#------------------------------------------------------------------------------ #$Date: 2013-12-28 07:07:06 +0000 (Sat, 28 Dec 2013) $ #$Revision: 91932 $ #$URL: svn://www.crystallography.net/cod/cif/1/50/78/1507818.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1507818 loop_ _publ_author_name 'Mandal, Amal Kumar' 'Suresh, Moorthy' 'Das, Priyadip' 'Suresh, E.' 'Baidya, Mithu' 'Ghosh, Sudip K.' 'Das, Amitava' _publ_section_title ; Recognition of Hg2+Ion through Restricted Imine Isomerization: Crystallographic Evidence and Imaging in Live Cells ; _journal_issue 12 _journal_name_full 'Organic Letters' _journal_page_first 2980 _journal_volume 14 _journal_year 2012 _chemical_formula_sum 'C22 H16 Hg2 I4 N4' _chemical_formula_weight 1245.17 _chemical_name_systematic ; ? ; _space_group_IT_number 15 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-C 2yc' _symmetry_space_group_name_H-M 'C 1 2/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 127.050(2) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 18.516(2) _cell_length_b 12.5559(16) _cell_length_c 15.301(2) _cell_measurement_reflns_used 4238 _cell_measurement_temperature 110(2) _cell_measurement_theta_max 28.21 _cell_measurement_theta_min 2.76 _cell_volume 2839.1(6) _computing_cell_refinement 'BRUKER SMART' _computing_data_collection 'BRUKER SMART' _computing_data_reduction 'BRUKER SAINT' _computing_molecular_graphics ORTEP _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 110(2) _diffrn_measured_fraction_theta_full 0.932 _diffrn_measured_fraction_theta_max 0.932 _diffrn_measurement_device_type 'BRUKER SMART APEX CCD DIFFRACTOMETER' _diffrn_measurement_method 'OMEGA-PHI SCAN' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0509 _diffrn_reflns_av_sigmaI/netI 0.0602 _diffrn_reflns_limit_h_max 21 _diffrn_reflns_limit_h_min -24 _diffrn_reflns_limit_k_max 16 _diffrn_reflns_limit_k_min -16 _diffrn_reflns_limit_l_max 19 _diffrn_reflns_limit_l_min -9 _diffrn_reflns_number 8301 _diffrn_reflns_theta_full 28.28 _diffrn_reflns_theta_max 28.28 _diffrn_reflns_theta_min 2.13 _exptl_absorpt_coefficient_mu 15.168 _exptl_absorpt_correction_T_max 0.2633 _exptl_absorpt_correction_T_min 0.1281 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'BRUKER SADABS' _exptl_crystal_colour Orange _exptl_crystal_density_diffrn 2.913 _exptl_crystal_density_method 'not measured' _exptl_crystal_description PLATES _exptl_crystal_F_000 2192 _exptl_crystal_size_max 0.23 _exptl_crystal_size_mid 0.20 _exptl_crystal_size_min 0.12 _refine_diff_density_max 4.866 _refine_diff_density_min -2.080 _refine_diff_density_rms 0.346 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.975 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 145 _refine_ls_number_reflns 3287 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 0.975 _refine_ls_R_factor_all 0.0548 _refine_ls_R_factor_gt 0.0510 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0694P)^2^+97.1838P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1236 _refine_ls_wR_factor_ref 0.1266 _reflns_number_gt 3093 _reflns_number_total 3287 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file ol3009733_si_001.cif _[local]_cod_data_source_block hg2l2 _[local]_cod_cif_authors_sg_H-M C2/c _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. '_exptl_absorpt_correction_type' value 'MULTI-SCAN' changed to 'multi-scan' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1891 2012-01-12 08:04:46Z andrius ; _cod_original_cell_volume 2839.2(6) _cod_database_code 1507818 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y, -z+1/2' 'x+1/2, y+1/2, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y, z-1/2' '-x+1/2, -y+1/2, -z' 'x+1/2, -y+1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags Hg1 Hg 0.41765(3) 0.33371(3) 0.38576(3) 0.02022(14) Uani 1 1 d . I1 I 0.30274(5) 0.26739(5) 0.42699(6) 0.02434(18) Uani 1 1 d . I2 I 0.42580(5) 0.52594(5) 0.32177(5) 0.02110(17) Uani 1 1 d . N1 N 0.5289(6) 0.2014(7) 0.4694(7) 0.0180(16) Uani 1 1 d . N2 N 0.3866(6) 0.1914(6) 0.2442(6) 0.0165(16) Uani 1 1 d . C1 C 0.6013(7) 0.2049(8) 0.5740(8) 0.0194(19) Uani 1 1 d . H1 H 0.6105 0.2647 0.6155 0.023 Uiso 1 1 calc R C2 C 0.6634(7) 0.1223(8) 0.6230(8) 0.0205(19) Uani 1 1 d . H2 H 0.7136 0.1270 0.6960 0.025 Uiso 1 1 calc R C3 C 0.6501(7) 0.0338(8) 0.5628(8) 0.022(2) Uani 1 1 d . H3 H 0.6908 -0.0227 0.5948 0.027 Uiso 1 1 calc R C4 C 0.5757(7) 0.0290(8) 0.4539(9) 0.024(2) Uani 1 1 d . H4 H 0.5659 -0.0300 0.4112 0.029 Uiso 1 1 calc R C5 C 0.5157(6) 0.1148(8) 0.4094(7) 0.0173(18) Uani 1 1 d . C6 C 0.4363(7) 0.1108(7) 0.2934(8) 0.0182(19) Uani 1 1 d . H6 H 0.4222 0.0471 0.2552 0.022 Uiso 1 1 calc R C7 C 0.3087(6) 0.1776(7) 0.1330(7) 0.0133(17) Uani 1 1 d . C8 C 0.2526(7) 0.0913(8) 0.1033(8) 0.0191(19) Uani 1 1 d . H8 H 0.2662 0.0401 0.1551 0.023 Uiso 1 1 calc R C9 C 0.2897(6) 0.2563(7) 0.0547(7) 0.0117(16) Uani 1 1 d . C10 C 0.3463(6) 0.3457(7) 0.0811(7) 0.0148(18) Uani 1 1 d . H10 H 0.3990 0.3535 0.1521 0.018 Uiso 1 1 calc R C11 C 0.3251(7) 0.4195(7) 0.0051(8) 0.0182(19) Uani 1 1 d . H11 H 0.3625 0.4783 0.0248 0.022 Uiso 1 1 calc R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Hg1 0.0238(2) 0.0194(2) 0.0192(2) 0.00298(13) 0.01388(19) 0.00351(14) I1 0.0292(4) 0.0243(4) 0.0259(4) 0.0041(2) 0.0201(3) 0.0017(3) I2 0.0270(4) 0.0165(3) 0.0196(3) 0.0005(2) 0.0139(3) 0.0015(2) N1 0.021(4) 0.020(4) 0.012(4) 0.006(3) 0.009(4) 0.004(3) N2 0.019(4) 0.015(4) 0.010(4) 0.000(3) 0.006(4) 0.001(3) C1 0.019(5) 0.021(5) 0.013(4) -0.007(4) 0.007(4) -0.003(4) C2 0.018(5) 0.023(5) 0.013(4) -0.001(4) 0.006(4) -0.002(4) C3 0.017(5) 0.020(5) 0.018(5) 0.009(4) 0.004(4) 0.013(4) C4 0.027(6) 0.021(5) 0.020(5) 0.001(4) 0.013(5) 0.006(4) C5 0.015(4) 0.026(5) 0.007(4) 0.002(3) 0.005(4) -0.002(4) C6 0.032(5) 0.014(4) 0.015(4) -0.002(3) 0.017(5) -0.002(4) C7 0.015(4) 0.014(4) 0.006(4) -0.003(3) 0.004(4) 0.000(3) C8 0.020(5) 0.020(5) 0.019(5) 0.010(4) 0.012(4) 0.001(4) C9 0.011(4) 0.016(4) 0.005(4) 0.002(3) 0.003(4) -0.001(3) C10 0.012(4) 0.021(5) 0.005(4) -0.001(3) 0.001(4) -0.001(3) C11 0.027(5) 0.012(4) 0.021(5) 0.002(3) 0.017(4) -0.004(4) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' I I -0.4742 1.8119 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Hg Hg -2.3894 9.2266 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 N1 Hg1 N2 69.3(3) . . N1 Hg1 I2 128.6(2) . . N2 Hg1 I2 110.69(17) . . N1 Hg1 I1 102.3(2) . . N2 Hg1 I1 100.03(18) . . I2 Hg1 I1 126.83(2) . . C1 N1 C5 118.9(8) . . C1 N1 Hg1 123.5(7) . . C5 N1 Hg1 117.5(6) . . C6 N2 C7 117.4(8) . . C6 N2 Hg1 109.8(6) . . C7 N2 Hg1 129.4(6) . . N1 C1 C2 122.1(9) . . N1 C1 H1 118.9 . . C2 C1 H1 118.9 . . C3 C2 C1 119.4(9) . . C3 C2 H2 120.3 . . C1 C2 H2 120.3 . . C2 C3 C4 119.4(9) . . C2 C3 H3 120.3 . . C4 C3 H3 120.3 . . C3 C4 C5 118.4(9) . . C3 C4 H4 120.8 . . C5 C4 H4 120.8 . . N1 C5 C4 121.8(9) . . N1 C5 C6 119.3(9) . . C4 C5 C6 118.9(9) . . N2 C6 C5 121.9(9) . . N2 C6 H6 119.0 . . C5 C6 H6 119.0 . . C8 C7 C9 120.9(8) . . C8 C7 N2 120.6(8) . . C9 C7 N2 118.5(8) . . C7 C8 C11 120.0(8) . 7 C7 C8 H8 120.0 . . C11 C8 H8 120.0 7 . C10 C9 C9 119.1(10) . 7 C10 C9 C7 122.9(8) . . C9 C9 C7 118.0(10) 7 . C11 C10 C9 121.2(9) . . C11 C10 H10 119.4 . . C9 C10 H10 119.4 . . C10 C11 C8 120.8(9) . 7 C10 C11 H11 119.6 . . C8 C11 H11 119.6 7 . loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 Hg1 N1 2.338(8) . Hg1 N2 2.591(8) . Hg1 I2 2.6431(8) . Hg1 I1 2.6899(8) . N1 C1 1.332(13) . N1 C5 1.347(13) . N2 C6 1.267(13) . N2 C7 1.431(12) . C1 C2 1.386(15) . C1 H1 0.9300 . C2 C3 1.368(14) . C2 H2 0.9300 . C3 C4 1.383(15) . C3 H3 0.9300 . C4 C5 1.396(14) . C4 H4 0.9300 . C5 C6 1.473(13) . C6 H6 0.9300 . C7 C8 1.375(13) . C7 C9 1.425(12) . C8 C11 1.401(14) 7 C8 H8 0.9300 . C9 C10 1.418(13) . C9 C9 1.422(17) 7 C10 C11 1.348(12) . C10 H10 0.9300 . C11 C8 1.401(14) 7 C11 H11 0.9300 . _journal_paper_doi 10.1021/ol3009733