#------------------------------------------------------------------------------ #$Date: 2012-07-07 13:44:20 +0100 (Sat, 07 Jul 2012) $ #$Revision: 62276 $ #$URL: svn://www.crystallography.net/cod/cif/1/50/77/1507788.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1507788 loop_ _publ_author_name 'Wilson, Justin J.' 'Lippard, Stephen J.' _publ_section_title ; In Vitro Anticancer Activity of cis-Diammineplatinum(II) Complexes with \b-Diketonate Leaving Group Ligands. ; _journal_issue 11 _journal_name_full 'Journal of medicinal chemistry' _journal_page_first 5326 _journal_page_last 5336 _journal_volume 55 _journal_year 2012 _chemical_formula_sum 'C10 H15 N3 O5 Pt' _chemical_formula_weight 452.34 _chemical_name_common 'Compound 3' _chemical_name_systematic ; ? ; _space_group_IT_number 29 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2c -2ac' _symmetry_space_group_name_H-M 'P c a 21' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 9.4898(12) _cell_length_b 15.218(2) _cell_length_c 8.9436(12) _cell_measurement_reflns_used 9990 _cell_measurement_temperature 100(2) _cell_measurement_theta_max 29.05 _cell_measurement_theta_min 2.68 _cell_volume 1291.6(3) _computing_cell_refinement 'Bruker SMART' _computing_data_collection 'Bruker SMART' _computing_data_reduction 'Bruker SAINT' _computing_molecular_graphics 'Bruker SHELXTL' _computing_publication_material 'Bruker SHELXTL' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 100(2) _diffrn_measured_fraction_theta_full 0.998 _diffrn_measured_fraction_theta_max 0.998 _diffrn_measurement_device_type 'CCD area detector' _diffrn_measurement_method 'phi and omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0302 _diffrn_reflns_av_sigmaI/netI 0.0215 _diffrn_reflns_limit_h_max 12 _diffrn_reflns_limit_h_min -12 _diffrn_reflns_limit_k_max 20 _diffrn_reflns_limit_k_min -20 _diffrn_reflns_limit_l_max 12 _diffrn_reflns_limit_l_min -12 _diffrn_reflns_number 25499 _diffrn_reflns_theta_full 29.06 _diffrn_reflns_theta_max 29.06 _diffrn_reflns_theta_min 2.53 _exptl_absorpt_coefficient_mu 10.884 _exptl_absorpt_correction_T_max 0.6121 _exptl_absorpt_correction_T_min 0.3110 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'Blessing, 1995' _exptl_crystal_colour 'pale yellow' _exptl_crystal_density_diffrn 2.326 _exptl_crystal_density_meas 'not measured' _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 856 _exptl_crystal_size_max 0.14 _exptl_crystal_size_mid 0.10 _exptl_crystal_size_min 0.05 _refine_diff_density_max 0.879 _refine_diff_density_min -0.532 _refine_diff_density_rms 0.081 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack 0.011(7) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.062 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 176 _refine_ls_number_reflns 3436 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.062 _refine_ls_R_factor_all 0.0144 _refine_ls_R_factor_gt 0.0131 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0000P)^2^+0.8329P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0285 _refine_ls_wR_factor_ref 0.0289 _reflns_number_gt 3242 _reflns_number_total 3436 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file jm3002857_si_002.cif _[local]_cod_data_source_block Compound_3 _[local]_cod_cif_authors_sg_H-M Pca2(1) _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1891 2012-01-12 08:04:46Z andrius ; _cod_database_code 1507788 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, z+1/2' 'x+1/2, -y, z' '-x+1/2, y, z+1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags Pt1 Pt 0.125777(9) 0.168705(5) -0.06366(6) 0.01041(3) Uani 1 1 d . C8 C -0.2274(2) 0.44336(16) 0.4282(4) 0.0169(5) Uani 1 1 d . H8A H -0.2900 0.4720 0.4951 0.020 Uiso 1 1 calc R O1 O 0.30999(18) 0.22339(12) -0.0096(2) 0.0125(4) Uani 1 1 d . C3 C 0.2071(3) 0.32970(17) 0.1546(3) 0.0130(5) Uani 1 1 d . H3A H 0.2303 0.3790 0.2151 0.016 Uiso 1 1 calc R O2 O 0.01060(18) 0.24648(12) 0.0671(2) 0.0129(4) Uani 1 1 d . C7 C -0.1093(3) 0.4868(2) 0.3740(3) 0.0166(5) Uani 1 1 d . H7A H -0.0925 0.5460 0.4029 0.020 Uiso 1 1 calc R C4 C 0.0647(3) 0.30768(19) 0.1450(3) 0.0126(5) Uani 1 1 d . C2 C 0.3192(3) 0.28654(17) 0.0842(3) 0.0114(5) Uani 1 1 d . C5 C -0.0394(3) 0.35870(18) 0.2372(3) 0.0118(5) Uani 1 1 d . C10 C -0.1605(3) 0.3145(2) 0.2879(3) 0.0149(5) Uani 1 1 d . H10 H -0.1792 0.2559 0.2573 0.018 Uiso 1 1 calc R C9 C -0.2525(3) 0.35813(19) 0.3837(3) 0.0165(5) Uani 1 1 d . H9A H -0.3341 0.3286 0.4190 0.020 Uiso 1 1 calc R C6 C -0.0161(3) 0.44541(18) 0.2791(3) 0.0137(5) Uani 1 1 d . H6A H 0.0639 0.4761 0.2423 0.016 Uiso 1 1 calc R N1 N 0.2368(2) 0.08846(15) -0.2022(3) 0.0141(4) Uani 1 1 d . H1A H 0.2265 0.1070 -0.2983 0.021 Uiso 1 1 calc R H1B H 0.2040 0.0325 -0.1937 0.021 Uiso 1 1 calc R H1C H 0.3296 0.0900 -0.1767 0.021 Uiso 1 1 calc R N2 N -0.0596(2) 0.10879(15) -0.1131(2) 0.0148(5) Uani 1 1 d . H2A H -0.0549 0.0512 -0.0863 0.022 Uiso 1 1 calc R H2B H -0.0762 0.1129 -0.2131 0.022 Uiso 1 1 calc R H2C H -0.1307 0.1354 -0.0622 0.022 Uiso 1 1 calc R C1 C 0.4665(3) 0.31560(19) 0.1226(3) 0.0146(5) Uani 1 1 d . H1D H 0.5341 0.2717 0.0867 0.022 Uiso 1 1 calc R H1E H 0.4754 0.3217 0.2313 0.022 Uiso 1 1 calc R H1F H 0.4859 0.3723 0.0748 0.022 Uiso 1 1 calc R N3 N 0.5749(3) 0.08948(19) -0.0058(3) 0.0168(6) Uani 1 1 d . O3 O 0.6692(2) 0.12958(16) 0.0667(3) 0.0262(5) Uani 1 1 d . O4 O 0.5842(3) 0.08358(18) -0.1453(3) 0.0227(6) Uani 1 1 d . O5 O 0.4735(2) 0.05612(13) 0.0619(2) 0.0211(4) Uani 1 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Pt1 0.01146(4) 0.00940(4) 0.01038(4) -0.00026(8) -0.00120(5) -0.00073(3) C8 0.0140(10) 0.0238(12) 0.0129(11) 0.0021(16) -0.0023(14) 0.0066(9) O1 0.0112(8) 0.0127(9) 0.0136(8) -0.0011(7) 0.0007(7) -0.0010(7) C3 0.0138(12) 0.0110(14) 0.0142(13) -0.0030(9) -0.0005(9) -0.0019(9) O2 0.0110(8) 0.0128(9) 0.0149(8) -0.0027(8) 0.0002(7) -0.0014(7) C7 0.0183(13) 0.0147(14) 0.0168(12) -0.0016(11) -0.0047(10) 0.0038(11) C4 0.0132(12) 0.0104(13) 0.0141(13) 0.0017(10) 0.0010(10) 0.0020(10) C2 0.0125(11) 0.0111(13) 0.0106(11) 0.0031(9) -0.0009(10) -0.0014(9) C5 0.0113(12) 0.0125(13) 0.0116(12) 0.0001(10) -0.0011(9) 0.0031(10) C10 0.0128(12) 0.0171(14) 0.0149(13) -0.0018(11) -0.0025(10) -0.0012(10) C9 0.0108(11) 0.0224(15) 0.0162(11) 0.0019(10) 0.0002(9) -0.0003(11) C6 0.0130(12) 0.0147(13) 0.0135(12) 0.0020(10) -0.0027(10) 0.0009(10) N1 0.0144(10) 0.0141(12) 0.0138(10) -0.0008(9) -0.0002(9) -0.0003(9) N2 0.0144(10) 0.0137(12) 0.0162(10) -0.0020(8) -0.0016(8) -0.0003(9) C1 0.0104(12) 0.0165(13) 0.0170(13) -0.0009(10) 0.0003(10) -0.0009(10) N3 0.0181(13) 0.0141(15) 0.0183(11) -0.0055(11) -0.0007(11) 0.0052(12) O3 0.0174(10) 0.0373(14) 0.0238(11) -0.0109(10) -0.0017(9) -0.0042(10) O4 0.0320(13) 0.0234(15) 0.0127(11) -0.0016(9) 0.0012(9) 0.0026(12) O5 0.0200(10) 0.0189(11) 0.0246(10) -0.0040(9) 0.0069(9) 0.0000(8) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Pt Pt -1.7033 8.3905 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle O2 Pt1 O1 95.20(7) O2 Pt1 N2 85.37(8) O1 Pt1 N2 177.62(9) O2 Pt1 N1 177.79(8) O1 Pt1 N1 86.81(8) N2 Pt1 N1 92.65(9) C9 C8 C7 119.2(3) C9 C8 H8A 120.4 C7 C8 H8A 120.4 C2 O1 Pt1 122.14(16) C4 C3 C2 126.6(2) C4 C3 H3A 116.7 C2 C3 H3A 116.7 C4 O2 Pt1 122.40(17) C6 C7 C8 121.0(3) C6 C7 H7A 119.5 C8 C7 H7A 119.5 O2 C4 C3 126.9(2) O2 C4 C5 114.5(2) C3 C4 C5 118.6(3) O1 C2 C3 126.6(2) O1 C2 C1 115.7(2) C3 C2 C1 117.7(2) C6 C5 C10 119.8(2) C6 C5 C4 122.3(3) C10 C5 C4 117.8(3) C9 C10 C5 118.9(3) C9 C10 H10 120.6 C5 C10 H10 120.6 C8 C9 C10 121.2(3) C8 C9 H9A 119.4 C10 C9 H9A 119.4 C7 C6 C5 119.9(3) C7 C6 H6A 120.1 C5 C6 H6A 120.1 Pt1 N1 H1A 109.5 Pt1 N1 H1B 109.5 H1A N1 H1B 109.5 Pt1 N1 H1C 109.5 H1A N1 H1C 109.5 H1B N1 H1C 109.5 Pt1 N2 H2A 109.5 Pt1 N2 H2B 109.5 H2A N2 H2B 109.5 Pt1 N2 H2C 109.5 H2A N2 H2C 109.5 H2B N2 H2C 109.5 C2 C1 H1D 109.5 C2 C1 H1E 109.5 H1D C1 H1E 109.5 C2 C1 H1F 109.5 H1D C1 H1F 109.5 H1E C1 H1F 109.5 O5 N3 O4 120.6(3) O5 N3 O3 119.7(3) O4 N3 O3 119.7(4) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance Pt1 O2 1.9907(18) Pt1 O1 1.9956(17) Pt1 N2 2.030(2) Pt1 N1 2.034(2) C8 C9 1.377(4) C8 C7 1.388(4) C8 H8A 0.9500 O1 C2 1.279(3) C3 C4 1.395(4) C3 C2 1.400(4) C3 H3A 0.9500 O2 C4 1.272(3) C7 C6 1.379(4) C7 H7A 0.9500 C4 C5 1.502(4) C2 C1 1.506(4) C5 C6 1.389(4) C5 C10 1.407(4) C10 C9 1.391(4) C10 H10 0.9500 C9 H9A 0.9500 C6 H6A 0.9500 N1 H1A 0.9100 N1 H1B 0.9100 N1 H1C 0.9100 N2 H2A 0.9100 N2 H2B 0.9100 N2 H2C 0.9100 C1 H1D 0.9800 C1 H1E 0.9800 C1 H1F 0.9800 N3 O5 1.246(4) N3 O4 1.253(3) N3 O3 1.262(4)