#------------------------------------------------------------------------------ #$Date: 2011-09-10 04:16:28 +0100 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2002906.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2002906 loop_ _publ_author_name 'Petrosyan, A. M.' 'Sukiasyan, R. P.' 'Terzyan, S. S.' 'Burbelo, V. M.' _publ_section_title ; Interaction of lysine with iodic acid ; _journal_issue 2 _journal_name_full 'Acta Crystallographica Section B' _journal_page_first 221 _journal_page_last 225 _journal_volume 55 _journal_year 1999 _chemical_formula_moiety 'C6 H16 N2 O2 2+,H I2 O6 -,I O3-' _chemical_formula_structural H3N(CH2)4CH(NH3)COOH.2IO3.HIO3 _chemical_formula_sum 'C6 H17 I3 N2 O11' _chemical_formula_weight 673.92 _chemical_name_common Lys.3HIO3 _chemical_name_systematic ' \a,\e--diaminocapronic acid.3HIO~3~' _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _audit_creation_method SHELXL _cell_angle_alpha 90.00 _cell_angle_beta 92.86(3) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 8.360(2) _cell_length_b 6.3300(10) _cell_length_c 14.750(3) _cell_measurement_reflns_used 24 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 16 _cell_measurement_theta_min 14 _cell_volume 779.6(3) _computing_cell_refinement CAD4 _computing_data_collection CAD4 _computing_data_reduction CAD4 _computing_molecular_graphics ORTEP _computing_structure_refinement 'SHELXL-93 (Sheldrick, 1993)' _computing_structure_solution 'SHELXS-86 (Sheldrick, 1990)' _diffrn_ambient_temperature 293(2) _diffrn_measurement_device 'Enraf-Nonius CAD4' _diffrn_measurement_method \w--2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength .71073 _diffrn_reflns_av_R_equivalents .1171 _diffrn_reflns_av_sigmaI/netI .0176 _diffrn_reflns_limit_h_max 11 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 8 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 20 _diffrn_reflns_limit_l_min -20 _diffrn_reflns_number 2601 _diffrn_reflns_theta_max 29.98 _diffrn_reflns_theta_min 2.44 _diffrn_standards_decay_% 10 _diffrn_standards_interval_time 3600 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 6.072 _exptl_absorpt_correction_type 'empirical via \y scans' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 2.87 _exptl_crystal_density_meas 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 628 _exptl_crystal_size_max .6 _exptl_crystal_size_mid .2 _exptl_crystal_size_min .1 _refine_diff_density_max 3.061 _refine_diff_density_min -1.963 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack .02(5) _refine_ls_extinction_coef .0100(10) _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_all 1.071 _refine_ls_goodness_of_fit_obs 1.071 _refine_ls_hydrogen_treatment noref _refine_ls_matrix_type full _refine_ls_number_parameters 200 _refine_ls_number_reflns 2452 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.071 _refine_ls_restrained_S_obs 1.071 _refine_ls_R_factor_all .0339 _refine_ls_R_factor_obs .0338 _refine_ls_shift/esd_max .210 _refine_ls_shift/esd_mean .032 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_scheme 'calc w=1/[\s^2^(Fo^2^)+(0.0765P)^2^+1.2606P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_wR_factor_all .0921 _refine_ls_wR_factor_obs .0918 _reflns_number_observed 2443 _reflns_number_total 2452 _reflns_observed_criterion >2sigma(I) _[local]_cod_data_source_file an0540.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'P 21' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2002906 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 I1 .0147(2) .0116(2) .0204(2) .00019(14) .00143(12) .0000(2) O11 .031(3) .022(3) .024(3) -.006(2) .000(2) -.004(2) O12 .030(3) .019(3) .030(3) .005(2) .004(2) .007(2) O13 .015(2) .043(4) .026(2) -.003(3) .005(2) .005(3) I2 .0142(2) .0118(2) .0201(2) -.00007(14) .00309(13) .00182(15) O21 .026(3) .020(3) .037(3) -.005(2) .003(2) .011(3) O22 .026(3) .032(4) .024(3) .003(2) .005(2) -.013(2) O23 .016(2) .022(3) .034(3) .000(2) .002(2) .005(3) I3 .0192(2) .0082(2) .0149(2) -.00035(14) .00294(12) -.00005(14) O31 .026(3) .018(3) .025(3) .007(2) .006(2) .001(2) O32 .035(3) .018(3) .014(2) -.006(2) .005(2) -.002(2) O33 .025(3) .012(3) .039(3) -.006(2) .007(2) .007(2) O1 .027(3) .043(4) .027(3) -.004(3) .007(2) .003(3) O2 .033(3) .049(5) .019(2) .006(3) .004(2) -.001(3) C1 .029(3) .017(3) .016(3) .002(3) .004(2) -.001(3) C2 .023(3) .020(4) .021(3) -.001(3) .005(2) -.005(3) C3 .026(3) .021(4) .021(3) .001(3) .008(2) .002(3) C4 .026(3) .025(4) .035(4) .006(3) .008(3) .003(4) C5 .022(3) .031(5) .038(4) .000(3) .005(3) -.007(4) C6 .028(3) .033(5) .028(3) .005(4) .005(2) .004(4) N7 .029(3) .025(4) .025(3) .001(3) .003(2) -.006(3) N8 .025(3) .018(3) .023(3) .003(3) .004(2) .002(3) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol I1 .72398(4) .38284(7) .87423(3) .01554(13) Uani d . 1 I O11 .6527(8) .1946(11) .7880(4) .0259(12) Uani d . 1 O O12 .6660(8) .6270(11) .8169(4) .0262(12) Uani d . 1 O O13 .9336(5) .3776(14) .8507(4) .0279(13) Uani d . 1 O I2 .22512(4) .35791(7) .93412(3) .01528(13) Uani d . 1 I O21 .1524(7) .1153(11) .9821(5) .0277(12) Uani d . 1 O O22 .1510(7) .5336(13) 1.0289(4) .0272(14) Uani d . 1 O H22A .0547(7) .5546(13) 1.0204(4) .041 Uiso calc R 1 H O23 .4277(6) .3537(11) .9774(4) .0238(11) Uani d . 1 O I3 .43204(5) -.08631(7) .81957(2) .01402(13) Uani d . 1 I O31 .2990(7) .1453(10) .8057(4) .0230(11) Uani d . 1 O O32 .4450(7) -.1352(12) .7001(3) .0224(11) Uani d . 1 O O33 .2810(7) -.2824(10) .8399(4) .0248(12) Uani d . 1 O O1 .5864(7) .4468(14) .5196(4) .032(2) Uani d . 1 O O2 .3679(7) .4472(15) .4265(4) .033(2) Uani d . 1 O H2B .4316(7) .4177(15) .3852(4) .080 Uiso d R 1 H C1 .4459(9) .4389(14) .5065(4) .0206(13) Uani d . 1 C C2 .3304(8) .4029(15) .5828(4) .0212(13) Uani d . 1 C H2A .2865(8) .2632(15) .5770(4) .080 Uiso d R 1 H C3 .1906(9) .5578(15) .5788(5) .0225(14) Uani d . 1 C H3A .1388(9) .5574(15) .5192(5) .080 Uiso d R 1 H H3B .2342(9) .6963(15) .5896(5) .080 Uiso d R 1 H C4 .0650(10) .5108(17) .6487(6) .028(2) Uani d . 1 C H4A .0245(10) .3701(17) .6398(6) .080 Uiso d R 1 H H4B .1153(10) .5182(17) .7086(6) .080 Uiso d R 1 H C5 -.0709(10) .6730(17) .6432(6) .030(2) Uani d . 1 C H5A -.1017(10) .6940(17) .5803(6) .080 Uiso d R 1 H H5B -.1608(10) .6127(17) .6719(6) .080 Uiso d R 1 H C6 -.0343(9) .8843(19) .6861(5) .029(2) Uani d . 1 C H6A .0694(9) .9299(19) .6688(5) .080 Uiso d R 1 H H6B -.1116(9) .9867(19) .6641(5) .080 Uiso d R 1 H N7 -.0361(8) .8759(15) .7870(4) .0260(14) Uani d . 1 N H7A -.0149(8) 1.0036(15) .8098(4) .039 Uiso calc R 1 H H7B .0379(8) .7849(15) .8082(4) .039 Uiso calc R 1 H H7C -.1322(8) .8340(15) .8032(4) .039 Uiso calc R 1 H N8 .4238(8) .4192(13) .6700(4) .0222(12) Uani d . 1 N H8A .5048(8) .3280(13) .6706(4) .033 Uiso calc R 1 H H8B .3610(8) .3897(13) .7153(4) .033 Uiso calc R 1 H H8C .4619(8) .5499(13) .6767(4) .033 Uiso calc R 1 H loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0033 .0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N .0061 .0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0106 .0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' I I -.4742 1.8119 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag O12 I1 O11 99.3(3) y O13 I1 O11 98.1(3) y O13 I1 O12 99.5(3) y O23 I2 O31 89.8(2) ? O21 I2 O31 86.5(3) ? O22 I2 O31 175.0(2) ? O32 I3 O33 97.0(3) y O32 I3 O31 95.4(3) y O33 I3 O31 98.1(3) y I3 O31 I2 121.9(3) ? N8 C2 C3 111.2(6) y N8 C2 C1 107.7(6) y C3 C2 C1 112.6(7) y N7 C6 C5 112.1(9) y O23 I2 O21 100.3(3) y O23 I2 O22 94.8(3) y O21 I2 O22 94.6(4) y O1 C1 O2 126.0(7) y O1 C1 C2 122.8(7) y O2 C1 C2 111.1(6) y C4 C3 C2 113.4(7) y C5 C4 C3 111.4(8) y C6 C5 C4 116.0(7) y loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag I1 O11 . 1.821(6) yes I1 O12 . 1.816(7) yes I1 O13 . 1.804(5) yes I2 O21 . 1.809(7) yes I2 O22 . 1.914(6) yes I2 O23 . 1.780(5) yes I3 O31 . 1.845(6) yes I3 O32 . 1.798(5) yes I3 O33 . 1.806(6) yes O1 C1 . 1.182(9) yes C2 C1 . 1.537(10) yes C2 N8 . 1.474(9) yes C5 C4 . 1.531(13) yes N7 C6 . 1.491(10) yes I1 O21 2_657 2.740(7) yes I1 O22 2_647 2.805(7) yes I1 O23 . 2.977(5) yes I2 O13 1_455 2.677(5) yes I2 O31 . 2.429(6) yes I2 O33 1_565 2.720(6) yes I3 O11 . 2.620(7) yes I3 O12 1_545 2.670(7) yes I3 O23 2_647 3.184(6) yes C1 O2 . 1.320(9) yes C2 C3 . 1.524(11) yes C3 C4 . 1.538(11) yes C5 C6 . 1.50(2) yes loop_ _geom_contact_atom_site_label_1 _geom_contact_atom_site_label_2 _geom_contact_distance _geom_contact_site_symmetry_2 _geom_contact_publ_flag O22 O21 2.586(8) 2_557 yes N8 O11 2.895(10) . yes N8 O31 2.883(9) . yes N8 O32 2.859(11) 1_565 yes O2 O32 2.549(8) 2_656 yes N7 O33 2.903(10) 1_565 yes N7 O12 2.998(10) 1_455 yes