#------------------------------------------------------------------------------ #$Date: 2009-11-16 01:43:51 +0000 (Mon, 16 Nov 2009) $ #$Revision: 853 $ #$URL: svn://www.crystallography.net/cod/cif/1/1101099.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1101099 _journal_name_full 'Struct. Chem.' _journal_page_first 541 _journal_page_last 549 _journal_volume '16 (5)' _journal_year 2005 _space_group_IT_number 5 _symmetry_space_group_name_Hall 'C 2y' _symmetry_space_group_name_H-M 'C 1 2 1' _[local]_cod_cif_authors_sg_H-M 'C 2' loop_ _publ_author_name 'Jarmula, Adam' 'Rypniewski, Wojciech R.' 'Felczak, Krzysztof' 'Rode, Wojciech' _chemical_name_common 3',5'-di-O-acetyl-N(4)-hydroxy-5-fluoro-2'-deoxycytidine _chemical_formula_moiety 'C13 H16 F N3 O7' _chemical_formula_sum 'C13 H16 F N3 O7' _chemical_formula_weight 345.29 _symmetry_cell_setting monoclinic loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y, -z' 'x+1/2, y+1/2, z' '-x+1/2, y+1/2, -z' _cell_length_a 21.72(3) _cell_length_b 8.720(10) _cell_length_c 8.610(10) _cell_angle_alpha 90.00 _cell_angle_beta 90.42(10) _cell_angle_gamma 90.00 _cell_volume 1631(3) _cell_formula_units_Z 4 _cell_measurement_temperature 293(2) _exptl_crystal_density_diffrn 1.406 _diffrn_ambient_temperature 293(2) _diffrn_ambient_pressure 101.3 loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags _atom_site_disorder_assembly _atom_site_disorder_group N3 N 0.21892(8) 0.1226(2) 0.33043(18) 0.0448(4) Uani 1 1 d . . . H3 H 0.2403 0.1747 0.3963 0.060(8) Uiso 1 1 calc R . . O2 O 0.20627(10) 0.3366(2) 0.18418(18) 0.0621(5) Uani 1 1 d . . . N1 N 0.16373(9) 0.1144(2) 0.09983(19) 0.0486(4) Uani 1 1 d . . . C4 C 0.21042(9) -0.0311(2) 0.3623(2) 0.0434(4) Uani 1 1 d . . . F F 0.16693(11) -0.26195(19) 0.2667(3) 0.0875(7) Uani 1 1 d . . . C2 C 0.19646(10) 0.1996(3) 0.2038(2) 0.0455(4) Uani 1 1 d . . . C6 C 0.15392(12) -0.0407(3) 0.1219(3) 0.0562(5) Uani 1 1 d . . . H6 H 0.1312 -0.0956 0.0487 0.100 Uiso 1 1 calc R . . O4 O 0.26328(8) 0.01184(19) 0.57383(17) 0.0561(4) Uani 1 1 d . . . H4 H 0.2793 -0.0300 0.6492 0.077(10) Uiso 1 1 calc R . . O4' O 0.07502(7) 0.1464(2) -0.04660(15) 0.0521(4) Uani 1 1 d . . . C1' C 0.13718(10) 0.1884(3) -0.0374(2) 0.0487(4) Uani 1 1 d . . . H11 H 0.1407 0.3001 -0.0276 0.063(8) Uiso 1 1 calc R . . N4 N 0.23149(8) -0.0975(2) 0.4852(2) 0.0491(4) Uani 1 1 d . . . O3'1 O 0.11369(10) 0.2898(3) -0.3744(2) 0.0729(6) Uani 1 1 d . . . C4' C 0.05667(11) 0.1227(3) -0.2048(2) 0.0525(5) Uani 1 1 d . . . H41 H 0.0272 0.2029 -0.2340 0.051(7) Uiso 1 1 calc R . . C2' C 0.16650(11) 0.1363(4) -0.1873(2) 0.0610(6) Uani 1 1 d . . . H21 H 0.1995 0.2049 -0.2173 0.090(11) Uiso 1 1 calc R . . H22 H 0.1828 0.0332 -0.1773 0.083(11) Uiso 1 1 calc R . . O5'1 O 0.06999(14) -0.1460(3) -0.1792(3) 0.0934(8) Uani 1 1 d . . . C3' C 0.11435(11) 0.1414(4) -0.3036(2) 0.0581(5) Uani 1 1 d . . . H31 H 0.1179 0.0596 -0.3811 0.063(8) Uiso 1 1 calc R . . C5' C 0.02548(15) -0.0298(4) -0.2192(4) 0.0711(7) Uani 1 1 d . . . H51 H -0.0094 -0.0350 -0.1496 0.067(9) Uiso 1 1 calc R . . H52 H 0.0107 -0.0449 -0.3247 0.083(10) Uiso 1 1 calc R . . C5 C 0.17629(11) -0.1123(3) 0.2451(3) 0.0548(5) Uani 1 1 d . . . C3'2 C 0.08712(12) 0.2977(6) -0.5160(3) 0.0796(11) Uani 1 1 d . . . O3'3 O 0.06940(16) 0.1854(6) -0.5837(3) 0.1252(15) Uani 1 1 d . . . C3'3 C 0.0841(2) 0.4595(8) -0.5710(7) 0.124(2) Uani 1 1 d . . . H331 H 0.1048 0.4681 -0.6688 0.22(4) Uiso 1 1 calc R . . H332 H 0.1037 0.5252 -0.4962 0.15(2) Uiso 1 1 calc R . . H333 H 0.0418 0.4894 -0.5837 0.23(4) Uiso 1 1 calc R . . C5'2 C 0.0480(5) -0.2878(6) -0.1718(9) 0.192(4) Uani 1 1 d . . . O5'3 O -0.0029(4) -0.3200(6) -0.2013(11) 0.267(5) Uani 1 1 d . . . C5'3 C 0.0932(7) -0.4009(7) -0.1162(15) 0.240(8) Uani 1 1 d . . . H531 H 0.0963 -0.3953 -0.0051 0.23(4) Uiso 1 1 calc R . . H532 H 0.1326 -0.3794 -0.1610 0.066(10) Uiso 1 1 calc R . . H533 H 0.0801 -0.5019 -0.1462 0.33(7) Uiso 1 1 calc R . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 N3 0.0570(8) 0.0419(8) 0.0350(7) -0.0004(6) -0.0229(6) -0.0014(7) O2 0.0975(12) 0.0442(8) 0.0441(8) 0.0040(6) -0.0359(8) -0.0129(9) N1 0.0665(9) 0.0408(8) 0.0381(7) -0.0005(6) -0.0281(7) 0.0008(8) C4 0.0499(8) 0.0420(9) 0.0380(8) 0.0020(7) -0.0173(6) 0.0024(8) F 0.1240(15) 0.0439(8) 0.0937(13) 0.0150(8) -0.0661(11) -0.0159(9) C2 0.0578(9) 0.0439(9) 0.0346(8) -0.0003(7) -0.0207(7) -0.0022(8) C6 0.0739(13) 0.0424(10) 0.0518(11) -0.0015(9) -0.0374(10) -0.0023(10) O4 0.0780(10) 0.0489(8) 0.0408(7) 0.0002(6) -0.0314(7) 0.0023(7) O4' 0.0548(7) 0.0687(10) 0.0324(6) -0.0047(6) -0.0166(5) 0.0064(7) C1' 0.0626(10) 0.0467(10) 0.0366(8) 0.0027(8) -0.0249(7) 0.0032(9) N4 0.0621(9) 0.0439(8) 0.0410(8) 0.0016(7) -0.0240(7) 0.0024(8) O3'1 0.0901(12) 0.0817(14) 0.0465(8) 0.0166(9) -0.0181(8) 0.0008(11) C4' 0.0615(10) 0.0579(12) 0.0378(8) -0.0033(9) -0.0258(8) 0.0079(10) C2' 0.0571(10) 0.0827(17) 0.0431(9) 0.0038(11) -0.0128(8) 0.0095(12) O5'1 0.130(2) 0.0585(12) 0.0908(15) -0.0188(11) -0.0558(14) 0.0132(13) C3' 0.0719(12) 0.0693(14) 0.0327(8) -0.0032(9) -0.0167(8) 0.0101(12) C5' 0.0819(16) 0.0670(15) 0.0636(14) -0.0037(12) -0.0383(13) -0.0033(14) C5 0.0686(12) 0.0383(10) 0.0570(12) 0.0033(8) -0.0318(10) -0.0034(9) C3'2 0.0543(11) 0.134(3) 0.0502(12) 0.0343(18) -0.0081(10) 0.0069(16) O3'3 0.121(2) 0.197(4) 0.0573(12) 0.017(2) -0.0490(13) -0.026(3) C3'3 0.0776(19) 0.172(6) 0.121(4) 0.098(4) 0.001(2) 0.018(3) C5'2 0.307(10) 0.057(2) 0.207(7) -0.022(3) -0.186(7) -0.007(4) O5'3 0.340(9) 0.095(3) 0.363(9) 0.044(4) -0.262(8) -0.088(4) C5'3 0.374(18) 0.068(3) 0.275(12) -0.052(5) -0.201(13) 0.054(6) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 _geom_bond_publ_flag N3 C2 1.368(3) . ? N3 C4 1.380(3) . ? N3 H3 0.8600 . ? O2 C2 1.226(3) . ? N1 C2 1.360(3) . ? N1 C6 1.383(3) . ? N1 C1' 1.462(3) . ? C4 N4 1.287(3) . ? C4 C5 1.435(3) . ? F C5 1.334(3) . ? C6 C5 1.320(3) . ? C6 H6 0.9300 . ? O4 N4 1.400(3) . ? O4 H4 0.8200 . ? O4' C1' 1.401(3) . ? O4' C4' 1.431(3) . ? C1' C2' 1.513(4) . ? C1' H11 0.9800 . ? O3'1 C3'2 1.347(4) . ? O3'1 C3' 1.431(4) . ? C4' C5' 1.497(4) . ? C4' C3' 1.528(4) . ? C4' H41 0.9800 . ? C2' C3' 1.507(4) . ? C2' H21 0.9700 . ? C2' H22 0.9700 . ? O5'1 C5'2 1.327(7) . ? O5'1 C5' 1.441(4) . ? C3' H31 0.9800 . ? C5' H51 0.9700 . ? C5' H52 0.9700 . ? C3'2 O3'3 1.202(6) . ? C3'2 C3'3 1.490(7) . ? C3'3 H331 0.9600 . ? C3'3 H332 0.9600 . ? C3'3 H333 0.9600 . ? C5'2 O5'3 1.167(10) . ? C5'2 C5'3 1.468(11) . ? C5'3 H531 0.9600 . ? C5'3 H532 0.9600 . ? C5'3 H533 0.9600 . ?