#------------------------------------------------------------------------------ #$Date: 2012-02-03 17:16:24 +0000 (Fri, 03 Feb 2012) $ #$Revision: 32112 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/35/2003565.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2003565 loop_ _publ_author_name 'Kariuki, B. M.' 'Jones, W.' _publ_section_title ; Five Salts of Berberine ; _journal_issue 6 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1234 _journal_page_last 1240 _journal_volume 51 _journal_year 1995 _chemical_formula_moiety 'C20 H18 N O4 1+, Br 1-, 2H2 O' _chemical_formula_sum 'C20 H22 Br N O6' _chemical_formula_weight 452.30 _chemical_name_common 'Berberine bromide dihydrate' _space_group_IT_number 15 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-I 2ya' _symmetry_space_group_name_H-M 'I 1 2/a 1' _audit_creation_method SHELXL _cell_angle_alpha 90.00 _cell_angle_beta 110.180(10) _cell_angle_gamma 90.00 _cell_formula_units_Z 8 _cell_length_a 21.974(3) _cell_length_b 7.200(7) _cell_length_c 26.151(3) _cell_measurement_reflns_used 25 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 15 _cell_measurement_theta_min 7 _cell_volume 3883(4) _computing_cell_refinement 'CAD4 Software' _computing_data_collection 'CAD4 Software (Enraf Nonius, 1989)' _computing_molecular_graphics 'DTMM (Crabbe & Appleyard, 1991)' _computing_publication_material SHELXL-92 _computing_structure_refinement 'SHELXL-92 (Sheldrick, 1992)' _computing_structure_solution 'SHELXS-86 (Sheldrick, 1985)' _diffrn_ambient_temperature 293(2) _diffrn_measurement_device 'Enraf Nonius CAD4' _diffrn_measurement_method '2\q/\w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71069 _diffrn_reflns_av_R_equivalents 0.0540 _diffrn_reflns_av_sigmaI/netI 0.7556 _diffrn_reflns_limit_h_max 24 _diffrn_reflns_limit_h_min -26 _diffrn_reflns_limit_k_max 8 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 31 _diffrn_reflns_limit_l_min 0 _diffrn_reflns_number 3485 _diffrn_reflns_theta_max 24.97 _diffrn_reflns_theta_min 1.66 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 100 _diffrn_standards_interval_time 60 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 2.154 _exptl_absorpt_correction_type none _exptl_crystal_colour Orange _exptl_crystal_density_diffrn 1.547 _exptl_crystal_description Plates _exptl_crystal_F_000 1856 _exptl_crystal_size_max 0.4 _exptl_crystal_size_mid 0.2 _exptl_crystal_size_min 0.1 _refine_diff_density_max 0.340 _refine_diff_density_min -0.310 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_all 0.831 _refine_ls_goodness_of_fit_obs 1.189 _refine_ls_matrix_type full _refine_ls_number_parameters 267 _refine_ls_number_reflns 3398 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 0.849 _refine_ls_restrained_S_obs 1.189 _refine_ls_R_factor_all 0.1631 _refine_ls_R_factor_obs 0.0471 _refine_ls_shift/esd_max -0.183 _refine_ls_shift/esd_mean 0.010 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_scheme ;calc w = 1/[\s^2^(F~o~^2^)+(0.0394P)^2^+0.0000P] where P = (F~o~^2^+2F~c~^2^)/3 ; _refine_ls_wR_factor_all 0.0971 _refine_ls_wR_factor_obs 0.0839 _reflns_number_observed 1454 _reflns_number_total 3400 _reflns_observed_criterion >2sigma(I) _[local]_cod_data_source_file hu1131.cif _[local]_cod_data_source_block III _[local]_cod_cif_authors_sg_H-M 'I 2/a' _cod_depositor_comments ; The following automatic conversions were performed: '_exptl_absorpt_correction_type' value 'None' changed to 'none' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. '_exptl_absorpt_correction_type' value 'None' changed to 'none' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 3883.(4) _cod_database_code 2003565 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' 'x+1/2, -y, z' 'x+1/2, y+1/2, z+1/2' 'x+1, -y+1/2, z+1/2' '-x, -y, -z' '-x-1/2, y, -z' '-x+1/2, -y+1/2, -z+1/2' '-x, y+1/2, -z+1/2' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_22 _atom_site_aniso_U_23 _atom_site_aniso_U_33 Br1 0.0457(3) -0.0022(4) 0.0244(2) 0.0645(4) -0.0008(4) 0.0597(4) N1 0.029(2) -0.006(2) 0.022(2) 0.034(2) -0.004(2) 0.043(2) O1 0.061(2) 0.004(2) 0.028(2) 0.107(3) -0.002(2) 0.042(2) O2 0.062(3) 0.007(2) 0.019(2) 0.100(4) -0.003(2) 0.042(2) O3 0.046(2) -0.006(2) 0.028(2) 0.074(3) 0.003(2) 0.048(2) O4 0.040(2) -0.003(2) 0.007(2) 0.090(3) -0.001(2) 0.040(2) O5 0.065(3) 0.001(3) 0.024(2) 0.074(3) -0.008(3) 0.067(3) O6 0.061(3) 0.001(2) 0.026(3) 0.070(4) -0.001(3) 0.102(4) C1 0.072(4) 0.007(4) 0.032(4) 0.089(5) -0.003(4) 0.048(4) C2 0.051(3) 0.003(3) 0.010(3) 0.040(4) 0.003(3) 0.029(3) C3 0.048(3) 0.000(3) 0.024(3) 0.042(4) 0.002(3) 0.038(3) C4 0.034(3) -0.004(3) 0.010(2) 0.045(4) -0.002(3) 0.045(3) C5 0.042(3) -0.003(3) 0.019(2) 0.029(3) -0.004(3) 0.031(3) C6 0.038(3) 0.002(2) 0.019(3) 0.045(4) -0.002(3) 0.042(3) C7 0.030(2) 0.000(3) 0.016(2) 0.032(3) 0.006(3) 0.043(3) C8 0.033(3) 0.002(3) 0.018(2) 0.021(3) 0.002(3) 0.043(3) C9 0.033(3) -0.010(3) 0.019(2) 0.057(4) -0.008(3) 0.044(3) C10 0.027(2) 0.006(3) 0.010(2) 0.048(3) -0.002(3) 0.042(3) C11 0.034(3) 0.001(2) 0.015(2) 0.036(4) -0.005(3) 0.037(3) C12 0.031(3) 0.001(2) 0.015(2) 0.024(3) -0.002(2) 0.039(3) C13 0.032(3) 0.004(2) 0.022(2) 0.028(4) 0.002(2) 0.046(3) C14 0.027(2) 0.001(2) 0.015(2) 0.026(3) 0.002(3) 0.043(3) C15 0.026(3) -0.005(3) 0.018(2) 0.045(4) 0.006(3) 0.055(4) C16 0.027(3) -0.003(2) 0.007(2) 0.042(4) 0.002(3) 0.048(3) C17 0.040(3) -0.002(3) 0.010(3) 0.046(4) 0.008(3) 0.039(3) C18 0.036(3) 0.001(3) 0.021(2) 0.036(3) 0.000(3) 0.045(3) C19 0.049(4) -0.012(3) 0.004(3) 0.068(5) 0.001(3) 0.062(4) C20 0.083(5) -0.006(5) 0.059(4) 0.110(6) -0.032(5) 0.092(5) loop_ _atom_site_label _atom_site_occupancy _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_type_symbol Br1 1 0.46789(3) 0.04315(9) 0.15465(2) 0.0550(2) Uani d . Br N1 1 0.34419(15) 0.0578(6) 0.25951(15) 0.0329(9) Uani d . N O1 1 0.2990(2) 0.1342(6) 0.47653(15) 0.0673(12) Uani d . O O2 1 0.4105(2) 0.1272(6) 0.51686(14) 0.0680(12) Uani d . O O3 1 0.27591(14) -0.0250(5) 0.09475(13) 0.0531(10) Uani d . O O4 1 0.1487(2) -0.1000(5) 0.04144(13) 0.0583(11) Uani d . O O5 1 0.5670(2) 0.2033(6) 0.2741(2) 0.0682(13) Uani d . O H51 1 0.5320(26) 0.2101(84) 0.2445(23) 0.082 Uiso d . H H52 1 0.5504(26) 0.3115(78) 0.2952(21) 0.082 Uiso d . H O6 1 0.3699(2) 0.4000(7) 0.1663(2) 0.0785(15) Uani d . O H61 1 0.3916(29) 0.5211(86) 0.1773(24) 0.094 Uiso d . H H62 1 0.3896(31) 0.3033(91) 0.1607(25) 0.094 Uiso d . H C1 1 0.3505(3) 0.1613(9) 0.5260(2) 0.067(2) Uani d . C H11 1 0.3463(3) 0.0768(9) 0.5535(2) 0.080 Uiso calc R H H12 1 0.3498(3) 0.2875(9) 0.5388(2) 0.080 Uiso calc R H C2 1 0.3929(2) 0.1064(7) 0.4616(2) 0.0406(14) Uani d . C C3 1 0.3273(2) 0.1134(7) 0.4375(2) 0.0405(14) Uani d . C C4 1 0.4330(2) 0.0865(7) 0.4317(2) 0.0423(14) Uani d . C H41 1 0.4779(2) 0.0856(7) 0.4483(2) 0.051 Uiso calc R H C5 1 0.4036(2) 0.0678(7) 0.3754(2) 0.0328(11) Uani d . C C6 1 0.2968(2) 0.0953(6) 0.3829(2) 0.0406(14) Uani d . C H611 1 0.2519(2) 0.0982(6) 0.3673(2) 0.049 Uiso calc R H C7 1 0.3365(2) 0.0720(7) 0.3510(2) 0.0341(12) Uani d . C C8 1 0.3057(2) 0.0432(7) 0.2920(2) 0.0311(11) Uani d . C C9 1 0.4121(2) 0.1229(7) 0.2853(2) 0.0431(14) Uani d . C H91 1 0.4124(2) 0.2568(7) 0.2894(2) 0.052 Uiso calc R H H92 1 0.4365(2) 0.0929(7) 0.2618(2) 0.052 Uiso calc R H C10 1 0.4439(2) 0.0347(8) 0.3399(2) 0.0394(12) Uani d . C H101 1 0.4868(2) 0.0871(8) 0.3571(2) 0.047 Uiso calc R H H102 1 0.4486(2) -0.0977(8) 0.3355(2) 0.047 Uiso calc R H C11 1 0.3225(2) 0.0231(7) 0.2067(2) 0.0351(12) Uani d . C H111 1 0.3510(2) 0.0283(7) 0.1875(2) 0.042 Uiso calc R H C12 1 0.2575(2) -0.0212(6) 0.1793(2) 0.0308(11) Uani d . C C13 1 0.2421(2) -0.0031(6) 0.2662(2) 0.0330(13) Uani d . C H131 1 0.2155(2) -0.0161(6) 0.2870(2) 0.040 Uiso calc R H C14 1 0.2153(2) -0.0317(7) 0.2100(2) 0.0311(11) Uani d . C C15 1 0.1500(2) -0.0728(7) 0.1818(2) 0.0407(13) Uani d . C H151 1 0.1216(2) -0.0853(7) 0.2010(2) 0.049 Uiso calc R H C16 1 0.1277(2) -0.0948(6) 0.1269(2) 0.0405(13) Uani d . C H161 1 0.0839(2) -0.1188(6) 0.1091(2) 0.049 Uiso calc R H C17 1 0.1690(2) -0.0823(7) 0.0961(2) 0.0427(14) Uani d . C C18 1 0.2340(2) -0.0496(7) 0.1221(2) 0.0371(11) Uani d . C C19 1 0.0805(2) -0.1067(8) 0.0108(2) 0.064(2) Uani d . C H191 1 0.0742(2) -0.1196(8) -0.0272(2) 0.095(12) Uiso calc R H H192 1 0.0604(2) 0.0059(8) 0.0165(2) 0.095(12) Uiso calc R H H193 1 0.0615(2) -0.2109(8) 0.0226(2) 0.095(12) Uiso calc R H C20 1 0.2958(3) -0.1895(10) 0.0755(3) 0.087(2) Uani d . C H201 1 0.3252(3) -0.1588(10) 0.0568(3) 0.144(17) Uiso calc R H H202 1 0.2586(3) -0.2518(10) 0.0509(3) 0.144(17) Uiso calc R H H203 1 0.3172(3) -0.2696(10) 0.1057(3) 0.144(17) Uiso calc R H loop_ _atom_type_symbol _atom_type_description _atom_type_scat_source _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag C C 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' 0.0033 0.001 H H 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' 0.0000 0.000 N N 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' 0.0061 0.003 O O 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' 0.0106 0.006 Br Br 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' -0.2901 2. loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C11 N1 C8 123.2(4) y C11 N1 C9 118.6(3) y C8 N1 C9 118.2(4) y C3 O1 C1 105.7(4) y C2 O2 C1 104.7(4) y C18 O3 C20 115.3(4) y C17 O4 C19 119.7(4) y H51 O5 H52 93.(5) ? H61 O6 H62 123.(6) ? O1 C1 O2 108.4(4) y O1 C1 H11 110.0(3) ? O2 C1 H11 110.0(3) ? O1 C1 H12 110.0(3) ? O2 C1 H12 110.0(3) ? H11 C1 H12 108.4 ? C3 C2 O2 110.7(4) y C3 C2 C4 121.8(5) y O2 C2 C4 127.5(5) y C2 C3 C6 122.9(5) y C2 C3 O1 109.8(4) y C6 C3 O1 127.2(5) y C2 C4 C5 117.1(4) y C2 C4 H41 121.5(3) ? C5 C4 H41 121.5(3) ? C7 C5 C4 121.0(4) y C7 C5 C10 118.5(4) y C4 C5 C10 120.5(4) y C3 C6 C7 116.9(4) y C3 C6 H611 121.6(3) ? C7 C6 H611 121.6(3) ? C5 C7 C6 120.4(4) y C5 C7 C8 120.6(4) y C6 C7 C8 118.9(4) y C13 C8 N1 116.8(4) y C13 C8 C7 124.9(4) y N1 C8 C7 118.2(4) y N1 C9 C10 111.4(4) y N1 C9 H91 109.4(3) ? C10 C9 H91 109.4(3) ? N1 C9 H92 109.4(2) ? C10 C9 H92 109.4(2) ? H91 C9 H92 108.0 ? C9 C10 C5 109.9(4) y C9 C10 H101 109.7(3) ? C5 C10 H101 109.7(2) ? C9 C10 H102 109.7(3) ? C5 C10 H102 109.7(3) ? H101 C10 H102 108.2 ? N1 C11 C12 121.2(4) y N1 C11 H111 119.4(2) ? C12 C11 H111 119.4(3) ? C11 C12 C18 120.8(4) y C11 C12 C14 118.1(4) y C18 C12 C14 121.1(4) y C8 C13 C14 122.8(4) y C8 C13 H131 118.6(3) ? C14 C13 H131 118.6(2) ? C13 C14 C15 124.6(4) y C13 C14 C12 117.8(4) y C15 C14 C12 117.6(4) y C16 C15 C14 120.8(4) y C16 C15 H151 119.6(3) ? C14 C15 H151 119.6(3) ? C15 C16 C17 121.9(4) y C15 C16 H161 119.1(3) ? C17 C16 H161 119.1(3) ? O4 C17 C18 116.6(4) y O4 C17 C16 123.9(4) y C18 C17 C16 119.5(4) y O3 C18 C17 122.6(4) y O3 C18 C12 118.0(4) y C17 C18 C12 119.0(4) y O4 C19 H191 109.5(3) ? O4 C19 H192 109.5(3) ? H191 C19 H192 109.5 ? O4 C19 H193 109.5(3) ? H191 C19 H193 109.5 ? H192 C19 H193 109.5 ? O3 C20 H201 109.5(3) ? O3 C20 H202 109.5(3) ? H201 C20 H202 109.5 ? O3 C20 H203 109.4(3) ? H201 C20 H203 109.5 ? H202 C20 H203 109.5 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag N1 C11 . 1.320(5) y N1 C8 . 1.393(5) y N1 C9 . 1.485(5) y O1 C3 . 1.376(5) y O1 C1 . 1.409(6) y O2 C2 . 1.370(5) y O2 C1 . 1.439(6) y O3 C18 . 1.358(5) y O3 C20 . 1.414(7) y O4 C17 . 1.349(5) y O4 C19 . 1.435(6) y O5 H51 . 0.89(5) ? O5 H52 . 1.09(6) ? O6 H61 . 0.99(6) ? O6 H62 . 0.86(6) ? C1 H11 . 0.97 ? C1 H12 . 0.97 ? C2 C3 . 1.359(6) y C2 C4 . 1.373(6) y C3 C6 . 1.358(6) y C4 C5 . 1.397(6) y C4 H41 . 0.93 ? C5 C7 . 1.390(6) y C5 C10 . 1.506(5) y C6 C7 . 1.409(6) y C6 H611 . 0.93 ? C7 C8 . 1.470(6) y C8 C13 . 1.368(6) y C9 C10 . 1.499(6) y C9 H91 . 0.97 ? C9 H92 . 0.97 ? C10 H101 . 0.97 ? C10 H102 . 0.97 ? C11 C12 . 1.395(6) y C11 H111 . 0.93 ? C12 C18 . 1.417(6) y C12 C14 . 1.424(6) y C13 C14 . 1.398(6) y C13 H131 . 0.93 ? C14 C15 . 1.400(6) y C15 C16 . 1.358(6) y C15 H151 . 0.93 ? C16 C17 . 1.408(6) y C16 H161 . 0.93 ? C17 C18 . 1.375(6) y C19 H191 . 0.96 ? C19 H192 . 0.96 ? C19 H193 . 0.96 ? C20 H201 . 0.96 ? C20 H202 . 0.96 ? C20 H203 . 0.96 ? Br1 O5 8_645 3.323(5) y Br1 O5 . 3.337(4) y Br1 O6 . 3.433(5) y O5 O6 8_645 2.763(6) y