#------------------------------------------------------------------------------ #$Date: 2017-10-13 01:08:28 +0100 (Fri, 13 Oct 2017) $ #$Revision: 201955 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/51/2005188.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2005188 loop_ _publ_author_name 'Kubo, K.' 'Mori, A.' 'Kato, N.' 'Takeshita, H.' _publ_section_title ; Preferential Coordination of Mercury(II) to Oxygen over Sulfur Atoms in a Tropone-Attached Dithiocrown Ether ; _journal_issue 7 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1656 _journal_page_last 1658 _journal_paper_doi 10.1107/S0108270196002077 _journal_volume 52 _journal_year 1996 _chemical_formula_iupac 'C17 H24 O5 S2, [Hg Cl2]' _chemical_formula_moiety 'C17 H24 O5 S2, Hg Cl2' _chemical_formula_sum 'C17 H24 Cl2 Hg O5 S2' _chemical_formula_weight 644.00 _chemical_melting_point 481 _chemical_name_systematic ; 5,8,11,14-tetraoxa-2,17-dithiabicyclo[16.4.1]tricosa- 1(22),18,20-trien-23-one HgCl~2~ complex ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _cell_angle_alpha 90.00 _cell_angle_beta 95.84(2) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 18.749(4) _cell_length_b 8.025(2) _cell_length_c 15.115(3) _cell_measurement_reflns_used 25 _cell_measurement_temperature 296 _cell_measurement_theta_max 42 _cell_measurement_theta_min 22 _cell_volume 2262.4(9) _computing_cell_refinement 'CAD-4 Software' _computing_data_collection 'CAD-4 Software (Enraf-Nonius, 1989)' _computing_data_reduction 'MolEN (Fair, 1990)' _computing_molecular_graphics 'Xtal_GX (Hall & du Boulay, 1995)' _computing_publication_material SHELXL-93 _computing_structure_refinement 'SHELXL-93 (Sheldrick, 1993)' _computing_structure_solution 'SIR92 (Altomare et al., 1994)' _diffrn_ambient_temperature 296 _diffrn_measurement_device 'Enraf-Nonius FR590' _diffrn_measurement_method \w--2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.54184 _diffrn_reflns_av_R_equivalents 0.1053 _diffrn_reflns_av_sigmaI/netI 0.1059 _diffrn_reflns_limit_h_max 22 _diffrn_reflns_limit_h_min -22 _diffrn_reflns_limit_k_max 9 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 18 _diffrn_reflns_limit_l_min -18 _diffrn_reflns_number 8566 _diffrn_reflns_theta_max 70.05 _diffrn_reflns_theta_min 4.74 _diffrn_standards_decay_% 4.3 _diffrn_standards_interval_time 120 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 16.316 _exptl_absorpt_correction_T_max 0.129 _exptl_absorpt_correction_T_min 0.039 _exptl_absorpt_correction_type sphere _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 1.891 _exptl_crystal_density_meas ? _exptl_crystal_description sphere _exptl_crystal_F_000 1248 _exptl_crystal_size_rad 0.16 _refine_diff_density_max 2.441 _refine_diff_density_min -2.519 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_all 1.136 _refine_ls_goodness_of_fit_obs 1.119 _refine_ls_hydrogen_treatment noref _refine_ls_matrix_type full _refine_ls_number_parameters 244 _refine_ls_number_reflns 4289 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.137 _refine_ls_restrained_S_obs 1.119 _refine_ls_R_factor_all 0.0777 _refine_ls_R_factor_obs 0.0635 _refine_ls_shift/esd_max 0.001 _refine_ls_shift/esd_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.0768P)^2^+3.0658P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_all 0.1909 _refine_ls_wR_factor_obs 0.1600 _reflns_number_observed 3162 _reflns_number_total 4290 _reflns_observed_criterion >2\s(I) _cod_data_source_file ta1067.cif _cod_data_source_block 1 _cod_depositor_comments ; The following automatic conversions were performed: '_exptl_absorpt_correction_type' value 'Sphere' changed to 'sphere' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana The following automatic conversions were performed: '_exptl_crystal_density_meas' value 'not measured' was changed to '?' - the value is perceived as not measured. Automatic conversion script Id: cif_fix_values 3008 2015-01-20 13:52:24Z robertas The following automatic conversions were performed: '_refine_ls_weighting_scheme' value 'calc w = 1/[\s^2^(Fo^2^)+(0.0768P)^2^+3.0658P] where P=(Fo^2^+2Fc^2^)/3' was changed to 'calc'. New tag '_refine_ls_weighting_details' was created. The value of the new tag was set to 'w = 1/[\s^2^(Fo^2^)+(0.0768P)^2^+3.0658P] where P=(Fo^2^+2Fc^2^)/3'. Automatic conversion script Id: cif_fix_values 3143 2015-03-26 13:38:13Z robertas ; _cod_original_sg_symbol_Hall ' -P 2ybc' _cod_original_sg_symbol_H-M 'P 21/c' _cod_database_code 2005188 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Hg 0.0471(3) 0.0816(3) 0.0639(3) -0.00407(12) 0.0094(2) -0.00118(13) S1 0.0606(13) 0.134(2) 0.0716(13) 0.0046(15) 0.0120(11) -0.0160(15) S2 0.083(2) 0.104(2) 0.176(4) -0.031(2) 0.004(2) -0.018(2) O1 0.081(5) 0.116(6) 0.127(6) 0.011(4) 0.021(4) -0.031(5) O2 0.068(4) 0.087(4) 0.087(4) -0.015(3) 0.007(3) 0.019(3) O3 0.058(3) 0.093(4) 0.084(4) -0.013(3) 0.005(3) -0.009(3) O4 0.048(3) 0.103(4) 0.080(4) -0.015(3) 0.004(3) 0.000(3) O5 0.087(4) 0.120(5) 0.068(3) -0.020(4) 0.015(3) 0.008(3) Cl1 0.0622(12) 0.112(2) 0.0858(14) 0.0071(11) 0.0139(10) -0.0193(12) Cl2 0.0707(13) 0.110(2) 0.0826(13) 0.0127(12) 0.0254(11) 0.0044(12) C1 0.056(5) 0.120(9) 0.096(7) -0.001(5) -0.009(5) -0.031(6) C2 0.060(5) 0.098(6) 0.084(5) -0.005(5) -0.006(4) -0.029(5) C3 0.069(6) 0.113(8) 0.095(7) -0.013(6) 0.002(5) -0.019(6) C4 0.046(5) 0.164(11) 0.086(7) 0.024(7) -0.008(5) -0.017(8) C5 0.061(5) 0.143(11) 0.085(6) 0.032(6) 0.001(5) 0.011(7) C6 0.055(5) 0.127(9) 0.079(5) 0.017(5) -0.003(4) 0.009(6) C7 0.042(5) 0.137(11) 0.064(5) 0.006(4) -0.004(4) -0.014(4) C8 0.091(7) 0.119(9) 0.082(6) 0.022(7) 0.009(6) 0.025(6) C9 0.082(7) 0.137(10) 0.097(7) 0.005(7) 0.010(6) 0.040(7) C10 0.069(6) 0.089(6) 0.121(8) -0.017(5) 0.007(5) 0.033(6) C11 0.075(6) 0.070(5) 0.140(9) -0.031(5) -0.013(6) 0.009(6) C12 0.071(6) 0.104(7) 0.093(6) -0.009(5) -0.002(5) -0.019(6) C13 0.043(4) 0.125(7) 0.072(5) -0.003(5) 0.002(4) 0.001(6) C14 0.088(7) 0.110(7) 0.059(4) -0.004(6) -0.003(4) 0.014(5) C15 0.086(6) 0.129(8) 0.059(4) -0.032(6) 0.006(4) 0.010(5) C16 0.086(7) 0.121(9) 0.090(7) -0.037(6) 0.024(6) 0.019(6) C17 0.092(8) 0.083(7) 0.138(10) 0.002(6) -0.012(7) -0.010(7) loop_ _atom_site_label _atom_site_occupancy _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_type_symbol Hg 1 .70531(2) -.00460(4) .54937(2) .0639(2) Uani d . Hg S1 1 .81194(13) -.0606(5) .7307(2) .0884(7) Uani d . S S2 1 .9093(2) .4460(5) .5677(3) .1217(12) Uani d . S O1 1 .8473(4) .2597(11) .7086(6) .107(2) Uani d . O O2 1 .6972(3) -0.3091(8) .6450(4) .081(2) Uani d . O O3 1 .5920(3) -0.2216(8) .5059(4) .079(2) Uani d . O O4 1 .6231(4) .0363(9) .3840(5) .077(2) Uani d . O O5 1 .7229(4) .2895(10) .4470(4) .091(2) Uani d . O Cl1 1 .62837(12) .1454(3) .6277(2) .0864(7) Uani d . Cl Cl2 1 .78803(12) -0.1378(4) .4718(2) .0865(6) Uani d . Cl C1 1 .8910(5) .1697(16) .6725(7) .092(3) Uani d . C C2 1 .9354(5) .2503(13) .6089(6) .082(2) Uani d . C C3 1 .9999(6) .1878(15) .5856(7) .092(3) Uani d . C H3 1 1.0222(6) .2559(15) .5470(7) .111 Uiso calc R H C4 1 1.0364(6) .046(2) .6085(8) .100(4) Uani d . C H4 1 1.0830(6) .042(2) .5925(8) .120 Uiso calc R H C5 1 1.0144(5) -.0916(18) .6521(7) .097(3) Uani d . C H5 1 1.0474(5) -0.1779(18) .6618(7) .116 Uiso calc R H C6 1 .9476(5) -0.1151(16) .6832(6) .088(3) Uani d . C H6 1 .9388(5) -0.2228(16) .7021(6) .105 Uiso calc R H C7 1 .8939(6) -.0056(13) .6900(7) .081(3) Uani d . C C8 1 .8113(6) -0.2839(15) .7256(7) .098(3) Uani d . C H8A 1 .8304(6) -0.3205(15) .6716(7) .117 Uiso calc R H H8B 1 .8414(6) -0.3288(15) .7760(7) .117 Uiso calc R H C9 1 .7366(6) -0.3465(18) .7269(8) .105(4) Uani d . C H9A 1 .7372(6) -0.4660(18) .7365(8) .126 Uiso calc R H H9B 1 .7144(6) -0.2943(18) .7750(8) .126 Uiso calc R H C10 1 .6277(5) -0.3714(14) .6365(8) .093(3) Uani d . C H10A 1 .5966(5) -0.2980(14) .6662(8) .111 Uiso calc R H H10B 1 .6269(5) -0.4805(14) .6640(8) .111 Uiso calc R H C11 1 .6019(6) -0.3837(12) .5419(8) .097(3) Uani d . C H11A 1 .6366(6) -0.4439(12) .5106(8) .116 Uiso calc R H H11B 1 .5570(6) -0.4443(12) .5347(8) .116 Uiso calc R H C12 1 .5679(6) -0.2174(14) .4122(7) .090(3) Uani d . C H12A 1 .5238(6) -0.2809(14) .4011(7) .108 Uiso calc R H H12B 1 .6037(6) -0.2683(14) .3789(7) .108 Uiso calc R H C13 1 .5552(5) -.0425(15) .3820(7) .080(3) Uani d . C H13A 1 .5311(5) -.0407(15) .3221(7) .096 Uiso calc R H H13B 1 .5254(5) .0150(15) .4210(7) .096 Uiso calc R H C14 1 .6174(6) .2058(14) .3589(6) .087(3) Uani d . C H14A 1 .5913(6) .2668(14) .4007(6) .104 Uiso calc R H H14B 1 .5914(6) .2156(14) .3003(6) .104 Uiso calc R H C15 1 .6912(5) .2774(15) .3581(6) .092(3) Uani d . C H15A 1 .7200(5) .2060(15) .3240(6) .110 Uiso calc R H H15B 1 .6885(5) .3868(15) .3307(6) .110 Uiso calc R H C16 1 .7980(6) .3275(16) .4541(7) .098(3) Uani d . C H16A 1 .8092(6) .3946(16) .4040(7) .118 Uiso calc R H H16B 1 .8260(6) .2258(16) .4552(7) .118 Uiso calc R H C17 1 .8144(6) .4215(15) .5387(9) .106(3) Uani d . C H17A 1 .7939(6) .3629(15) .5863(9) .127 Uiso calc R H H17B 1 .7921(6) .5306(15) .5328(9) .127 Uiso calc R H loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0181 .0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0492 .0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S .3331 .5567 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl .3639 .7018 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Hg Hg -4.2923 7.6849 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag Cl1 Hg Cl2 175.71(9) yes C7 S1 C8 103.7(5) yes C2 S2 C17 102.9(5) yes C10 O2 C9 114.1(7) yes C11 O3 C12 114.5(8) yes C14 O4 C13 112.4(8) yes C15 O5 C16 113.6(7) yes O1 C1 C7 119.9(11) yes O1 C1 C2 117.6(11) yes C7 C1 C2 122.3(10) yes C3 C2 C1 124.6(10) yes C3 C2 S2 117.1(9) yes C1 C2 S2 118.0(7) yes C4 C3 C2 132.1(11) yes C3 C4 C5 129.1(10) yes C4 C5 C6 126.5(11) yes C7 C6 C5 129.8(12) yes C6 C7 C1 129.9(11) yes C6 C7 S1 123.1(9) yes C1 C7 S1 106.9(8) yes C9 C8 S1 109.8(9) yes O2 C9 C8 109.1(8) yes O2 C10 C11 109.1(8) yes O3 C11 C10 109.3(8) yes O3 C12 C13 110.4(8) yes O4 C13 C12 107.4(8) yes O4 C14 C15 109.1(9) yes O5 C15 C14 108.5(7) yes O5 C16 C17 106.7(9) yes C16 C17 S2 112.1(9) yes loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag Hg Cl1 2.297(2) yes Hg Cl2 2.301(2) yes S1 C7 1.769(11) yes S1 C8 1.794(13) yes S2 C2 1.742(12) yes S2 C17 1.800(12) yes O1 C1 1.258(12) yes O2 C10 1.389(11) yes O2 C9 1.409(12) yes O3 C11 1.415(11) yes O3 C12 1.441(11) yes O4 C14 1.414(12) yes O4 C13 1.418(11) yes O5 C15 1.416(11) yes O5 C16 1.433(11) yes C1 C7 1.431(15) yes C1 C2 1.482(15) yes C2 C3 1.387(13) yes C3 C4 1.35(2) yes C4 C5 1.37(2) yes C5 C6 1.395(14) yes C6 C7 1.348(14) yes C8 C9 1.49(2) yes C10 C11 1.465(15) yes C12 C13 1.49(2) yes C14 C15 1.499(13) yes C16 C17 1.49(2) yes loop_ _geom_contact_atom_site_label_1 _geom_contact_atom_site_label_2 _geom_contact_distance _geom_contact_publ_flag Hg S1 3.255(3) yes Hg S2 5.250(4) yes Hg O1 4.009(8) yes Hg O2 2.851(6) yes Hg O3 2.774(6) yes Hg O4 2.819(7) yes Hg O5 2.860(8) yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag O1 C1 C2 C3 158.3(10) ? C7 C1 C2 C3 -24.9(14) ? O1 C1 C2 S2 -15.7(12) ? C7 C1 C2 S2 161.0(8) ? C17 S2 C2 C3 139.8(8) ? C17 S2 C2 C1 -45.7(9) ? C1 C2 C3 C4 2.8(18) ? S2 C2 C3 C4 177.0(10) ? C2 C3 C4 C5 11.(2) ? C3 C4 C5 C6 -0.(2) ? C4 C5 C6 C7 -11.(2) ? C5 C6 C7 C1 -4.(2) ? C5 C6 C7 S1 179.4(9) ? O1 C1 C7 C6 -157.1(11) ? C2 C1 C7 C6 26.3(17) ? O1 C1 C7 S1 19.7(12) ? C2 C1 C7 S1 -157.0(7) ? C8 S1 C7 C6 -16.1(11) ? C8 S1 C7 C1 166.8(7) ? C7 S1 C8 C9 -160.1(8) yes C10 O2 C9 C8 176.1(10) yes S1 C8 C9 O2 71.2(12) yes C9 O2 C10 C11 -158.2(10) yes C12 O3 C11 C10 178.9(8) yes O2 C10 C11 O3 -69.1(11) yes C11 O3 C12 C13 176.9(8) yes C14 O4 C13 C12 -178.2(8) yes O3 C12 C13 O4 70.0(11) yes C13 O4 C14 C15 -177.0(8) yes C16 O5 C15 C14 169.3(10) yes O4 C14 C15 O5 -70.1(11) yes C15 O5 C16 C17 150.6(10) yes O5 C16 C17 S2 169.5(8) yes C2 S2 C17 C16 -76.7(10) yes loop_ _cod_related_entry_id _cod_related_entry_database _cod_related_entry_code 1 ChemSpider 21186818