C3A C2A . . 117.2(4) ? C8B C3B C4B . . 119.2(4) ? C8B C3B C2B . . 121.7(4) ? C4B C3B C2B . . 119.1(4) ? C3A C4A C5A . . 119.9(5) ? C3A C4A H4 . . 124.5 ? C5A C4A H4 . . 114.6 ? C3B C4B C5B . . 119.9(5) ? C3B C4B H44 . . 118.8 ? C5B C4B H44 . . 121.2 ? C6A C5A C4A . . 120.2(6) ? C6A C5A H5 . . 124.1 ? C4A C5A H5 . . 115.0 ? C6B C5B C4B . . 120.6(5) ? C6B C5B H55 . . 124.9 ? C4B C5B H55 . . 114.4 ? C7A C6A C5A . . 119.6(5) ? C7A C6A H6 . . 115.1 ? C5A C6A H6 . . 125.1 ? C5B C6B C7B . . 119.5(5) ? C5B C6B H66 . . 121.4 ? C7B C6B H66 . . 119.1 ? C6A C7A C8A . . 121.0(5) ? C6A C7A H7 . . 127.4 ? C8A C7A H7 . . 111.6 ? C6B C7B C8B . . 120.6(5) ? C6B C7B H77 . . 122.9 ? C8B C7B H77 . . 116.5 ? C7A C8A C3A . . 119.8(5) ? C7A C8A H8 . . 120.9 ? C3A C8A H8 . . 118.5 ? C7B C8B C3B . . 120.1(5) ? C7B C8B H88 . . 123.4 ? C3B C8B H88 . . 116.4 ? C2A N1A H10 . . 111.6 ? C2A N1A H11 . . 114.9 ? H10 N1A H11 . . 111.3 ? C2A N1A H12 . . 102.4 ? H10 N1A H12 . . 105.2 ? H11 N1A H12 . . 110.6 ? C2B N1B H100 . . 111.3 ? C2B N1B H110 . . 106.2 ? H100 N1B H110 . . 108.1 ? C2B N1B H120 . . 111.4 ? H100 N1B H120 . . 106.3 ? H110 N1B H120 . . 113.6 ? O4A N2A O5A . . 118.7(4) ? O4A N2A O3A . . 121.5(4) ? O5A N2A O3A . . 119.8(4) ? O3B N2B O4B . . 121.2(3) ? O3B N2B O5B . . 121.5(4) ? O4B N2B O5B . . 117.3(3) ? C1A O2A H . . 119.9 ? C1B O2B H' . . 113.5 ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion _geom_torsion_publ_flag O1A C1A C2A N1A . . . . 24.1(5) ? O2A C1A C2A N1A . . . . -155.8(3) ? O1A C1A C2A C3A . . . . -101.2(4) ? O2A C1A C2A C3A . . . . 78.9(4) ? O1B C1B C2B N1B . . . . 25.4(4) ? O2B C1B C2B N1B . . . . -156.6(3) ? O1B C1B C2B C3B . . . . -98.6(4) ? O2B C1B C2B C3B . . . . 79.4(4) ? N1A C2A C3A C4A . . . . -37.6(5) ? C1A C2A C3A C4A . . . . 86.0(4) ? N1A C2A C3A C8A . . . . 146.1(4) ? C1A C2A C3A C8A . . . . -90.3(4) ? N1B C2B C3B C8B . . . . -95.9(4) ? C1B C2B C3B C8B . . . . 26.1(5) ? N1B C2B C3B C4B . . . . 84.8(4) ? C1B C2B C3B C4B . . . . -153.2(4) ? C8A C3A C4A C5A . . . . -1.3(7) ? C2A C3A C4A C5A . . . . -177.5(4) ? C8B C3B C4B C5B . . . . 0.6(7) ? C2B C3B C4B C5B . . . . 179.9(4) ? C3A C4A C5A C6A . . . . 1.0(8) ? C3B C4B C5B C6B . . . . -1.7(8) ? C4A C5A C6A C7A . . . . 0.1(9) ? C4B C5B C6B C7B . . . . 1.1(9) ? C5A C6A C7A C8A . . . . -0.8(9) ? C5B C6B C7B C8B . . . . 0.6(9) ? C6A C7A C8A C3A . . . . 0.4(8) ? C4A C3A C8A C7A . . . . 0.7(7) ? C2A C3A C8A C7A . . . . 177.1(4) ? C4B C3B C8B C7B . . . . 1.1(7) ? C2B C3B C8B C7B . . . . -178.2(4) ? C6B C7B C8B C3B . . . . -1.7(8) ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O2A H O3B 1_555 0.93 2.51 2.966(5) 110 O2A H O5B 1_555 0.93 1.74 2.653(5) 166 O2B H' O4A 2_655 0.87 1.77 2.593(5) 158 N1A H10 O1A 2_546 1.01 2.18 2.958(5) 133 N1A H10 O3B 2_556 1.01 2.48 2.982(5) 110 N1A H11 O4A 2_656 0.94 2.54 3.142(5) 122 N1A H11 O5A 2_656 0.94 1.91 2.842(5) 174 N1A H12 O3A 2_646 0.85 2.18 3.015(5) 170 N1A H12 O5A 2_646 0.85 2.43 2.976(5) 123 N1B H100 O3B 1_565 1.00 2.59 3.158(5) 116 N1B H100 O4B 1_565 1.00 1.84 2.829(5) 168 N1B H110 O1B 2_545 0.94 2.11 2.906(4) 142 N1B H120 O4B 1_555 1.01 2.51 2.981(5) 108 N1B H120 O5B 1_555 1.01 1.98 2.958(5) 163