#------------------------------------------------------------------------------ #$Date: 2011-09-10 04:16:28 +0100 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2006094.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2006094 loop_ _publ_author_name 'Sood, G.' 'Schwalbe, C. H.' 'Fraser, W.' _publ_section_title ; 2,6-Diazido-9-(carboxymethyl)purine Methyl Ester ; _journal_issue 5 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 608 _journal_page_last 610 _journal_volume 53 _journal_year 1997 _chemical_formula_sum 'C8 H6 N10 O2' _chemical_formula_weight 274.23 _chemical_melting_point 400.0(10) _chemical_name_systematic ; N-9-(Carboxymethyl)-2,6-diazidopurine methyl ester ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _audit_creation_method SHELXL _cell_angle_alpha 90 _cell_angle_beta 102.907(10) _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 12.761(2) _cell_length_b 12.1276(13) _cell_length_c 7.9969(9) _cell_measurement_reflns_used 25 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 44.3 _cell_measurement_theta_min 22.2 _cell_volume 1206.3(3) _computing_cell_refinement 'CAD-4 Software' _computing_data_collection 'CAD-4 Software (Enraf-Nonius, 1989)' _computing_data_reduction ; DATREDXL (Brookhaven National Laboratory & University of Birmingham, 1986) ; _computing_molecular_graphics 'ORTEPII (Johnson, 1976)' _computing_publication_material SHELXL93 _computing_structure_refinement 'SHELXL93 (Sheldrick, 1993)' _computing_structure_solution 'MULTAN84 (Main, Germain & Woolfson, 1984)' _diffrn_ambient_temperature 293(2) _diffrn_measurement_device 'Enraf-Nonius CAD-4' _diffrn_measurement_method \w/2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.54178 _diffrn_reflns_av_R_equivalents 0.0580 _diffrn_reflns_av_sigmaI/netI 0.0602 _diffrn_reflns_limit_h_max 15 _diffrn_reflns_limit_h_min -15 _diffrn_reflns_limit_k_max 14 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 9 _diffrn_reflns_limit_l_min -9 _diffrn_reflns_number 4316 _diffrn_reflns_theta_max 67.7 _diffrn_reflns_theta_min 3.55 _diffrn_standards_decay_% 19 _diffrn_standards_interval_time 120 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 1.015 _exptl_absorpt_correction_type none _exptl_crystal_colour 'pale yellow--brown' _exptl_crystal_density_diffrn 1.510 _exptl_crystal_density_method none _exptl_crystal_description lath _exptl_crystal_F_000 560 _exptl_crystal_size_max 0.50 _exptl_crystal_size_mid 0.15 _exptl_crystal_size_min 0.05 _refine_diff_density_max 0.27 _refine_diff_density_min -0.24 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_all 1.036 _refine_ls_goodness_of_fit_obs 1.119 _refine_ls_hydrogen_treatment refall _refine_ls_matrix_type full _refine_ls_number_parameters 205 _refine_ls_number_reflns 2172 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.039 _refine_ls_restrained_S_obs 1.119 _refine_ls_R_factor_all 0.0916 _refine_ls_R_factor_obs 0.0629 _refine_ls_shift/esd_max 0.004 _refine_ls_shift/esd_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_scheme 'calc w = 1/[\s^2^(Fo^2^)+(0.0999P)^2^+0.0504P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_wR_factor_all 0.1961 _refine_ls_wR_factor_obs 0.1646 _reflns_number_observed 1384 _reflns_number_total 2173 _reflns_observed_criterion >2sigma(I) _[local]_cod_data_source_file bm1122.cif _[local]_cod_data_source_block gs42free _cod_depositor_comments ; The following automatic conversions were performed: '_chemical_melting_point' value '399-401 K' was changed to '400.0(10)' - the average value was taken and precision was estimated. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2006094 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 0.095(2) 0.0731(15) 0.0659(14) -0.0039(13) 0.0219(14) 0.0007(11) C2 0.100(2) 0.0631(15) 0.0549(15) -0.0020(15) 0.025(2) 0.0011(11) N3 0.105(2) 0.0550(11) 0.0539(12) -0.0005(12) 0.0191(13) -0.0007(9) C4 0.095(2) 0.0615(14) 0.0533(14) -0.0028(14) 0.027(2) -0.0020(11) C5 0.099(2) 0.0611(15) 0.072(2) -0.0053(15) 0.035(2) -0.0019(13) C6 0.094(2) 0.077(2) 0.069(2) -0.016(2) 0.027(2) -0.0064(14) N7 0.111(2) 0.0610(14) 0.089(2) -0.0083(14) 0.033(2) -0.0061(12) C8 0.114(3) 0.055(2) 0.083(2) 0.006(2) 0.037(2) 0.0015(14) N9 0.096(2) 0.0564(11) 0.0581(12) 0.0017(12) 0.0241(13) 0.0004(9) C10 0.104(2) 0.0629(15) 0.0500(13) 0.006(2) 0.0178(15) 0.0008(11) C11 0.103(2) 0.0521(13) 0.0518(15) 0.0043(14) 0.0166(15) 0.0012(10) O12 0.127(2) 0.0912(14) 0.0529(11) -0.0210(13) 0.0261(12) -0.0093(9) O13 0.107(2) 0.0982(15) 0.0619(12) -0.0047(13) 0.0107(13) 0.0081(10) C14 0.107(3) 0.104(3) 0.106(3) -0.009(2) 0.021(3) 0.011(2) N21 0.112(2) 0.0704(14) 0.0652(15) 0.0126(15) 0.015(2) 0.0072(11) N22 0.127(3) 0.075(2) 0.101(2) 0.014(2) 0.019(2) 0.006(2) N23 0.160(4) 0.111(3) 0.184(5) 0.040(3) 0.000(4) 0.009(3) N61 0.097(2) 0.095(2) 0.109(2) -0.015(2) 0.010(2) -0.001(2) N62 0.113(3) 0.125(3) 0.111(3) -0.031(3) 0.004(2) -0.011(2) N63 0.145(4) 0.186(5) 0.152(4) -0.025(4) -0.027(4) 0.006(3) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_occupancy _atom_site_type_symbol N1 0.2173(2) 0.4368(2) 0.0400(3) 0.0773(7) Uani d 1 N C2 0.2953(3) 0.4986(2) 0.1369(3) 0.0716(8) Uani d 1 C N3 0.3854(2) 0.4657(2) 0.2385(3) 0.0711(7) Uani d 1 N C4 0.3934(3) 0.3562(2) 0.2419(3) 0.0684(8) Uani d 1 C C5 0.3212(3) 0.2814(2) 0.1512(4) 0.0750(8) Uani d 1 C C6 0.2297(3) 0.3284(3) 0.0457(4) 0.0785(9) Uani d 1 C N7 0.3556(3) 0.1746(2) 0.1886(4) 0.0856(8) Uani d 1 N C8 0.4468(4) 0.1869(2) 0.2993(5) 0.0815(10) Uani d 1 C H81 0.489(3) 0.136(3) 0.344(4) 0.084(10) Uiso d 1 H N9 0.4750(2) 0.2946(2) 0.3370(3) 0.0692(7) Uani d 1 N C10 0.5693(3) 0.3367(2) 0.4522(3) 0.0723(8) Uani d 1 C H101 0.608(3) 0.276(3) 0.530(4) 0.095(10) Uiso d 1 H H102 0.551(2) 0.396(2) 0.515(4) 0.066(7) Uiso d 1 H C11 0.6500(3) 0.3806(2) 0.3602(3) 0.0690(8) Uani d 1 C O12 0.6391(2) 0.3854(2) 0.2071(2) 0.0896(7) Uani d 1 O O13 0.7366(2) 0.4130(2) 0.4727(3) 0.0901(7) Uani d 1 O C14 0.8224(4) 0.4658(4) 0.4117(6) 0.1060(13) Uani d 1 C H141 0.864(3) 0.416(4) 0.368(5) 0.109(14) Uiso d 1 H H142 0.879(4) 0.506(4) 0.546(7) 0.147(15) Uiso d 1 H H143 0.803(4) 0.530(4) 0.321(7) 0.153(17) Uiso d 1 H N21 0.2811(3) 0.6133(2) 0.1319(3) 0.0834(8) Uani d 1 N N22 0.1975(3) 0.6439(3) 0.0376(5) 0.1023(10) Uani d 1 N N23 0.1247(4) 0.6822(4) -0.0488(8) 0.158(2) Uani d 1 N N61 0.1538(3) 0.2599(3) -0.0553(5) 0.1024(10) Uani d 1 N N62 0.0804(4) 0.3138(3) -0.1502(6) 0.1197(12) Uani d 1 N N63 0.0109(4) 0.3546(5) -0.2393(8) 0.171(2) Uani d 1 N loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0311 0.0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0492 0.0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C6 N1 C2 117.8(3) ? N3 C2 N1 128.4(3) yes N3 C2 N21 114.1(3) yes N1 C2 N21 117.5(3) yes C2 N3 C4 111.6(3) ? N3 C4 N9 127.0(3) ? N3 C4 C5 127.3(3) ? N9 C4 C5 105.7(2) ? C4 C5 N7 111.1(3) ? C4 C5 C6 114.8(3) ? N7 C5 C6 134.1(3) ? N1 C6 N61 120.8(3) yes N1 C6 C5 120.1(3) yes N61 C6 C5 119.1(3) yes C8 N7 C5 103.5(3) ? N7 C8 N9 114.1(3) ? C4 N9 C8 105.6(3) ? C4 N9 C10 126.0(2) ? C8 N9 C10 128.4(3) ? N9 C10 C11 112.5(2) ? O12 C11 O13 124.6(3) ? O12 C11 C10 125.7(3) ? O13 C11 C10 109.6(2) ? C11 O13 C14 119.0(3) ? N22 N21 C2 114.2(3) ? N23 N22 N21 173.2(4) ? N62 N61 C6 111.8(3) ? N63 N62 N61 174.7(5) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag N1 C6 1.324(4) yes N1 C2 1.345(4) yes C2 N3 1.313(4) yes C2 N21 1.402(4) yes N3 C4 1.331(3) yes C4 N9 1.367(4) yes C4 C5 1.379(4) yes C5 N7 1.379(4) yes C5 C6 1.400(5) yes C6 N61 1.389(4) yes N7 C8 1.304(5) yes C8 N9 1.371(4) yes N9 C10 1.436(4) yes C10 C11 1.490(4) yes C11 O12 1.203(3) yes C11 O13 1.319(4) yes O13 C14 1.444(5) yes N21 N22 1.219(5) yes N22 N23 1.127(5) yes N61 N62 1.250(5) yes N62 N63 1.121(6) yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C6 N1 C2 N3 0.7(4) ? C6 N1 C2 N21 -179.2(2) ? N1 C2 N3 C4 -1.6(4) ? N21 C2 N3 C4 178.3(2) ? C2 N3 C4 N9 -178.3(2) ? C2 N3 C4 C5 1.5(3) ? N3 C4 C5 N7 -179.3(2) ? N9 C4 C5 N7 0.5(3) ? N3 C4 C5 C6 -0.5(4) ? N9 C4 C5 C6 179.3(2) ? C2 N1 C6 N61 -178.0(2) ? C2 N1 C6 C5 0.5(4) ? C4 C5 C6 N1 -0.6(4) ? N7 C5 C6 N1 177.9(3) ? C4 C5 C6 N61 177.9(2) ? N7 C5 C6 N61 -3.6(5) ? C4 C5 N7 C8 -0.2(3) ? C6 C5 N7 C8 -178.7(3) ? C5 N7 C8 N9 -0.2(3) ? N3 C4 N9 C8 179.2(2) ? C5 C4 N9 C8 -0.5(2) ? N3 C4 N9 C10 -0.4(4) ? C5 C4 N9 C10 179.8(2) ? N7 C8 N9 C4 0.5(3) ? N7 C8 N9 C10 -179.9(2) ? C4 N9 C10 C11 -76.8(3) yes C8 N9 C10 C11 103.6(3) yes N9 C10 C11 O12 2.5(4) ? N9 C10 C11 O13 -177.0(2) ? O12 C11 O13 C14 4.9(5) ? C10 C11 O13 C14 -175.7(3) ? N3 C2 N21 N22 180.0(3) ? N1 C2 N21 N22 -0.1(4) yes C2 N21 N22 N23 -163.(4) ? N1 C6 N61 N62 2.8(5) yes C5 C6 N61 N62 -175.7(3) ? C6 N61 N62 N63 -176.(6) ?