#------------------------------------------------------------------------------ #$Date: 2016-02-19 14:29:56 +0000 (Fri, 19 Feb 2016) $ #$Revision: 176759 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/50/2005035.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2005035 loop_ _publ_author_name 'Song, B.-L.' 'Xiong, R.-G.' 'Wang, H.' 'Zuo, J.-L.' 'You, X.-Z.' 'Fun, H.-K.' 'Sivakumar, K.' _publ_section_title ; Bis[1-hydroxy-2(1H)-pyridinethionato-O,S]palladium(II) ; _journal_issue 6 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1403 _journal_page_last 1405 _journal_paper_doi 10.1107/S0108270196001539 _journal_volume 52 _journal_year 1996 _chemical_formula_iupac '[Pd1 (C5 H4 N1 O1 S1)2]' _chemical_formula_sum 'C10 H8 N2 O2 Pd S2' _chemical_formula_weight 358.70 _chemical_name_systematic ; Bis[1-hydroxy-2(1H)-pyridinethionato-O,S']palladium(II). ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _audit_creation_method SHELXL _cell_angle_alpha 90.00 _cell_angle_beta 96.660(10) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 8.6820(10) _cell_length_b 13.9830(10) _cell_length_c 9.9560(10) _cell_measurement_reflns_used 25 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 25 _cell_measurement_theta_min 8 _cell_volume 1200.5(2) _computing_cell_refinement XSCANS _computing_data_collection 'XSCANS (Siemens, 1994)' _computing_data_reduction XSCANS _computing_molecular_graphics SHELXTL/PC _computing_publication_material 'SHELXL93. Geometrical calculations: PARST (Nardelli, 1983)' _computing_structure_refinement 'SHELXL93 (Sheldrick, 1993)' _computing_structure_solution 'SHELXTL/PC (Sheldrick, 1990)' _diffrn_ambient_temperature 293(2) _diffrn_measurement_device 'Siemens P4' _diffrn_measurement_method \q/2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0244 _diffrn_reflns_av_sigmaI/netI 0.0267 _diffrn_reflns_limit_h_max 11 _diffrn_reflns_limit_h_min -1 _diffrn_reflns_limit_k_max 18 _diffrn_reflns_limit_k_min -1 _diffrn_reflns_limit_l_max 12 _diffrn_reflns_limit_l_min -12 _diffrn_reflns_number 3553 _diffrn_reflns_theta_max 27.49 _diffrn_reflns_theta_min 2.52 _diffrn_standards_decay_% <3 _diffrn_standards_interval_count 97 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 1.882 _exptl_absorpt_correction_T_max 0.920 _exptl_absorpt_correction_T_min 0.740 _exptl_absorpt_correction_type 'empirical via \y scans (XSCANS; Siemens, 1994)' _exptl_crystal_colour Red--brown _exptl_crystal_density_diffrn 1.985 _exptl_crystal_description 'thick plate' _exptl_crystal_F_000 704 _exptl_crystal_size_max 0.56 _exptl_crystal_size_mid 0.30 _exptl_crystal_size_min 0.10 _refine_diff_density_max 1.10 _refine_diff_density_min -0.58 _refine_ls_extinction_coef 0.0029(4) _refine_ls_extinction_method SHELXL93 _refine_ls_goodness_of_fit_all 1.024 _refine_ls_goodness_of_fit_obs 1.065 _refine_ls_hydrogen_treatment refall _refine_ls_matrix_type full _refine_ls_number_parameters 187 _refine_ls_number_reflns 2756 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.024 _refine_ls_restrained_S_obs 1.065 _refine_ls_R_factor_all 0.0288 _refine_ls_R_factor_obs 0.0257 _refine_ls_shift/esd_max 0.002 _refine_ls_shift/esd_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_scheme ; calc w = 1/[\s^2^(F~o~^2^) + (0.0453P)^2^] where P = (F~o~^2^ + 2F~c~^2^)/3 ; _refine_ls_wR_factor_all 0.0702 _refine_ls_wR_factor_obs 0.0687 _reflns_number_observed 2465 _reflns_number_total 2756 _reflns_observed_criterion >2sigma(I) _cod_data_source_file mu1242.cif _cod_data_source_block apdpt _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. '_geom_bond_publ_flag' value 'Yes' changed to 'yes' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (8 times). '_geom_angle_publ_flag' value 'Yes' changed to 'yes' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (10 times). Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_sg_symbol_H-M 'P 21/n' _cod_database_code 2005035 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Pd 0.03675(12) 0.03611(12) 0.03624(12) 0.00093(6) -0.00197(8) 0.00150(6) S1 0.0455(3) 0.0444(3) 0.0567(4) 0.0077(3) -0.0073(3) 0.0086(3) S2 0.0412(3) 0.0496(3) 0.0460(3) 0.0015(2) -0.0087(2) -0.0012(2) O1 0.0436(8) 0.0309(8) 0.0581(10) 0.0008(6) -0.0109(7) 0.0036(7) O2 0.0465(9) 0.0351(8) 0.0551(9) -0.0030(7) -0.0161(8) 0.0001(7) N1 0.0434(10) 0.0320(9) 0.0386(9) 0.0011(8) 0.0046(8) 0.0001(7) N2 0.0420(10) 0.0386(10) 0.0364(9) -0.0057(7) -0.0002(8) -0.0021(7) C1 0.0451(12) 0.0386(11) 0.0393(11) 0.0061(9) 0.0085(9) 0.0036(9) C2 0.067(2) 0.0359(12) 0.055(2) 0.0136(12) 0.0105(13) 0.0037(11) C3 0.079(2) 0.0357(12) 0.0562(14) 0.0011(12) 0.0215(14) -0.0041(10) C4 0.062(2) 0.0428(13) 0.0490(13) -0.0100(12) 0.0117(12) -0.0088(10) C5 0.0472(13) 0.0419(12) 0.0451(12) -0.0025(10) 0.0037(10) -0.0028(10) C6 0.0403(11) 0.0445(12) 0.0328(10) -0.0051(9) 0.0039(8) -0.0031(9) C7 0.0466(13) 0.0568(15) 0.0443(12) -0.0130(11) 0.0026(10) -0.0060(11) C8 0.065(2) 0.0508(15) 0.0512(14) -0.0201(13) 0.0089(13) -0.0088(11) C9 0.072(2) 0.0395(14) 0.055(2) -0.0050(12) 0.0113(13) -0.0016(10) C10 0.0541(14) 0.0434(13) 0.0489(13) -0.0012(11) -0.0012(12) 0.0017(10) loop_ _atom_site_label _atom_site_occupancy _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_type_symbol Pd 1 .10212(2) .935504(12) .85106(2) .03686(9) Uani d Pd S1 1 .02076(8) 1.08333(5) .79578(7) .0499(2) Uani d S S2 1 -0.10097(7) .86091(5) .73816(6) .0467(2) Uani d S O1 1 .2907(2) .99930(11) .9532(2) .0455(4) Uani d O O2 1 .1817(2) .80262(12) .9065(2) .0473(4) Uani d O N1 1 .2881(2) 1.09602(14) .9554(2) .0380(4) Uani d N N2 1 .0898(2) .7295(2) .8590(2) .0394(4) Uani d N C1 1 .1679(3) 1.1449(2) .8897(2) .0407(5) Uani d C C2 1 .1732(4) 1.2454(2) .8995(3) .0523(7) Uani d C C3 1 .2948(4) 1.2902(2) .9717(3) .0557(7) Uani d C C4 1 .4158(4) 1.2371(2) 1.0344(3) .0507(6) Uani d C C5 1 .4119(3) 1.1399(2) 1.0258(2) .0449(5) Uani d C C6 1 -.0433(3) .7449(2) .7773(2) .0392(5) Uani d C C7 1 -0.1299(3) .6649(2) .7294(3) .0494(6) Uani d C C8 1 -.0830(4) .5752(2) .7662(3) .0556(7) Uani d C C9 1 .0534(4) .5622(2) .8519(3) .0551(7) Uani d C C10 1 .1383(4) .6402(2) .8964(3) .0494(6) Uani d C H2 1 .094(4) 1.268(3) .859(3) .060(10) Uiso d H H3 1 .290(5) 1.367(3) .972(4) .084(12) Uiso d H H4 1 .499(5) 1.270(3) 1.075(4) .093(13) Uiso d H H5 1 .489(3) 1.1003(19) 1.064(3) .033(6) Uiso d H H7 1 -0.219(4) .675(2) .666(3) .065(9) Uiso d H H8 1 -0.134(4) .522(3) .733(4) .075(11) Uiso d H H9 1 .101(4) .499(4) .873(5) .096(14) Uiso d H H10 1 .226(4) .638(2) .942(3) .058(9) Uiso d H loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Pd Pd -0.9988 1.0072 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag O1 Pd O2 92.09(6) yes O1 Pd S1 86.01(5) yes O2 Pd S1 178.03(5) yes O1 Pd S2 178.13(5) yes O2 Pd S2 86.20(5) yes S1 Pd S2 95.71(3) yes C1 S1 Pd 97.78(8) yes C6 S2 Pd 97.67(8) yes N1 O1 Pd 115.67(13) yes N2 O2 Pd 115.39(13) yes C1 N1 O1 120.8(2) ? C1 N1 C5 122.8(2) ? O1 N1 C5 116.4(2) ? O2 N2 C6 121.3(2) ? O2 N2 C10 116.7(2) ? C6 N2 C10 121.9(2) ? N1 C1 C2 117.0(2) ? N1 C1 S1 119.5(2) ? C2 C1 S1 123.5(2) ? C3 C2 C1 120.9(3) ? C2 C3 C4 119.8(3) ? C5 C4 C3 119.9(3) ? N1 C5 C4 119.6(3) ? N2 C6 C7 117.7(2) ? N2 C6 S2 119.4(2) ? C7 C6 S2 122.9(2) ? C8 C7 C6 121.0(3) ? C7 C8 C9 119.6(2) ? C10 C9 C8 119.1(3) ? N2 C10 C9 120.6(3) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag Pd O1 2.031(2) yes Pd O2 2.036(2) yes Pd S1 2.2325(7) yes Pd S2 2.2362(7) yes S1 C1 1.724(3) yes S2 C6 1.729(3) yes O1 N1 1.353(2) yes O2 N2 1.349(3) yes N1 C1 1.351(3) ? N1 C5 1.360(3) ? N2 C6 1.351(3) ? N2 C10 1.355(4) ? C1 C2 1.409(4) ? C2 C3 1.359(5) ? C3 C4 1.375(5) ? C4 C5 1.362(4) ? C6 C7 1.401(3) ? C7 C8 1.356(4) ? C8 C9 1.389(5) ? C9 C10 1.361(4) ?