#------------------------------------------------------------------------------ #$Date: 2015-01-23 12:30:19 +0000 (Fri, 23 Jan 2015) $ #$Revision: 130086 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/54/2005498.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2005498 loop_ _publ_author_name 'Baggio, R.' 'Perec, M.' 'Garland, M. T.' _publ_section_title ;Aqua(2,2'-bipyridyl-N,N')(thiodiacetato-O,O',S)zinc(II) Tetrahydrate ; _journal_issue 10 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 2457 _journal_page_last 2460 _journal_paper_doi 10.1107/S0108270196007329 _journal_volume 52 _journal_year 1996 _chemical_formula_iupac '[Zn (C4 H4 O4 S1) (C10 H8 N2) (H2 O)] , 4H2 O' _chemical_formula_moiety ; (Zn 2+), (C4 H4 O4 S1 2-), (C10 H8 N2), 5(H2 O) ; _chemical_formula_sum 'C14 H22 N2 O9 S Zn' _chemical_formula_weight 459.77 _chemical_name_systematic ; Aqua(2,2'-bipyridyl-N,N')(thiodiacetato-O,O',S)zinc(II) tetrahydrate ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _audit_creation_method SHELXL _cell_angle_alpha 102.01(1) _cell_angle_beta 103.27(1) _cell_angle_gamma 113.63(1) _cell_formula_units_Z 2 _cell_length_a 9.162(2) _cell_length_b 10.808(3) _cell_length_c 11.627(3) _cell_measurement_reflns_used 25 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 12.5 _cell_measurement_theta_min 7.5 _cell_volume 966.8(4) _computing_cell_refinement P3/P4/PC _computing_data_collection 'P3/P4/PC (Siemens, 1991)' _computing_data_reduction 'XDISK SHELXTL/PC (Sheldrick, 1991)' _computing_molecular_graphics 'XP SHELXTL/PC' _computing_publication_material ; CIFTAB (Sheldrick, 1993), PARST (Nardelli, 1983) and the Cambridge Structural Database (Allen, Kennard & Taylor, 1983) ; _computing_structure_refinement 'SHELXL93 (Sheldrick, 1993)' _computing_structure_solution 'XS SHELXTL/PC' _diffrn_ambient_temperature 293(2) _diffrn_measurement_device 'Siemens R3m' _diffrn_measurement_method \w/2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0083 _diffrn_reflns_av_sigmaI/netI 0.0157 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -1 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min -11 _diffrn_reflns_limit_l_max 12 _diffrn_reflns_limit_l_min -12 _diffrn_reflns_number 3101 _diffrn_reflns_theta_max 22.54 _diffrn_reflns_theta_min 1.91 _diffrn_standards_decay_% 0.0 _diffrn_standards_interval_count 98 _diffrn_standards_number 2 _exptl_absorpt_coefficient_mu 1.427 _exptl_absorpt_correction_T_max 0.940 _exptl_absorpt_correction_T_min 0.870 _exptl_absorpt_correction_type 'semi-empirical, \y-scan (XEMP SHELXTL/PC; Sheldrick, 1991)' _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.579 _exptl_crystal_density_meas ? _exptl_crystal_description polyhedra _exptl_crystal_F_000 476 _exptl_crystal_size_max 0.26 _exptl_crystal_size_mid 0.22 _exptl_crystal_size_min 0.18 _refine_diff_density_max 0.187 _refine_diff_density_min -0.261 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_all 1.036 _refine_ls_goodness_of_fit_obs 1.070 _refine_ls_matrix_type full _refine_ls_number_parameters 244 _refine_ls_number_reflns 2528 _refine_ls_number_restraints 15 _refine_ls_restrained_S_all 1.033 _refine_ls_restrained_S_obs 1.066 _refine_ls_R_factor_all 0.0242 _refine_ls_R_factor_obs 0.0221 _refine_ls_shift/esd_max 0.002 _refine_ls_shift/esd_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_scheme 'calc w = 1/[\s^2^(Fo^2^)+(0.0320P)^2^+0.5598P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_wR_factor_all 0.0583 _refine_ls_wR_factor_obs 0.0575 _reflns_number_observed 2332 _reflns_number_total 2528 _reflns_observed_criterion >2\s(I) _[local]_cod_data_source_file fg1160.cif _[local]_cod_data_source_block ZnDS _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. '_geom_bond_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (27 times). '_geom_angle_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (15 times). '_geom_angle_publ_flag' value 'N' changed to 'n' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (33 times). '_geom_torsion_publ_flag' value 'N' changed to 'n' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (78 times). Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana The following automatic conversions were performed: '_exptl_crystal_density_meas' value 'not_measured' was changed to '?' - the value is perceived as not measured. Automatic conversion script Id: cif_fix_values 3008 2015-01-20 13:52:24Z robertas ; _cod_database_code 2005498 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Zn1 0.0260(2) 0.0255(2) 0.0251(2) 0.01212(12) 0.01127(11) 0.00554(11) O1 0.0507(11) 0.0274(9) 0.0320(9) 0.0175(8) 0.0215(8) 0.0092(7) O2 0.0606(12) 0.0372(10) 0.0331(10) 0.0214(9) 0.0272(9) 0.0058(8) S3 0.0320(3) 0.0269(3) 0.0314(3) 0.0088(3) 0.0155(3) 0.0089(3) O4 0.0364(10) 0.0537(12) 0.0479(11) 0.0195(9) 0.0047(9) 0.0218(9) O5 0.0257(8) 0.0259(8) 0.0368(9) 0.0109(7) 0.0110(7) 0.0102(7) O1W 0.0509(11) 0.0260(9) 0.0326(9) 0.0059(8) 0.0127(8) 0.0089(7) O2W 0.0646(14) 0.0630(13) 0.0579(13) 0.0249(11) 0.0255(11) 0.0204(11) O3W 0.0646(13) 0.0475(11) 0.0494(12) 0.0201(10) 0.0137(10) 0.0202(9) O4W 0.0653(13) 0.0407(11) 0.0605(13) 0.0249(10) 0.0198(11) 0.0042(9) O5W 0.090(2) 0.0648(14) 0.0743(15) 0.0377(13) 0.0506(13) 0.0350(12) N1 0.0282(10) 0.0285(10) 0.0291(11) 0.0126(9) 0.0093(9) 0.0072(8) N2 0.0284(11) 0.0291(10) 0.0256(11) 0.0129(9) 0.0127(9) 0.0066(8) C1 0.0316(13) 0.0287(14) 0.0282(13) 0.0108(11) 0.0106(10) 0.0052(11) C2 0.087(2) 0.0295(14) 0.043(2) 0.0195(15) 0.038(2) 0.0080(12) C3 0.0402(15) 0.0366(14) 0.057(2) 0.0161(12) 0.0111(13) 0.0232(13) C4 0.0315(14) 0.0327(13) 0.0321(13) 0.0174(11) 0.0177(12) 0.0104(11) C5 0.040(2) 0.047(2) 0.0338(15) 0.0194(13) 0.0061(12) 0.0070(12) C6 0.038(2) 0.064(2) 0.047(2) 0.0155(15) -0.0041(14) 0.0133(15) C7 0.0296(15) 0.062(2) 0.068(2) 0.0202(14) 0.0144(15) 0.031(2) C8 0.0312(14) 0.045(2) 0.057(2) 0.0201(12) 0.0231(13) 0.0247(13) C9 0.0271(13) 0.0231(11) 0.0372(13) 0.0109(10) 0.0156(11) 0.0151(10) C10 0.0328(13) 0.0196(11) 0.0344(13) 0.0120(10) 0.0186(11) 0.0101(10) C11 0.043(2) 0.0378(14) 0.048(2) 0.0216(12) 0.0285(13) 0.0121(12) C12 0.064(2) 0.046(2) 0.037(2) 0.0237(15) 0.0295(14) 0.0055(12) C13 0.051(2) 0.052(2) 0.0276(14) 0.0180(14) 0.0128(12) 0.0027(12) C14 0.0357(14) 0.046(2) 0.0309(14) 0.0177(12) 0.0113(12) 0.0059(12) loop_ _atom_site_label _atom_site_occupancy _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_type_symbol Zn1 1 0.29789(3) 0.23965(3) 0.10434(2) 0.02557(10) Uani d . Zn O1 1 0.2981(2) 0.3342(2) 0.27638(14) 0.0358(4) Uani d . O O2 1 0.2968(2) 0.5060(2) 0.4170(2) 0.0432(4) Uani d . O S3 1 0.40952(7) 0.50488(6) 0.10746(5) 0.0312(2) Uani d . S O4 1 -0.0662(2) 0.2967(2) -0.1310(2) 0.0478(5) Uani d . O O5 1 0.0734(2) 0.2275(2) 0.00125(14) 0.0300(4) Uani d . O O1W 1 0.1873(2) 0.0478(2) 0.1357(2) 0.0414(4) Uani d D O H1WA 1 0.2090 0.0483 0.2110 0.054 Uiso d RD H H1WB 1 0.1077 -0.0340 0.0865 0.054 Uiso d RD H O2W 1 -0.0863(3) 0.2117(2) -0.3878(2) 0.0629(6) Uani d D O H2WA 1 -0.0665 0.2606 -0.3133 0.082 Uiso d RD H H2WB 1 0.0013 0.2475 -0.4078 0.082 Uiso d RD H O3W 1 -0.2425(3) -0.0664(2) -0.3846(2) 0.0566(5) Uani d D O H3WA 1 -0.3502 -0.1064 -0.4167 0.074 Uiso d RD H H3WB 1 -0.1995 0.0150 -0.3939 0.074 Uiso d RD H O4W 1 -0.4091(3) -0.8000(2) -0.4919(2) 0.0582(5) Uani d D O H4WA 1 -0.3834 -0.7121 -0.4780 0.076 Uiso d RD H H4WB 1 -0.3190 -0.8078 -0.4695 0.076 Uiso d RD H O5W 1 -0.1829(3) -0.2850(2) -0.5196(2) 0.0696(6) Uani d D O H5WA 1 -0.1917 -0.2152 -0.4784 0.091 Uiso d RD H H5WB 1 -0.2123 -0.3522 -0.4890 0.091 Uiso d RD H N1 1 0.5501(2) 0.2690(2) 0.1662(2) 0.0295(4) Uani d . N N2 1 0.3291(2) 0.1494(2) -0.0674(2) 0.0277(4) Uani d . N C1 1 0.3220(3) 0.4599(2) 0.3202(2) 0.0315(5) Uani d . C C2 1 0.3892(4) 0.5683(3) 0.2556(3) 0.0540(8) Uani d . C H2A 1 0.3153 0.6107 0.2430 0.070 Uiso d R H H2B 1 0.4990 0.6432 0.3121 0.070 Uiso d R H C3 1 0.2145(3) 0.4674(3) -0.0060(3) 0.0452(7) Uani d . C H3A 1 0.2379 0.4839 -0.0793 0.059 Uiso d R H H3B 1 0.1810 0.5365 0.0278 0.059 Uiso d R H C4 1 0.0621(3) 0.3194(2) -0.0482(2) 0.0301(5) Uani d . C C5 1 0.6554(3) 0.3308(3) 0.2860(2) 0.0431(6) Uani d . C H5A 1 0.6187 0.3702 0.3486 0.056 Uiso d R H C6 1 0.8142(4) 0.3395(3) 0.3227(3) 0.0574(8) Uani d . C H6A 1 0.8876 0.3859 0.4091 0.075 Uiso d R H C7 1 0.8660(3) 0.2813(3) 0.2331(3) 0.0528(7) Uani d . C H7A 1 0.9751 0.2840 0.2565 0.069 Uiso d R H C8 1 0.7586(3) 0.2185(3) 0.1094(3) 0.0406(6) Uani d . C H8A 1 0.7928 0.1784 0.0454 0.053 Uiso d R H C9 1 0.6016(3) 0.2144(2) 0.0785(2) 0.0278(5) Uani d . C C10 1 0.4805(3) 0.1531(2) -0.0530(2) 0.0275(5) Uani d . C C11 1 0.5229(3) 0.1080(3) -0.1557(2) 0.0398(6) Uani d . C H11A 1 0.6324 0.1127 -0.1437 0.052 Uiso d R H C12 1 0.4053(4) 0.0567(3) -0.2749(2) 0.0485(7) Uani d . C H12A 1 0.4322 0.0245 -0.3468 0.063 Uiso d R H C13 1 0.2504(4) 0.0516(3) -0.2896(2) 0.0477(7) Uani d . C H13A 1 0.1668 0.0158 -0.3717 0.062 Uiso d R H C14 1 0.2170(3) 0.0989(3) -0.1840(2) 0.0395(6) Uani d . C H14A 1 0.1083 0.0957 -0.1946 0.051 Uiso d R H loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Zn Zn 0.2839 1.4301 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag O1 Zn1 O1W 86.25(6) y O1 Zn1 O5 95.94(6) y O1W Zn1 O5 96.16(6) y O1 Zn1 N1 96.96(7) y O1W Zn1 N1 95.60(7) y O5 Zn1 N1 163.06(7) y O1 Zn1 N2 173.37(7) y O1W Zn1 N2 95.53(7) y O5 Zn1 N2 90.23(7) y N1 Zn1 N2 76.52(7) y O1 Zn1 S3 80.20(5) y O1W Zn1 S3 165.52(5) y O5 Zn1 S3 80.33(4) y N1 Zn1 S3 91.08(5) y N2 Zn1 S3 98.51(5) y C1 O1 Zn1 126.88(15) n C3 S3 C2 103.87(15) n C3 S3 Zn1 93.62(8) n C2 S3 Zn1 94.06(9) n C4 O5 Zn1 125.23(14) n C5 N1 C9 118.9(2) n C5 N1 Zn1 124.5(2) n C9 N1 Zn1 116.55(15) n C14 N2 C10 118.3(2) n C14 N2 Zn1 126.4(2) n C10 N2 Zn1 115.18(14) n O2 C1 O1 124.3(2) n O2 C1 C2 115.5(2) n O1 C1 C2 120.2(2) n C1 C2 S3 117.8(2) n C4 C3 S3 118.8(2) n O4 C4 O5 124.2(2) n O4 C4 C3 116.2(2) n O5 C4 C3 119.6(2) n N1 C5 C6 122.4(3) n C5 C6 C7 118.8(3) n C6 C7 C8 119.0(2) n C9 C8 C7 119.4(2) n N1 C9 C8 121.5(2) n N1 C9 C10 115.7(2) n C8 C9 C10 122.8(2) n N2 C10 C11 121.5(2) n N2 C10 C9 115.8(2) n C11 C10 C9 122.6(2) n C12 C11 C10 119.1(2) n C13 C12 C11 119.4(2) n C12 C13 C14 118.6(2) n N2 C14 C13 123.0(2) n loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag Zn1 O1 2.047(2) y Zn1 O1W 2.064(2) y Zn1 O5 2.067(2) y Zn1 N1 2.124(2) y Zn1 N2 2.167(2) y Zn1 S3 2.6180(10) y O1 C1 1.255(3) y O2 C1 1.244(3) y S3 C3 1.792(3) y S3 C2 1.797(3) y O4 C4 1.233(3) y O5 C4 1.273(3) y N1 C5 1.341(3) y N1 C9 1.343(3) y N2 C14 1.340(3) y N2 C10 1.341(3) y C1 C2 1.521(3) y C3 C4 1.522(3) y C5 C6 1.377(4) y C6 C7 1.379(4) y C7 C8 1.381(4) y C8 C9 1.380(3) y C9 C10 1.489(3) y C10 C11 1.391(3) y C11 C12 1.380(4) y C12 C13 1.367(4) y C13 C14 1.379(4) y loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag O1W Zn1 O1 C1 -165.8(2) n O5 Zn1 O1 C1 -70.0(2) n N1 Zn1 O1 C1 99.0(2) n N2 Zn1 O1 C1 88.4(6) n S3 Zn1 O1 C1 9.1(2) n O1 Zn1 S3 C3 -107.61(11) n O1W Zn1 S3 C3 -86.8(2) n O5 Zn1 S3 C3 -9.79(10) n N1 Zn1 S3 C3 155.52(11) n N2 Zn1 S3 C3 78.99(11) n O1 Zn1 S3 C2 -3.41(12) n O1W Zn1 S3 C2 17.4(2) n O5 Zn1 S3 C2 94.41(12) n N1 Zn1 S3 C2 -100.28(12) n N2 Zn1 S3 C2 -176.82(12) n O1 Zn1 O5 C4 94.9(2) n O1W Zn1 O5 C4 -178.3(2) n N1 Zn1 O5 C4 -44.5(3) n N2 Zn1 O5 C4 -82.7(2) n S3 Zn1 O5 C4 15.9(2) n O1 Zn1 N1 C5 1.1(2) n O1W Zn1 N1 C5 -85.8(2) n O5 Zn1 N1 C5 140.4(2) n N2 Zn1 N1 C5 179.8(2) n S3 Zn1 N1 C5 81.4(2) n O1 Zn1 N1 C9 177.46(15) n O1W Zn1 N1 C9 90.6(2) n O5 Zn1 N1 C9 -43.2(3) n N2 Zn1 N1 C9 -3.79(15) n S3 Zn1 N1 C9 -102.29(15) n O1 Zn1 N2 C14 -164.4(5) n O1W Zn1 N2 C14 90.3(2) n O5 Zn1 N2 C14 -5.9(2) n N1 Zn1 N2 C14 -175.2(2) n S3 Zn1 N2 C14 -86.1(2) n O1 Zn1 N2 C10 11.7(6) n O1W Zn1 N2 C10 -93.6(2) n O5 Zn1 N2 C10 170.2(2) n N1 Zn1 N2 C10 0.91(15) n S3 Zn1 N2 C10 89.98(15) n Zn1 O1 C1 O2 169.1(2) n Zn1 O1 C1 C2 -12.1(3) n O2 C1 C2 S3 -174.2(2) n O1 C1 C2 S3 6.8(4) n C3 S3 C2 C1 94.6(2) n Zn1 S3 C2 C1 -0.2(2) n C2 S3 C3 C4 -88.2(2) n Zn1 S3 C3 C4 6.9(2) n Zn1 O5 C4 O4 163.2(2) n Zn1 O5 C4 C3 -16.0(3) n S3 C3 C4 O4 -176.3(2) n S3 C3 C4 O5 2.9(3) n C9 N1 C5 C6 -0.4(4) n Zn1 N1 C5 C6 175.9(2) n N1 C5 C6 C7 -0.7(4) n C5 C6 C7 C8 1.2(4) n C6 C7 C8 C9 -0.6(4) n C5 N1 C9 C8 1.0(3) n Zn1 N1 C9 C8 -175.5(2) n C5 N1 C9 C10 -177.5(2) n Zn1 N1 C9 C10 5.9(2) n C7 C8 C9 N1 -0.5(4) n C7 C8 C9 C10 177.9(2) n C14 N2 C10 C11 0.9(3) n Zn1 N2 C10 C11 -175.6(2) n C14 N2 C10 C9 178.3(2) n Zn1 N2 C10 C9 1.8(2) n N1 C9 C10 N2 -5.1(3) n C8 C9 C10 N2 176.4(2) n N1 C9 C10 C11 172.3(2) n C8 C9 C10 C11 -6.3(3) n N2 C10 C11 C12 -0.7(3) n C9 C10 C11 C12 -177.9(2) n C10 C11 C12 C13 0.1(4) n C11 C12 C13 C14 0.3(4) n C10 N2 C14 C13 -0.4(4) n Zn1 N2 C14 C13 175.6(2) n C12 C13 C14 N2 -0.2(4) n