#------------------------------------------------------------------------------ #$Date: 2011-09-10 04:16:28 +0100 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2003305.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2003305 loop_ _publ_author_name 'Yamaguchi, K.' 'Tanaka, H.' 'Matsumoto, K.' 'Kittaka, A.' 'Miyasaka, T.' _publ_contact_author ; Dr. Kentaro Yamaguchi School of Pharmaceutical Sciences Showa University 1-5-8 Hatanodai, Shinagawa-ku Tokyo 142, Japan ; _publ_section_title ; A Dimeric Uracil Derivative ; _journal_issue 4 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 754 _journal_page_last 756 _journal_volume 51 _journal_year 1995 _chemical_formula_moiety 'C14 H18 N4 O5' _chemical_formula_sum 'C14 H18 N4 O5' _chemical_formula_weight 322.32 _chemical_name_systematic ; 5-Ethoxymethyl-1-[1-ethyl-2,4-dioxo-5- (pyrimidinyl)methyl]uracil ; _symmetry_cell_setting triclinic _symmetry_space_group_name_H-M 'P -1' _atom_type_scat_source IntTabIV _cell_angle_alpha 94.58(2) _cell_angle_beta 105.39(2) _cell_angle_gamma 113.84(3) _cell_formula_units_Z 2 _cell_length_a 9.326(2) _cell_length_b 11.991(3) _cell_length_c 7.9640(10) _cell_measurement_reflns_used 20 _cell_measurement_temperature 297 _cell_measurement_theta_max 30.0 _cell_measurement_theta_min 28.0 _cell_volume 767.5(4) _computing_cell_refinement 'RCRYSTAN (Rigaku Corporation, 1985b)' _computing_data_collection 'AFD (Rigaku Corporation, 1985a)' _computing_data_reduction 'FASE (Yamaguchi, 1993)' _computing_molecular_graphics 'ACV (Stardent Computer Inc., 1990)' _computing_publication_material 'XPACK (Yamaguchi, 1987)' _computing_structure_refinement 'RCRYSTAN (Rigaku Corporation, 1985b)' _computing_structure_solution 'SAPI85 (Yao et al., 1985)' _diffrn_measurement_device 'Rigaku AFC-5' _diffrn_measurement_method '\w/2\q scans' _diffrn_radiation_type CuK\a~1~ _diffrn_radiation_wavelength 1.5405 _diffrn_reflns_av_R_equivalents 0.013 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 13 _diffrn_reflns_limit_k_min -13 _diffrn_reflns_limit_l_max 8 _diffrn_reflns_limit_l_min 0 _diffrn_reflns_number 2531 _diffrn_reflns_theta_max 60 _diffrn_standards_decay_% <3 _diffrn_standards_interval_count 150 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.865 _exptl_absorpt_correction_type none _exptl_crystal_colour clear _exptl_crystal_density_diffrn 1.395 _exptl_crystal_description prism _exptl_crystal_F_000 340 _exptl_crystal_size_max 0.30 _exptl_crystal_size_mid 0.30 _exptl_crystal_size_min 0.50 _refine_diff_density_max 0.14 _refine_diff_density_min -0.24 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_obs 1.81 _refine_ls_hydrogen_treatment refall _refine_ls_number_parameters 280 _refine_ls_number_reflns 2099 _refine_ls_R_factor_obs 0.042 _refine_ls_shift/esd_max 0.18 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_scheme 'calc w = 1/[\s^2^(F) + 0.005F^2^]' _refine_ls_wR_factor_obs 0.043 _reflns_number_observed 2099 _reflns_number_total 2288 _reflns_observed_criterion >3sigma(F) _[local]_cod_data_source_file as1096.cif _[local]_cod_data_source_block 9305TNK _cod_original_cell_volume 767.5(3) _cod_database_code 2003305 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 0.0366(9) 0.0331(9) 0.0339(9) 0.0119(8) 0.0127(7) 0.0070(7) C2 0.0423(13) 0.03180(10) 0.0312(12) 0.0102(10) 0.0093(10) 0.0045(9) C3 0.0386(12) 0.03600(10) 0.0370(12) 0.0118(10) 0.0115(10) 0.0077(9) C4 0.0444(13) 0.0364(2) 0.0419(13) 0.0150(10) 0.0163(11) 0.0113(9) N5 0.0447(11) 0.04390(10) 0.0306(10) 0.0141(9) 0.0110(8) 0.0003(8) C6 0.0416(13) 0.03400(10) 0.0346(12) 0.0094(10) 0.0118(10) 0.0089(9) C7 0.0430(14) 0.0676(8) 0.0498(16) 0.0214(13) 0.0112(12) 0.0098(13) O8 0.0701(12) 0.0934(4) 0.0471(10) 0.0528(11) 0.0216(9) 0.0196(9) C9 0.0735(19) 0.0856(2) 0.0465(16) 0.0479(18) 0.0245(14) 0.0159(15) C10 0.119(3) 0.1087(9) 0.070(2) 0.078(3) 0.043(2) 0.036(2) O11 0.0643(11) 0.0735(2) 0.0561(11) 0.0387(10) 0.0290(9) 0.0100(9) O12 0.0399(9) 0.06800(10) 0.0435(9) 0.0153(8) 0.0042(7) 0.0063(8) C13 0.0445(13) 0.0354(2) 0.0481(14) 0.0181(10) 0.0203(11) 0.0120(10) C14 0.0401(12) 0.03540(10) 0.0399(12) 0.0181(10) 0.0189(10) 0.0097(9) C15 0.0426(13) 0.0416(2) 0.0455(13) 0.0225(11) 0.0197(11) 0.0152(10) N16 0.0364(10) 0.0385(9) 0.0417(10) 0.0144(8) 0.0116(8) 0.0099(8) C17 0.0458(13) 0.0382(2) 0.0384(13) 0.0151(11) 0.0161(10) 0.0081(10) N18 0.0447(11) 0.03930(10) 0.0339(10) 0.0077(8) 0.0104(8) 0.0099(8) C19 0.0446(13) 0.0373(2) 0.0337(12) 0.0128(10) 0.0173(10) 0.0043(9) C20 0.0368(14) 0.0542(6) 0.0613(17) 0.0133(12) 0.0037(12) 0.0194(13) C21 0.101(3) 0.0534(9) 0.060(2) 0.0245(19) -0.003(2) -0.0017(16) O22 0.0522(10) 0.0432(9) 0.0520(10) 0.0056(8) 0.0124(8) 0.0164(8) O23 0.0479(9) 0.0487(9) 0.0357(9) 0.0057(8) 0.0092(7) 0.0046(7) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_calc_flag N1 0.3659(2) 0.88980(10) 0.6150(2) 0.0390(10) . C2 0.5234(2) 0.92010(10) 0.7236(2) 0.0410(10) . C3 0.6320(2) 0.89250(10) 0.6708(2) 0.0430(10) . C4 0.5830(2) 0.83000(10) 0.4882(2) 0.0460(10) . N5 0.4244(2) 0.80480(10) 0.3857(2) 0.0460(10) . C6 0.3092(2) 0.82860(10) 0.4390(2) 0.0430(10) . C7 0.8014(3) 0.9241(2) 0.7940(3) 0.0610(10) . O8 0.8101(2) 0.82060(10) 0.8643(2) 0.0760(10) . C9 0.7393(3) 0.7975(2) 1.0033(3) 0.0740(10) . C10 0.7432(5) 0.6827(3) 1.0597(5) 0.105(2) . O11 0.6707(2) 0.80160(10) 0.4208(2) 0.0700(10) . O12 0.17030(10) 0.80020(10) 0.3406(2) 0.0590(10) . C13 0.2472(2) 0.9132(2) 0.6864(3) 0.0470(10) . C14 0.1324(2) 0.79700(10) 0.7275(2) 0.0420(10) . C15 -0.0218(2) 0.7267(2) 0.6169(3) 0.0470(10) . N16 -0.1263(2) 0.61590(10) 0.6448(2) 0.0440(10) . C17 -0.0775(2) 0.57140(10) 0.7910(2) 0.0460(10) . N18 0.0793(2) 0.64530(10) 0.9064(2) 0.0460(10) . C19 0.1923(2) 0.75640(10) 0.8846(2) 0.0440(10) . C20 -0.2896(2) 0.5379(2) 0.5097(3) 0.0590(10) . C21 -0.2779(5) 0.4529(3) 0.3710(4) 0.0860(10) . O22 -0.16770(10) 0.47160(10) 0.8175(2) 0.0580(10) . O23 0.33280(10) 0.81100(10) 0.99530(10) 0.0530(10) . H2 0.545(2) 0.960(2) 0.844(3) 0.030(10) dum H5 0.392(3) 0.773(2) 0.267(3) 0.040(10) dum H7a 0.836(3) 0.994(2) 0.899(3) 0.040(10) dum H7b 0.877(3) 0.946(2) 0.721(3) 0.040(10) dum H9a 0.619(3) 0.802(2) 0.961(3) 0.050(10) dum H9b 0.819(3) 0.880(2) 1.108(3) 0.050(10) dum H10a 0.692(3) 0.665(2) 1.149(4) 0.060(10) dum H10b 0.869(3) 0.695(2) 1.111(3) 0.060(10) dum H10c 0.675(3) 0.597(2) 0.950(4) 0.060(10) dum H13a 0.181(2) 0.939(2) 0.590(3) 0.020(10) dum H13b 0.310(2) 0.983(2) 0.795(3) 0.030(10) dum H15 -0.070(2) 0.752(2) 0.507(3) 0.030(10) dum H18 0.117(3) 0.610(2) 1.011(3) 0.040(10) dum H20a -0.333(2) 0.597(2) 0.450(3) 0.030(10) dum H20b -0.350(3) 0.495(2) 0.579(3) 0.040(10) dum H21a -0.232(3) 0.400(2) 0.429(3) 0.040(10) dum H21b -0.209(3) 0.502(2) 0.303(3) 0.050(10) dum H21c -0.391(3) 0.400(2) 0.285(4) 0.060(10) dum loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C2 N1 C6 121.2(2) C2 N1 C13 120.80(10) C6 N1 C13 117.80(10) C3 C2 N1 123.70(10) C2 C3 C4 118.5(2) C2 C3 C7 122.4(2) C4 C3 C7 119.2(2) O11 C4 N5 119.8(2) O11 C4 C3 125.5(2) N5 C4 C3 114.7(2) C6 N5 C4 127.70(10) O12 C6 N5 123.3(2) O12 C6 N1 122.5(2) N5 C6 N1 114.10(10) O8 C7 C3 112.40(10) C9 O8 C7 112.8(2) O8 C9 C10 109.0(3) N1 C13 C14 110.9(2) C15 C14 C19 119.00(10) C15 C14 C13 121.6(2) C19 C14 C13 119.30(10) C14 C15 N16 123.1(2) C17 N16 C15 121.10(10) C17 N16 C20 118.60(10) C15 N16 C20 120.2(2) O22 C17 N16 122.30(10) O22 C17 N18 122.1(2) N16 C17 N18 115.60(10) C17 N18 C19 126.3(2) O23 C19 N18 119.6(2) O23 C19 C14 125.50(10) N18 C19 C14 114.90(10) N16 C20 C21 111.3(2) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance N1 C2 1.372(2) N1 C6 1.383(2) N1 C13 1.478(3) C2 C3 1.336(4) C3 C4 1.443(3) C3 C7 1.496(3) C4 O11 1.226(3) C4 N5 1.380(3) N5 C6 1.373(3) C6 O12 1.212(2) C7 O8 1.424(4) O8 C9 1.423(3) C9 C10 1.492(6) C13 C14 1.500(3) C14 C15 1.336(2) C14 C19 1.436(3) C15 N16 1.370(2) N16 C17 1.365(3) N16 C20 1.473(2) C17 O22 1.227(2) C17 N18 1.370(2) N18 C19 1.383(2) C19 O23 1.235(2) C20 C21 1.499(5)