#------------------------------------------------------------------------------ #$Date: 2016-02-14 14:26:36 +0000 (Sun, 14 Feb 2016) $ #$Revision: 176435 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/51/2005120.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2005120 loop_ _publ_author_name 'Neves, A.' 'Vencato, I.' 'Verani, C. N.' _publ_contact_author ; Dr Ivo Vencato Departamento F\'isica UFSC 88040-900 Florian\'opolis SC Brazil ; _publ_section_title ; Bis[2-(2-pyridylmethylaminomethyl)phenol]copper(II) Diacetate Trihydrate [Cu(HBPA)~2~](CH~3~COO)~2~.3H~2~O ; _journal_issue 7 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1648 _journal_page_last 1651 _journal_paper_doi 10.1107/S0108270196000108 _journal_volume 52 _journal_year 1996 _chemical_formula_iupac '[Cu1 (C13 H14 N2 O)2] (C H3 O2)2 , 3H2 O1' _chemical_formula_moiety '[Cu1 (C26 H28 N4 O2)] 2+, 2(C H3 C O2) -, 3(H2 O1)' _chemical_formula_sum 'C30 H40 Cu N4 O9' _chemical_formula_weight 664.21 _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_type_scat_source 'MolEN (Fair, 1990)' _cell_angle_alpha 106.880(10) _cell_angle_beta 102.950(10) _cell_angle_gamma 94.380(10) _cell_formula_units_Z 2 _cell_length_a 11.3560(10) _cell_length_b 11.8620(10) _cell_length_c 12.9890(10) _cell_measurement_reflns_used 25 _cell_measurement_temperature 298 _cell_measurement_theta_max 15.36 _cell_measurement_theta_min 9.70 _cell_volume 1612.8(3) _computing_cell_refinement MolEN _computing_data_collection 'CAD4-Express (Nonius, 1993)' _computing_data_reduction MolEN _computing_molecular_graphics 'ORTEPII (Johnson, 1976)' _computing_publication_material MolEN _computing_structure_refinement MolEN _computing_structure_solution 'SIR92 (Burla et al., 1992)' _diffrn_measurement_device 'Nonius CAD-4' _diffrn_measurement_method \w/2\q _diffrn_radiation_type Mo _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0160 _diffrn_reflns_limit_h_max 13 _diffrn_reflns_limit_h_min -13 _diffrn_reflns_limit_k_max 14 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 14 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_number 5668 _diffrn_reflns_theta_max 24.97 _diffrn_standards_decay_% -3.6 _diffrn_standards_interval_time 120 _diffrn_standards_number 2 _exptl_absorpt_coefficient_mu 0.732 _exptl_absorpt_correction_T_max 0.9998 _exptl_absorpt_correction_T_min 0.9694 _exptl_absorpt_correction_type 'empirical, \y scan (North, Phillips & Mathews, 1968)' _exptl_crystal_colour violet _exptl_crystal_density_diffrn 1.368 _exptl_crystal_description prismatic _exptl_crystal_F_000 698 _exptl_crystal_size_max 0.55 _exptl_crystal_size_mid 0.45 _exptl_crystal_size_min 0.40 _refine_diff_density_max 0.801 _refine_diff_density_min -0.146 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_obs 1.96 _refine_ls_hydrogen_treatment noref _refine_ls_matrix_type full _refine_ls_number_parameters 397 _refine_ls_number_reflns 4550 _refine_ls_R_factor_all 0.080 _refine_ls_R_factor_obs 0.0609 _refine_ls_shift/esd_max 0.252 _refine_ls_structure_factor_coef F _refine_ls_weighting_details 'w = 1/\s^2^(F)' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_obs 0.0823 _reflns_number_observed 4550 _reflns_number_total 5367 _reflns_observed_criterion 'F > 6.0\s(F)' _cod_data_source_file fg1104.cif _cod_data_source_block default _cod_depositor_comments ; Adding _atom_site_type_symbol label and values. Antanas Vaitkus 2013-04-02 The following automatic conversions were performed: '_refine_ls_weighting_scheme' value 'w = 1/\s^2^(F)' was changed to 'calc'. New tag '_refine_ls_weighting_details' was created. The value of the new tag was set to 'w = 1/\s^2^(F)'. Automatic conversion script Id: cif_fix_values 3143 2015-03-26 13:38:13Z robertas ; _cod_original_cell_volume 1612.80(10) _cod_original_formula_sum 'Cu1 C30 H40 N4 O9' _cod_database_code 2005120 loop_ _symmetry_equiv_pos_as_xyz x,y,z -x,-y,-z loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Cu 0.0402(3) 0.0294(3) 0.0333(3) 0.0065(3) 0.0149(2) 0.0094(2) O1 0.040(2) 0.034(2) 0.055(2) 0.005(2) 0.012(2) 0.017(2) O2 0.044(2) 0.039(2) 0.047(2) 0.006(2) 0.009(2) 0.013(2) N1 0.045(3) 0.031(2) 0.038(2) 0.011(2) 0.013(2) 0.014(2) N2 0.041(3) 0.031(2) 0.035(2) 0.007(2) 0.010(2) 0.010(2) N31 0.048(3) 0.039(2) 0.037(2) 0.008(2) 0.018(2) 0.012(2) N41 0.039(2) 0.037(2) 0.034(2) 0.005(2) 0.014(2) 0.008(2) C1 0.041(3) 0.032(3) 0.050(3) 0.008(3) 0.006(3) 0.006(3) C2 0.046(3) 0.034(3) 0.045(3) 0.008(3) 0.007(3) 0.002(3) C3 0.054(3) 0.050(3) 0.046(3) 0.022(3) 0.024(2) 0.026(2) C4 0.052(3) 0.042(3) 0.039(3) 0.015(3) 0.019(2) 0.017(2) C11 0.040(3) 0.033(3) 0.038(3) 0.002(3) 0.006(2) 0.008(2) C12 0.043(3) 0.031(3) 0.044(3) 0.001(3) 0.006(3) 0.011(2) C13 0.059(4) 0.045(3) 0.061(4) -0.010(3) 0.009(3) 0.018(3) C14 0.063(4) 0.064(4) 0.071(4) -0.014(4) 0.016(3) 0.022(3) C15 0.053(4) 0.063(4) 0.065(4) -0.003(4) 0.019(3) 0.013(3) C16 0.041(3) 0.052(4) 0.055(4) 0.004(3) 0.014(3) 0.009(3) C21 0.044(3) 0.039(3) 0.036(3) 0.002(3) 0.007(3) 0.003(2) C22 0.046(3) 0.037(3) 0.036(3) 0.000(3) 0.003(3) 0.004(2) C23 0.056(4) 0.053(4) 0.064(4) -0.012(3) 0.007(3) 0.016(3) C24 0.067(5) 0.079(5) 0.084(5) -0.012(4) 0.020(4) 0.023(4) C25 0.057(4) 0.085(6) 0.077(5) -0.007(4) 0.021(4) 0.010(4) C26 0.045(4) 0.063(4) 0.058(4) 0.004(3) 0.013(3) 0.005(3) C32 0.045(3) 0.045(3) 0.037(3) 0.010(3) 0.014(2) 0.018(2) C33 0.053(4) 0.063(4) 0.057(3) 0.012(3) 0.026(3) 0.028(3) C34 0.064(4) 0.072(4) 0.066(4) 0.013(4) 0.034(3) 0.027(3) C35 0.069(4) 0.063(4) 0.061(4) 0.016(4) 0.037(3) 0.015(3) C36 0.064(4) 0.048(4) 0.047(3) 0.013(3) 0.030(3) 0.008(3) C42 0.031(3) 0.040(3) 0.036(3) 0.002(2) 0.009(2) 0.012(2) C43 0.045(3) 0.059(4) 0.046(3) 0.002(3) 0.019(2) 0.017(3) C44 0.054(4) 0.064(4) 0.052(3) 0.002(3) 0.027(3) 0.015(3) C45 0.055(4) 0.057(4) 0.053(3) 0.004(3) 0.027(3) 0.007(3) C46 0.048(3) 0.043(3) 0.046(3) 0.005(3) 0.020(3) 0.004(3) O1a 0.050(3) 0.035(2) 0.095(3) 0.009(2) 0.001(3) 0.015(2) O2a 0.051(2) 0.048(2) 0.059(2) 0.015(2) 0.015(2) 0.016(2) C1a 0.037(3) 0.037(3) 0.072(4) 0.010(2) 0.020(3) 0.022(2) C2a 0.089(5) 0.046(3) 0.101(5) 0.022(3) 0.001(4) 0.039(3) O1b 0.072(3) 0.048(2) 0.071(3) 0.018(2) -0.005(3) 0.016(2) O2b 0.048(2) 0.059(2) 0.051(2) 0.017(2) 0.008(2) 0.017(2) C1b 0.049(3) 0.048(3) 0.061(3) 0.014(3) 0.020(3) 0.027(2) C2b 0.092(5) 0.056(3) 0.088(5) 0.036(3) -0.002(4) 0.028(3) Ow1 0.102(5) 0.120(5) 0.095(5) 0.022(4) -0.002(4) 0.022(4) Ow2 0.070(3) 0.053(3) 0.063(3) 0.003(2) 0.014(2) 0.018(2) Ow3 0.110(4) 0.068(4) 0.088(4) -0.011(3) 0.041(3) -0.007(3) loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv Cu Cu .22505(7) .23005(6) .24556(6) 2.640(10) O1 O .4365(4) .2653(4) .3682(4) 3.40(10) O2 O .0161(4) .1874(4) .1264(4) 3.50(10) N1 N .2379(5) .4055(4) .2683(4) 2.90(10) N2 N .2179(5) .0567(4) .2305(4) 2.80(10) N31 N .3175(5) .2315(4) .1263(4) 3.20(10) N41 N .1447(4) .2336(4) .3720(4) 2.90(10) C1 C .3362(6) .4777(5) .3717(5) 3.40(10) C2 C .1142(6) -.0204(6) .1374(5) 3.50(10) C3 C .2533(6) .4257(6) .1634(5) 3.60(10) C4 C .2176(6) .0430(5) .3416(5) 3.30(10) C11 C .5106(6) .3548(5) .3563(5) 3.10(10) C12 C .4643(6) .4613(5) .3574(5) 3.20(10) C13 C .5379(7) .5557(6) .3480(6) 4.5(2) C14 C .6569(7) .5426(7) .3365(7) 5.3(2) C15 C .7016(7) .4349(7) .3340(6) 4.9(2) C16 C .6285(6) .3409(6) .3446(6) 4.0(2) C21 C -.0550(6) .1068(6) .1520(5) 3.30(10) C22 C -.0090(6) .0016(6) .1590(5) 3.40(10) C23 C -.0786(7) -.0834(7) .1852(6) 4.8(2) C24 C -0.1932(8) -.0635(8) .2050(8) 6.2(2) C25 C -0.2388(8) .0435(9) .1975(7) 6.0(2) C26 C -0.1696(7) .1286(7) .1710(6) 4.6(2) C32 C .3308(6) .3393(5) .1122(5) 3.20(10) C33 C .4099(6) .3699(6) .0537(6) 4.2(2) C34 C .4784(7) .2834(7) .0079(6) 5.0(2) C35 C .4652(7) .1722(7) .0233(6) 4.9(2) C36 C .3833(6) .1480(6) .0829(5) 4.1(2) C42 C .1528(5) .1352(5) .4033(5) 2.90(10) C43 C .1058(6) .1188(6) .4894(5) 3.9(2) C44 C .0444(6) .2079(7) .5421(6) 4.4(2) C45 C .0322(7) .3082(7) .5066(6) 4.4(2) C46 C .0831(6) .3187(6) .4208(5) 3.7(2) O1a O .5216(4) .0669(4) .3501(5) 5.00(10) O2a O .4114(4) -.0727(4) .1978(4) 4.10(10) C1a O .4879(6) -.0397(5) .2896(6) 3.70(10) C2a O .5450(8) -0.1336(6) .3352(7) 6.2(2) O1b O .0933(5) -0.3572(4) -.0892(4) 5.30(10) O2b O -.0108(4) -0.4929(4) -0.2487(4) 4.20(10) C1b O .0693(6) -0.4609(6) -0.1593(6) 3.9(2) C2b O .1477(8) -0.5529(6) -0.1281(7) 6.3(2) Ow1 O .2450(7) .8757(7) .5039(6) 8.9(2) Ow2 O .2716(5) -0.2989(4) .1144(4) 5.00(10) Ow3 O .1569(6) .7123(6) .2886(5) 7.4(2) H1 H .3256 .4529 .4323 4.43 H1' H .3283 .5597 .3866 4.43 H2 H .1219 -0.1016 .1288 4.56 H2' H .1183 -0.0041 .0707 4.56 H3 H .2922 .5050 .1799 4.62 H3' H .1754 .4136 .1126 4.62 H4 H .2995 .0523 .3842 4.28 H4' H .1769 -0.0342 .3308 4.28 H13 H .5078 .6285 .3494 5.82 H14 H .7071 .6069 .3304 6.93 H15 H .7815 .4261 .3251 6.36 H16 H .6586 .2682 .3438 5.26 H23 H -0.0484 -0.1549 .1897 6.26 H24 H -0.2401 -0.1210 .2234 8.02 H25 H -0.3164 .0569 .2104 7.86 H26 H -0.1995 .2000 .1660 6.04 H33 H .4176 .4466 .0449 5.50 H34 H .5331 .3008 -0.0330 6.48 H35 H .5113 .1133 -0.0065 6.34 H36 H .3738 .0721 .0931 5.30 H43 H .1150 .0497 .5116 5.01 H44 H .0114 .2001 .6012 5.74 H45 H -0.0103 .3684 .5406 5.70 H46 H .0745 .3863 .3962 4.82 H1o H .4748 .1824 .3539 4.42 H2o H -0.0305 .2547 .1213 4.55 Hw2 H .2047 -0.3016 .0588 6.50 Hw3 H .2240 .6913 .2952 9.49 H2a H .5804 -0.1825 .2821 8.03 H2a' H .4836 -0.1815 .3496 8.03 H2a" H .6064 -0.0953 .4024 8.03 H2b H .2316 -0.5189 -0.1041 8.23 H2b' H .1243 -0.5746 -0.0698 8.23 H2b" H .1353 -0.6217 -0.1914 8.23 H1n H .1611 .4259 .2784 3.78 H2n H .2924 .0367 .2139 3.67 loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag N1 Cu N2 ? ? 177.1(2) yes N1 Cu N31 ? ? 83.3(2) yes N1 Cu N41 ? ? 95.7(2) yes N2 Cu N31 ? ? 97.8(2) yes N2 Cu N41 ? ? 83.0(2) yes N31 Cu N41 ? ? 176.0(2) yes Cu N1 C1 ? ? 112.3(4) no Cu N1 C3 ? ? 108.0(3) no C1 N1 C3 ? ? 114.2(5) no Cu N2 C2 ? ? 113.1(4) no Cu N2 C4 ? ? 108.0(3) no C2 N2 C4 ? ? 113.7(5) no Cu N31 C32 ? ? 111.9(4) no Cu N31 C36 ? ? 126.7(5) no C32 N31 C36 ? ? 119.8(6) no Cu N41 C42 ? ? 112.6(4) no Cu N41 C46 ? ? 127.6(5) no C42 N41 C46 ? ? 119.8(6) no N1 C1 C12 ? ? 111.8(5) no N2 C2 C22 ? ? 112.1(5) no N1 C3 C32 ? ? 109.4(6) no N2 C4 C42 ? ? 110.5(5) no O1 C11 C12 ? ? 117.6(6) no O1 C11 C16 ? ? 121.2(6) no C12 C11 C16 ? ? 121.2(6) no C1 C12 C11 ? ? 121.5(6) no C1 C12 C13 ? ? 119.1(6) no C11 C12 C13 ? ? 119.4(7) no C12 C13 C14 ? ? 119.8(7) no C13 C14 C15 ? ? 120.3(8) no C14 C15 C16 ? ? 120.0(8) no C11 C16 C15 ? ? 119.3(7) no O2 C21 C22 ? ? 117.5(6) no O2 C21 C26 ? ? 121.1(7) no C22 C21 C26 ? ? 121.4(7) no C2 C22 C21 ? ? 120.5(6) no C2 C22 C23 ? ? 120.0(6) no C21 C22 C23 ? ? 119.5(7) no C22 C23 C24 ? ? 120.1(8) no C23 C24 C25 ? ? 119.8(9) no C24 C25 C26 ? ? 120.2(8) no C21 C26 C25 ? ? 118.9(8) no N31 C32 C3 ? ? 115.7(6) no N31 C32 C33 ? ? 122.7(6) no C3 C32 C33 ? ? 121.7(6) no C32 C33 C34 ? ? 117.9(7) no C33 C34 C35 ? ? 119.3(8) no C34 C35 C36 ? ? 119.4(7) no N31 C36 C35 ? ? 120.9(7) no N41 C42 C4 ? ? 116.4(6) no N41 C42 C43 ? ? 122.6(6) no C4 C42 C43 ? ? 121.0(6) no C42 C43 C44 ? ? 117.8(7) no C43 C44 C45 ? ? 119.4(7) no C44 C45 C46 ? ? 119.3(7) no N41 C46 C45 ? ? 121.0(7) no O1a C1a O2a ? ? 124.6(7) no O1a C1a C2a ? ? 116.4(6) no O2a C1a C2a ? ? 119.0(5) no O1b C1b O2b ? ? 125.3(7) no O1b C1b C2b ? ? 115.9(6) no O2b C1b C2b ? ? 118.8(6) no O1 O1a Ow1 ? 2_666 106.2 no Ow2 O1b O2 ? 2_555 116.0 no O2a Ow2 O1b ? ? 118.3 no O2a Ow2 Ow3 ? ? 99.5 no O1b Ow2 Ow3 ? ? 109.7 no O2b Ow3 Ow1 2_545 1_545 121.6 no Ow2 Ow3 Ow1 ? 1_545 123.6 no Ow2 Ow3 O2b ? 2_545 110.6 no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag Cu N1 2.004(5) yes Cu N2 2.002(5) yes Cu N31 2.060(6) yes Cu N41 2.042(6) yes O1 C11 1.369(8) no O2 C21 1.365(9) no N1 C1 1.516(7) no N1 C3 1.495(9) no N2 C2 1.497(7) no N2 C4 1.499(9) no N31 C32 1.345(9) no N31 C36 1.355(9) no N41 C42 1.345(9) no N41 C46 1.358(9) no C1 C12 1.530(10) no C2 C22 1.510(10) no C3 C32 1.506(9) no C4 C42 1.502(9) no C11 C12 1.403(9) no C11 C16 1.400(10) no C12 C13 1.400(10) no C13 C14 1.410(10) no C14 C15 1.400(10) no C15 C16 1.400(10) no C21 C22 1.410(10) no C21 C26 1.410(10) no C22 C23 1.400(10) no C23 C24 1.410(10) no C24 C25 1.430(10) no C25 C26 1.400(10) no C32 C33 1.390(10) no C33 C34 1.410(10) no C34 C35 1.390(10) no C35 C36 1.400(10) no C42 C43 1.400(10) no C43 C44 1.410(10) no C44 C45 1.400(10) no C45 C46 1.400(10) no O1a C1a 1.255(7) no O2a C1a 1.242(7) no C1a C2a 1.530(10) no O1b C1b 1.266(7) no O2b C1b 1.240(7) no C1b C2b 1.550(10) no loop_ _geom_contact_atom_site_label_1 _geom_contact_atom_site_label_2 _geom_contact_distance _geom_contact_site_symmetry_2 _geom_contact_publ_flag Cu O1 2.494(6) ? yes Cu O2 2.449(6) ? yes O1 O1a 2.580 ? yes O1a Ow1 2.795 2_666 yes O1b O2 2.551 2_555 yes O1b Ow2 2.811 ? yes O2a Ow2 2.791 ? yes Ow2 Ow3 2.829 1_545 yes Ow3 O2b 2.822 2_555 yes Ow3 Ow1 2.806 ? yes