#------------------------------------------------------------------------------ #$Date: 2025-08-18 14:30:32 +0100 (Mon, 18 Aug 2025) $ #$Revision: 301775 $ #$URL: svn://www.crystallography.net/cod/cif/1/50/78/1507866.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_1507866 loop_ _publ_author_name 'Morita, Masaki' 'Hirai, Go' 'Ohkubo, Megumi' 'Koshino, Hiroyuki' 'Hashizume, Daisuke' 'Maruoka, Keiji' 'Sodeoka, Mikiko' _publ_section_title ; Kinetically controlled one-pot formation of DEFGH-rings of type B physalins through domino-type transformations. ; _journal_issue 13 _journal_name_full 'Organic letters' _journal_page_first 3434 _journal_page_last 3437 _journal_paper_doi 10.1021/ol301394b _journal_volume 14 _journal_year 2012 _chemical_formula_moiety 'C17 H22 O9' _chemical_formula_sum 'C17 H22 O9' _chemical_formula_weight 370.35 _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _atom_sites_solution_hydrogens difmap _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90 _cell_angle_beta 113.3492(7) _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 12.7930(2) _cell_length_b 9.40847(17) _cell_length_c 14.6746(3) _cell_measurement_reflns_used 20311 _cell_measurement_temperature 140 _cell_measurement_theta_max 68.33 _cell_measurement_theta_min 3.28 _cell_volume 1621.63(5) _computing_cell_refinement PROCESS-AUTO _computing_data_collection PROCESS-AUTO _computing_data_reduction PROCESS-AUTO _computing_molecular_graphics 'ORTEP-3 for Windows' _computing_publication_material 'SHELXL-97 (Sheldrick, 2008)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 2008)' _computing_structure_solution SIR2004 _diffrn_ambient_temperature 140 _diffrn_detector_area_resol_mean 10 _diffrn_measured_fraction_theta_full 0.983 _diffrn_measured_fraction_theta_max 0.983 _diffrn_measurement_device_type 'Rigaku RAXIS RAPID' _diffrn_measurement_method \w-scan _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.54187 _diffrn_reflns_av_R_equivalents 0.0280 _diffrn_reflns_av_sigmaI/netI 0.0228 _diffrn_reflns_limit_h_max 15 _diffrn_reflns_limit_h_min -15 _diffrn_reflns_limit_k_max 10 _diffrn_reflns_limit_k_min -10 _diffrn_reflns_limit_l_max 17 _diffrn_reflns_limit_l_min -17 _diffrn_reflns_number 20577 _diffrn_reflns_theta_full 68.25 _diffrn_reflns_theta_max 68.25 _diffrn_reflns_theta_min 3.89 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 1.055 _exptl_absorpt_correction_T_max 0.8225 _exptl_absorpt_correction_T_min 0.6353 _exptl_absorpt_correction_type numerical _exptl_absorpt_process_details numabs _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.517 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 784 _exptl_crystal_size_max 0.60 _exptl_crystal_size_mid 0.34 _exptl_crystal_size_min 0.26 _refine_diff_density_max 0.313 _refine_diff_density_min -0.211 _refine_diff_density_rms 0.044 _refine_ls_extinction_coef 0.0038(2) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_ref 1.112 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 246 _refine_ls_number_reflns 2920 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.112 _refine_ls_R_factor_all 0.0429 _refine_ls_R_factor_gt 0.0376 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0282P)^2^+1.2114P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0848 _refine_ls_wR_factor_ref 0.0862 _reflns_number_gt 2559 _reflns_number_total 2920 _reflns_threshold_expression I>2\s(I) _cod_data_source_file ol301394b_si_002.cif _cod_data_source_block 328-3 _cod_depositor_comments 'Adding full bibliography for 1507866.cif.' _cod_original_sg_symbol_H-M 'P 21/n' _cod_database_code 1507866 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags O1 O 0.38105(11) 0.55848(14) 0.25882(11) 0.0279(3) Uani 1 1 d . H1 H 0.334(2) 0.504(3) 0.2681(19) 0.053(8) Uiso 1 1 d . O2 O 0.58801(11) 0.67636(13) 0.23952(10) 0.0258(3) Uani 1 1 d . O3 O 0.52956(10) 0.49530(12) 0.13347(8) 0.0197(3) Uani 1 1 d . O4 O 0.35451(9) 0.27149(12) 0.21347(9) 0.0184(3) Uani 1 1 d . O5 O 0.41197(10) 0.16585(13) 0.00853(8) 0.0233(3) Uani 1 1 d . O6 O 0.29554(11) 0.00045(15) 0.01518(9) 0.0299(3) Uani 1 1 d . O7 O 0.33586(10) 0.02989(12) 0.23990(9) 0.0193(3) Uani 1 1 d . O8 O 0.52766(10) 0.26575(13) 0.43088(8) 0.0201(3) Uani 1 1 d . O9 O 0.43290(10) 0.15055(13) 0.51836(9) 0.0220(3) Uani 1 1 d . C1 C 0.45906(13) 0.33426(18) 0.21959(12) 0.0155(3) Uani 1 1 d . C2 C 0.48090(14) 0.48057(18) 0.27249(13) 0.0187(4) Uani 1 1 d . H2 H 0.5311 0.4709 0.3445 0.022 Uiso 1 1 calc R C3 C 0.53957(14) 0.56442(18) 0.21767(12) 0.0182(4) Uani 1 1 d . C4 C 0.45152(14) 0.37391(18) 0.11427(12) 0.0176(4) Uani 1 1 d . C5 C 0.33371(15) 0.4242(2) 0.04508(13) 0.0262(4) Uani 1 1 d . H5A H 0.3083 0.4998 0.0775 0.039 Uiso 1 1 calc R H5B H 0.2802 0.3444 0.0296 0.039 Uiso 1 1 calc R H5C H 0.3367 0.4607 -0.0164 0.039 Uiso 1 1 calc R C6 C 0.55182(14) 0.22595(17) 0.27833(12) 0.0150(3) Uani 1 1 d . H6 H 0.6242 0.2779 0.3165 0.018 Uiso 1 1 calc R C7 C 0.50355(14) 0.16677(18) 0.35110(12) 0.0167(4) Uani 1 1 d . H7 H 0.5349 0.0704 0.3758 0.020 Uiso 1 1 calc R C8 C 0.37551(14) 0.16100(18) 0.28692(12) 0.0170(4) Uani 1 1 d . H8 H 0.3331 0.1845 0.3294 0.020 Uiso 1 1 calc R C9 C 0.50108(15) 0.26572(19) 0.06396(12) 0.0196(4) Uani 1 1 d . H9 H 0.5238 0.3183 0.0154 0.023 Uiso 1 1 calc R C10 C 0.60473(14) 0.18914(19) 0.13511(12) 0.0192(4) Uani 1 1 d . H10A H 0.6666 0.2583 0.1681 0.023 Uiso 1 1 calc R H10B H 0.6319 0.1202 0.0983 0.023 Uiso 1 1 calc R C11 C 0.57489(14) 0.11089(18) 0.21312(12) 0.0169(4) Uani 1 1 d . C12 C 0.47301(14) 0.00999(18) 0.15678(12) 0.0183(4) Uani 1 1 d . H12 H 0.5101 -0.0720 0.1379 0.022 Uiso 1 1 calc R C13 C 0.38475(15) 0.05996(19) 0.05767(13) 0.0204(4) Uani 1 1 d . C14 C 0.67709(15) 0.0205(2) 0.27763(13) 0.0228(4) Uani 1 1 d . H14A H 0.6958 -0.0472 0.2356 0.034 Uiso 1 1 calc R H14B H 0.6582 -0.0315 0.3269 0.034 Uiso 1 1 calc R H14C H 0.7427 0.0825 0.3116 0.034 Uiso 1 1 calc R C15 C 0.41370(15) -0.06017(18) 0.21777(13) 0.0194(4) Uani 1 1 d . H15A H 0.3715 -0.1445 0.1811 0.023 Uiso 1 1 calc R H15B H 0.4727 -0.0942 0.2811 0.023 Uiso 1 1 calc R C16 C 0.53713(15) 0.2025(2) 0.52180(12) 0.0220(4) Uani 1 1 d . H16A H 0.5925 0.1233 0.5379 0.026 Uiso 1 1 calc R H16B H 0.5670 0.2738 0.5756 0.026 Uiso 1 1 calc R C17 C 0.35491(16) 0.2624(2) 0.51358(14) 0.0248(4) Uani 1 1 d . H17A H 0.2786 0.2225 0.4960 0.037 Uiso 1 1 calc R H17B H 0.3531 0.3317 0.4632 0.037 Uiso 1 1 calc R H17C H 0.3796 0.3094 0.5783 0.037 Uiso 1 1 calc R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 O1 0.0284(7) 0.0164(7) 0.0503(9) 0.0003(6) 0.0275(7) 0.0019(6) O2 0.0313(7) 0.0150(7) 0.0369(7) -0.0034(5) 0.0198(6) -0.0053(6) O3 0.0258(6) 0.0152(6) 0.0213(6) 0.0009(5) 0.0127(5) -0.0049(5) O4 0.0156(6) 0.0172(6) 0.0239(6) 0.0044(5) 0.0092(5) -0.0007(5) O5 0.0294(7) 0.0237(7) 0.0163(6) -0.0032(5) 0.0086(5) -0.0082(5) O6 0.0290(7) 0.0333(8) 0.0263(7) -0.0062(6) 0.0097(6) -0.0130(6) O7 0.0209(6) 0.0147(7) 0.0268(6) -0.0041(5) 0.0142(5) -0.0037(5) O8 0.0292(7) 0.0178(7) 0.0158(6) -0.0014(5) 0.0115(5) -0.0037(5) O9 0.0296(7) 0.0172(7) 0.0254(6) 0.0030(5) 0.0173(5) 0.0031(5) C1 0.0156(8) 0.0142(9) 0.0189(8) -0.0003(7) 0.0093(7) -0.0007(7) C2 0.0231(9) 0.0135(9) 0.0233(9) -0.0008(7) 0.0132(7) 0.0006(7) C3 0.0181(8) 0.0146(9) 0.0234(9) 0.0013(7) 0.0098(7) 0.0034(7) C4 0.0197(8) 0.0142(9) 0.0188(8) 0.0019(6) 0.0076(7) -0.0031(7) C5 0.0249(10) 0.0269(11) 0.0232(9) 0.0063(8) 0.0057(8) 0.0016(8) C6 0.0161(8) 0.0143(9) 0.0154(8) -0.0002(6) 0.0073(6) -0.0010(7) C7 0.0226(9) 0.0129(9) 0.0170(8) -0.0011(6) 0.0105(7) -0.0004(7) C8 0.0222(9) 0.0133(9) 0.0192(8) 0.0002(7) 0.0123(7) -0.0012(7) C9 0.0244(9) 0.0199(10) 0.0174(8) -0.0017(7) 0.0115(7) -0.0068(7) C10 0.0219(9) 0.0181(9) 0.0225(9) -0.0037(7) 0.0140(7) -0.0024(7) C11 0.0176(8) 0.0153(9) 0.0203(8) -0.0011(7) 0.0102(7) -0.0005(7) C12 0.0215(9) 0.0145(9) 0.0232(9) -0.0035(7) 0.0134(7) -0.0009(7) C13 0.0253(9) 0.0190(9) 0.0214(9) -0.0063(7) 0.0142(7) -0.0040(8) C14 0.0212(9) 0.0201(10) 0.0287(10) 0.0007(7) 0.0117(8) 0.0036(7) C15 0.0246(9) 0.0123(9) 0.0249(9) -0.0022(7) 0.0138(7) -0.0016(7) C16 0.0260(9) 0.0255(10) 0.0161(8) 0.0019(7) 0.0100(7) 0.0015(7) C17 0.0305(10) 0.0218(10) 0.0273(9) -0.0024(8) 0.0169(8) 0.0036(8) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0492 0.0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C2 O1 H1 109.2(18) C3 O3 C4 111.04(12) C1 O4 C8 110.94(12) C13 O5 C9 119.24(13) C8 O7 C15 118.68(12) C16 O8 C7 113.96(13) C16 O9 C17 112.31(14) O4 C1 C6 104.78(13) O4 C1 C2 112.09(13) C6 C1 C2 111.15(13) O4 C1 C4 110.37(13) C6 C1 C4 116.41(13) C2 C1 C4 102.27(13) O1 C2 C3 105.26(13) O1 C2 C1 114.53(14) C3 C2 C1 102.98(13) O1 C2 H2 111.2 C3 C2 H2 111.2 C1 C2 H2 111.2 O2 C3 O3 121.11(15) O2 C3 C2 128.71(16) O3 C3 C2 110.18(14) O3 C4 C5 107.74(14) O3 C4 C9 103.24(12) C5 C4 C9 111.97(14) O3 C4 C1 103.07(12) C5 C4 C1 113.12(14) C9 C4 C1 116.38(14) C4 C5 H5A 109.5 C4 C5 H5B 109.5 H5A C5 H5B 109.5 C4 C5 H5C 109.5 H5A C5 H5C 109.5 H5B C5 H5C 109.5 C7 C6 C1 101.31(13) C7 C6 C11 113.84(14) C1 C6 C11 114.16(13) C7 C6 H6 109.1 C1 C6 H6 109.1 C11 C6 H6 109.1 O8 C7 C8 110.92(13) O8 C7 C6 108.52(13) C8 C7 C6 102.24(13) O8 C7 H7 111.6 C8 C7 H7 111.6 C6 C7 H7 111.6 O7 C8 O4 109.94(13) O7 C8 C7 114.98(14) O4 C8 C7 105.69(12) O7 C8 H8 108.7 O4 C8 H8 108.7 C7 C8 H8 108.7 O5 C9 C10 111.01(14) O5 C9 C4 108.44(13) C10 C9 C4 113.69(14) O5 C9 H9 107.8 C10 C9 H9 107.8 C4 C9 H9 107.8 C9 C10 C11 109.65(13) C9 C10 H10A 109.7 C11 C10 H10A 109.7 C9 C10 H10B 109.7 C11 C10 H10B 109.7 H10A C10 H10B 108.2 C10 C11 C14 108.91(13) C10 C11 C6 106.91(13) C14 C11 C6 109.33(13) C10 C11 C12 107.47(13) C14 C11 C12 108.62(14) C6 C11 C12 115.43(13) C13 C12 C15 109.88(14) C13 C12 C11 117.85(14) C15 C12 C11 117.12(14) C13 C12 H12 103.2 C15 C12 H12 103.2 C11 C12 H12 103.2 O6 C13 O5 117.32(16) O6 C13 C12 123.07(16) O5 C13 C12 119.15(14) C11 C14 H14A 109.5 C11 C14 H14B 109.5 H14A C14 H14B 109.5 C11 C14 H14C 109.5 H14A C14 H14C 109.5 H14B C14 H14C 109.5 O7 C15 C12 115.15(14) O7 C15 H15A 108.5 C12 C15 H15A 108.5 O7 C15 H15B 108.5 C12 C15 H15B 108.5 H15A C15 H15B 107.5 O9 C16 O8 112.72(14) O9 C16 H16A 109.0 O8 C16 H16A 109.0 O9 C16 H16B 109.0 O8 C16 H16B 109.0 H16A C16 H16B 107.8 O9 C17 H17A 109.5 O9 C17 H17B 109.5 H17A C17 H17B 109.5 O9 C17 H17C 109.5 H17A C17 H17C 109.5 H17B C17 H17C 109.5 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O1 C2 1.416(2) O1 H1 0.84(3) O2 C3 1.199(2) O3 C3 1.357(2) O3 C4 1.4688(19) O4 C1 1.4320(19) O4 C8 1.4440(19) O5 C13 1.354(2) O5 C9 1.452(2) O6 C13 1.200(2) O7 C8 1.406(2) O7 C15 1.439(2) O8 C16 1.4215(19) O8 C7 1.4306(19) O9 C16 1.402(2) O9 C17 1.433(2) C1 C6 1.542(2) C1 C2 1.550(2) C1 C4 1.555(2) C2 C3 1.520(2) C2 H2 1.0000 C4 C5 1.521(2) C4 C9 1.534(2) C5 H5A 0.9800 C5 H5B 0.9800 C5 H5C 0.9800 C6 C7 1.534(2) C6 C11 1.549(2) C6 H6 1.0000 C7 C8 1.533(2) C7 H7 1.0000 C8 H8 1.0000 C9 C10 1.507(2) C9 H9 1.0000 C10 C11 1.531(2) C10 H10A 0.9900 C10 H10B 0.9900 C11 C14 1.532(2) C11 C12 1.559(2) C12 C13 1.520(2) C12 C15 1.533(2) C12 H12 1.0000 C14 H14A 0.9800 C14 H14B 0.9800 C14 H14C 0.9800 C15 H15A 0.9900 C15 H15B 0.9900 C16 H16A 0.9900 C16 H16B 0.9900 C17 H17A 0.9800 C17 H17B 0.9800 C17 H17C 0.9800 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A O1 H1 O7 0.84(3) 2.14(3) 2.7954(17) 134(2) 2 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C8 O4 C1 C6 18.11(16) C8 O4 C1 C2 -102.53(15) C8 O4 C1 C4 144.18(13) O4 C1 C2 O1 -31.46(19) C6 C1 C2 O1 -148.34(14) C4 C1 C2 O1 86.75(16) O4 C1 C2 C3 -145.16(13) C6 C1 C2 C3 97.95(15) C4 C1 C2 C3 -26.95(16) C4 O3 C3 O2 -170.63(15) C4 O3 C3 C2 8.51(18) O1 C2 C3 O2 71.4(2) C1 C2 C3 O2 -168.26(17) O1 C2 C3 O3 -107.62(15) C1 C2 C3 O3 12.68(17) C3 O3 C4 C5 93.90(16) C3 O3 C4 C9 -147.49(13) C3 O3 C4 C1 -25.94(16) O4 C1 C4 O3 151.29(12) C6 C1 C4 O3 -89.48(16) C2 C1 C4 O3 31.87(15) O4 C1 C4 C5 35.24(19) C6 C1 C4 C5 154.47(15) C2 C1 C4 C5 -84.18(16) O4 C1 C4 C9 -96.52(16) C6 C1 C4 C9 22.7(2) C2 C1 C4 C9 144.06(14) O4 C1 C6 C7 -34.69(15) C2 C1 C6 C7 86.57(15) C4 C1 C6 C7 -156.91(14) O4 C1 C6 C11 88.09(15) C2 C1 C6 C11 -150.65(13) C4 C1 C6 C11 -34.12(19) C16 O8 C7 C8 96.02(16) C16 O8 C7 C6 -152.42(13) C1 C6 C7 O8 -79.69(15) C11 C6 C7 O8 157.31(13) C1 C6 C7 C8 37.57(15) C11 C6 C7 C8 -85.43(16) C15 O7 C8 O4 92.25(16) C15 O7 C8 C7 -26.85(19) C1 O4 C8 O7 -118.35(14) C1 O4 C8 C7 6.30(16) O8 C7 C8 O7 -151.00(13) C6 C7 C8 O7 93.47(15) O8 C7 C8 O4 87.56(15) C6 C7 C8 O4 -27.97(16) C13 O5 C9 C10 47.08(19) C13 O5 C9 C4 -78.49(18) O3 C4 C9 O5 -158.82(12) C5 C4 C9 O5 -43.20(18) C1 C4 C9 O5 89.09(17) O3 C4 C9 C10 77.19(16) C5 C4 C9 C10 -167.19(14) C1 C4 C9 C10 -34.9(2) O5 C9 C10 C11 -63.96(17) C4 C9 C10 C11 58.63(18) C9 C10 C11 C14 173.79(14) C9 C10 C11 C6 -68.19(17) C9 C10 C11 C12 56.30(17) C7 C6 C11 C10 171.52(13) C1 C6 C11 C10 55.85(17) C7 C6 C11 C14 -70.73(17) C1 C6 C11 C14 173.61(13) C7 C6 C11 C12 52.05(19) C1 C6 C11 C12 -63.62(18) C10 C11 C12 C13 -34.68(19) C14 C11 C12 C13 -152.36(15) C6 C11 C12 C13 84.49(18) C10 C11 C12 C15 -169.31(14) C14 C11 C12 C15 73.01(18) C6 C11 C12 C15 -50.1(2) C9 O5 C13 O6 163.23(15) C9 O5 C13 C12 -24.4(2) C15 C12 C13 O6 -31.5(2) C11 C12 C13 O6 -169.19(16) C15 C12 C13 O5 156.52(14) C11 C12 C13 O5 18.9(2) C8 O7 C15 C12 -54.52(19) C13 C12 C15 O7 -59.76(18) C11 C12 C15 O7 78.24(19) C17 O9 C16 O8 -69.51(18) C7 O8 C16 O9 -68.67(18) loop_ _cod_related_entry_id _cod_related_entry_database _cod_related_entry_code 1 PubChem 139040295