#------------------------------------------------------------------------------ #$Date: 2015-01-23 12:30:19 +0000 (Fri, 23 Jan 2015) $ #$Revision: 130086 $ #$URL: svn://www.crystallography.net/cod/cif/1/50/77/1507789.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1507789 loop_ _publ_author_name 'Wilson, Justin J.' 'Lippard, Stephen J.' _publ_section_title ; In Vitro Anticancer Activity of cis-Diammineplatinum(II) Complexes with \b-Diketonate Leaving Group Ligands. ; _journal_issue 11 _journal_name_full 'Journal of medicinal chemistry' _journal_page_first 5326 _journal_page_last 5336 _journal_paper_doi 10.1021/jm3002857 _journal_volume 55 _journal_year 2012 _chemical_formula_sum 'C10 H12 F3 N3 O5 Pt' _chemical_formula_weight 506.32 _chemical_name_common 'Compound 4' _chemical_name_systematic ; ? ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 100.556(2) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 18.336(2) _cell_length_b 7.1871(9) _cell_length_c 10.8106(13) _cell_measurement_reflns_used 8739 _cell_measurement_temperature 100(2) _cell_measurement_theta_max 28.33 _cell_measurement_theta_min 2.26 _cell_volume 1400.5(3) _computing_cell_refinement 'Bruker SMART' _computing_data_collection 'Bruker SMART' _computing_data_reduction 'Bruker SAINT' _computing_molecular_graphics 'Bruker SHELXTL' _computing_publication_material 'Bruker SHELXTL' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 100(2) _diffrn_measured_fraction_theta_full 0.994 _diffrn_measured_fraction_theta_max 0.994 _diffrn_measurement_device_type 'CCD area detector' _diffrn_measurement_method 'phi and omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0444 _diffrn_reflns_av_sigmaI/netI 0.0274 _diffrn_reflns_limit_h_max 24 _diffrn_reflns_limit_h_min -24 _diffrn_reflns_limit_k_max 9 _diffrn_reflns_limit_k_min -9 _diffrn_reflns_limit_l_max 14 _diffrn_reflns_limit_l_min -14 _diffrn_reflns_number 26078 _diffrn_reflns_theta_full 28.48 _diffrn_reflns_theta_max 28.48 _diffrn_reflns_theta_min 2.26 _exptl_absorpt_coefficient_mu 10.081 _exptl_absorpt_correction_T_max 0.7519 _exptl_absorpt_correction_T_min 0.6326 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'Blessing, 1995' _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 2.401 _exptl_crystal_density_meas ? _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 952 _exptl_crystal_size_max 0.05 _exptl_crystal_size_mid 0.05 _exptl_crystal_size_min 0.03 _refine_diff_density_max 0.959 _refine_diff_density_min -0.765 _refine_diff_density_rms 0.139 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.045 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 201 _refine_ls_number_reflns 3530 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.045 _refine_ls_R_factor_all 0.0278 _refine_ls_R_factor_gt 0.0194 _refine_ls_shift/su_max 0.005 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0136P)^2^+1.5249P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0367 _refine_ls_wR_factor_ref 0.0391 _reflns_number_gt 3006 _reflns_number_total 3530 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file jm3002857_si_002.cif _[local]_cod_data_source_block Compound_4 _[local]_cod_cif_authors_sg_H-M P2(1)/c _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1891 2012-01-12 08:04:46Z andrius The following automatic conversions were performed: '_exptl_crystal_density_meas' value 'not measured' was changed to '?' - the value is perceived as not measured. Automatic conversion script Id: cif_fix_values 3008 2015-01-20 13:52:24Z robertas ; _cod_database_code 1507789 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags Pt1 Pt 0.694354(7) 0.565488(17) 0.282382(10) 0.00998(4) Uani 1 1 d . O1 O 0.79973(12) 0.5590(3) 0.25603(19) 0.0140(5) Uani 1 1 d . N2 N 0.58778(14) 0.5543(4) 0.3049(2) 0.0133(5) Uani 1 1 d . H2A H 0.5841 0.4791 0.3712 0.020 Uiso 1 1 calc R H2B H 0.5592 0.5080 0.2338 0.020 Uiso 1 1 calc R H2C H 0.5719 0.6707 0.3199 0.020 Uiso 1 1 calc R O2 O 0.72038(12) 0.5367(3) 0.4681(2) 0.0142(5) Uani 1 1 d . N1 N 0.66166(15) 0.5987(4) 0.0952(2) 0.0144(6) Uani 1 1 d . H1A H 0.6447 0.4883 0.0599 0.022 Uiso 1 1 calc R H1B H 0.7008 0.6377 0.0609 0.022 Uiso 1 1 calc R H1C H 0.6248 0.6849 0.0802 0.022 Uiso 1 1 calc R C2 C 0.85176(18) 0.5275(5) 0.3486(3) 0.0165(7) Uani 1 1 d . C4 C 0.78575(18) 0.5110(4) 0.5293(3) 0.0122(6) Uani 1 1 d . C3 C 0.84987(19) 0.5063(5) 0.4747(3) 0.0170(7) Uani 1 1 d . H3 H 0.8959 0.4868 0.5298 0.020 Uiso 1 1 calc R C10 C 0.72634(19) 0.4358(5) 0.7111(3) 0.0154(6) Uani 1 1 d . H10 H 0.6810 0.4189 0.6536 0.019 Uiso 1 1 calc R C5 C 0.79080(18) 0.4842(4) 0.6664(3) 0.0121(6) Uani 1 1 d . C6 C 0.85677(19) 0.5091(5) 0.7527(3) 0.0173(7) Uani 1 1 d . H6 H 0.9010 0.5406 0.7235 0.021 Uiso 1 1 calc R C8 C 0.7942(2) 0.4397(5) 0.9230(3) 0.0195(7) Uani 1 1 d . H8 H 0.7955 0.4252 1.0107 0.023 Uiso 1 1 calc R C9 C 0.7287(2) 0.4125(5) 0.8392(3) 0.0179(7) Uani 1 1 d . H9 H 0.6851 0.3777 0.8692 0.021 Uiso 1 1 calc R C7 C 0.8580(2) 0.4881(5) 0.8795(3) 0.0212(8) Uani 1 1 d . H7 H 0.9030 0.5071 0.9376 0.025 Uiso 1 1 calc R N3 N 0.51854(15) 0.2584(4) 0.0044(2) 0.0129(6) Uani 1 1 d . O3 O 0.47076(12) 0.1758(3) -0.0742(2) 0.0168(5) Uani 1 1 d . O4 O 0.49854(13) 0.3465(3) 0.0927(2) 0.0168(5) Uani 1 1 d . O5 O 0.58531(12) 0.2534(3) -0.0063(2) 0.0170(5) Uani 1 1 d . C1 C 0.9280(2) 0.5143(6) 0.3108(3) 0.0274(9) Uani 1 1 d . F1 F 0.97031(12) 0.6595(3) 0.3522(3) 0.0418(6) Uani 1 1 d . F2 F 0.92334(14) 0.5070(7) 0.1890(2) 0.0941(15) Uani 1 1 d . F3 F 0.96586(13) 0.3672(3) 0.3603(2) 0.0370(6) Uani 1 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Pt1 0.00830(6) 0.01143(6) 0.01033(6) -0.00017(5) 0.00201(4) -0.00009(6) O1 0.0093(11) 0.0220(12) 0.0105(10) -0.0010(9) 0.0013(8) -0.0018(10) N2 0.0096(13) 0.0164(14) 0.0143(12) -0.0014(11) 0.0031(10) -0.0008(12) O2 0.0099(11) 0.0206(13) 0.0128(10) 0.0009(9) 0.0035(8) 0.0013(10) N1 0.0117(14) 0.0172(16) 0.0148(13) -0.0003(11) 0.0036(10) -0.0008(12) C2 0.0103(16) 0.0232(19) 0.0162(16) -0.0008(13) 0.0026(12) -0.0024(14) C4 0.0125(17) 0.0087(15) 0.0148(15) -0.0020(12) 0.0012(12) -0.0025(13) C3 0.0114(17) 0.0251(18) 0.0139(16) 0.0003(13) 0.0004(13) -0.0005(14) C10 0.0163(17) 0.0144(16) 0.0149(15) -0.0038(14) 0.0010(12) -0.0023(15) C5 0.0125(16) 0.0112(16) 0.0130(14) 0.0002(12) 0.0034(12) 0.0020(13) C6 0.0133(18) 0.0204(18) 0.0181(16) -0.0001(13) 0.0025(13) 0.0007(14) C8 0.0240(19) 0.0215(18) 0.0132(15) 0.0021(14) 0.0038(13) 0.0029(17) C9 0.0236(19) 0.0156(18) 0.0169(16) -0.0018(13) 0.0102(14) -0.0012(15) C7 0.0193(19) 0.027(2) 0.0159(17) -0.0010(14) 0.0005(14) 0.0035(16) N3 0.0123(14) 0.0136(14) 0.0121(13) 0.0025(10) 0.0007(10) -0.0009(11) O3 0.0122(12) 0.0196(13) 0.0162(11) -0.0037(10) -0.0036(9) 0.0009(11) O4 0.0183(13) 0.0178(13) 0.0155(11) -0.0035(9) 0.0062(9) -0.0027(10) O5 0.0091(12) 0.0172(12) 0.0251(12) -0.0027(10) 0.0040(9) 0.0001(10) C1 0.0124(18) 0.057(3) 0.0115(16) 0.0021(16) -0.0005(13) 0.0037(18) F1 0.0166(12) 0.0342(14) 0.0780(19) 0.0138(13) 0.0177(12) -0.0024(11) F2 0.0166(13) 0.253(5) 0.0139(12) -0.0058(19) 0.0057(10) 0.019(2) F3 0.0200(12) 0.0314(13) 0.0642(17) -0.0044(12) 0.0197(12) 0.0049(11) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' F F 0.0171 0.0103 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Pt Pt -1.7033 8.3905 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle O2 Pt1 O1 94.69(9) O2 Pt1 N2 86.12(10) O1 Pt1 N2 176.19(10) O2 Pt1 N1 176.54(10) O1 Pt1 N1 88.69(10) N2 Pt1 N1 90.55(11) C2 O1 Pt1 119.8(2) Pt1 N2 H2A 109.5 Pt1 N2 H2B 109.5 H2A N2 H2B 109.5 Pt1 N2 H2C 109.5 H2A N2 H2C 109.5 H2B N2 H2C 109.5 C4 O2 Pt1 124.7(2) Pt1 N1 H1A 109.5 Pt1 N1 H1B 109.5 H1A N1 H1B 109.5 Pt1 N1 H1C 109.5 H1A N1 H1C 109.5 H1B N1 H1C 109.5 O1 C2 C3 130.3(3) O1 C2 C1 113.1(3) C3 C2 C1 116.6(3) O2 C4 C3 124.4(3) O2 C4 C5 114.8(3) C3 C4 C5 120.8(3) C2 C3 C4 125.8(3) C2 C3 H3 117.1 C4 C3 H3 117.1 C9 C10 C5 120.0(3) C9 C10 H10 120.0 C5 C10 H10 120.0 C6 C5 C10 119.0(3) C6 C5 C4 122.6(3) C10 C5 C4 118.4(3) C7 C6 C5 120.4(3) C7 C6 H6 119.8 C5 C6 H6 119.8 C9 C8 C7 120.1(3) C9 C8 H8 120.0 C7 C8 H8 120.0 C8 C9 C10 120.1(3) C8 C9 H9 119.9 C10 C9 H9 119.9 C6 C7 C8 120.4(3) C6 C7 H7 119.8 C8 C7 H7 119.8 O5 N3 O3 119.9(3) O5 N3 O4 120.8(3) O3 N3 O4 119.3(3) F2 C1 F3 108.0(4) F2 C1 F1 107.4(4) F3 C1 F1 105.2(3) F2 C1 C2 112.2(3) F3 C1 C2 112.2(3) F1 C1 C2 111.5(3) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance Pt1 O2 1.988(2) Pt1 O1 2.005(2) Pt1 N2 2.015(2) Pt1 N1 2.017(3) O1 C2 1.270(4) N2 H2A 0.9100 N2 H2B 0.9100 N2 H2C 0.9100 O2 C4 1.272(4) N1 H1A 0.9100 N1 H1B 0.9100 N1 H1C 0.9100 C2 C3 1.379(4) C2 C1 1.530(5) C4 C3 1.409(4) C4 C5 1.481(4) C3 H3 0.9500 C10 C9 1.388(4) C10 C5 1.400(4) C10 H10 0.9500 C5 C6 1.397(5) C6 C7 1.376(5) C6 H6 0.9500 C8 C9 1.380(5) C8 C7 1.383(5) C8 H8 0.9500 C9 H9 0.9500 C7 H7 0.9500 N3 O5 1.251(3) N3 O3 1.253(3) N3 O4 1.255(3) C1 F2 1.305(4) C1 F3 1.323(5) C1 F1 1.327(5)