#------------------------------------------------------------------------------ #$Date: 2017-01-12 12:40:29 +0000 (Thu, 12 Jan 2017) $ #$Revision: 190438 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/61/2006199.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2006199 loop_ _publ_author_name 'Engelhardt, Udo' 'Rosefid, Mehdi' _publ_section_title ; A Tricyclic Phosphorus(V)--Hydrazine System with Twist Conformation of the Central Heterocycle ; _journal_issue 6 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 773 _journal_page_last 775 _journal_paper_doi 10.1107/S0108270196014898 _journal_volume 53 _journal_year 1997 _chemical_formula_sum 'C15 H21 N4 O2 P S' _chemical_formula_weight 352.14 _chemical_melting_point 385.15 _chemical_name_systematic ; 9-oxo-2-phenoxy-1,3,8,10-tetraaza-2\l^5^- phosphatricyclo[8.4.0.0^3,8^]tetradecane-2-sulfide ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _cell_angle_alpha 90.0 _cell_angle_beta 91.10(2) _cell_angle_gamma 90.0 _cell_formula_units_Z 4 _cell_length_a 8.002(5) _cell_length_b 12.286(2) _cell_length_c 17.380(4) _cell_measurement_reflns_used 23 _cell_measurement_temperature 293 _cell_measurement_theta_max 14 _cell_measurement_theta_min 7 _cell_volume 1708.4(12) _computing_cell_refinement CAD-4 _computing_data_collection 'CAD-4 (Enraf-Nonius, 1994)' _computing_data_reduction CAD-4 _computing_molecular_graphics 'ORTEPII (Johnson, 1976)' _computing_structure_refinement 'XTAL3.0 (Hall & Stewart, 1990)' _computing_structure_solution 'MULTAN77 (Main, Lessinger, Woolfson, Germain & Declercq, 1977)' _diffrn_ambient_temperature 293 _diffrn_measurement_device 'ENRAF-NONIUS CAD4' _diffrn_measurement_method '\w scan' _diffrn_radiation_monochromator graphite _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71069 _diffrn_reflns_av_R_equivalents 0.020 _diffrn_reflns_av_sigmaI/netI 0.027 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -9 _diffrn_reflns_limit_k_max 14 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 20 _diffrn_reflns_limit_l_min 0 _diffrn_reflns_number 3241 _diffrn_reflns_theta_max 25 _diffrn_reflns_theta_min 2.5 _diffrn_standards_decay_% 3% _diffrn_standards_interval_count 100 _diffrn_standards_number 2 _exptl_absorpt_coefficient_mu 0.29 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.371 _exptl_crystal_density_meas ? _exptl_crystal_description needle _exptl_crystal_F_000 744 _exptl_crystal_size_max 0.55 _exptl_crystal_size_mid 0.25 _exptl_crystal_size_min 0.15 _refine_diff_density_max 0.34 _refine_diff_density_min -0.29 _refine_ls_extinction_coef 0.29(2) _refine_ls_extinction_method 'Larson (1967)' _refine_ls_goodness_of_fit_all 2.48 _refine_ls_goodness_of_fit_obs 2.80 _refine_ls_hydrogen_treatment 'H atoms refined isotropically' _refine_ls_matrix_type 'full matrix' _refine_ls_number_constraints 0 _refine_ls_number_parameters 293 _refine_ls_number_reflns 2760 _refine_ls_number_restraints 0 _refine_ls_R_factor_all 0.067 _refine_ls_R_factor_obs .048 _refine_ls_shift/esd_max 0.017 _refine_ls_shift/esd_mean 0.0029 _refine_ls_structure_factor_coef F _refine_ls_weighting_details 'w = 1/\s^2^(Fo)' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_all 0.030 _refine_ls_wR_factor_obs .029 _reflns_number_observed 2378 _reflns_number_total 3008 _reflns_observed_criterion I>2\s(I) _cod_data_source_file cf1146.cif _cod_data_source_block 1 _cod_depositor_comments ; Adding proper _atom_site_type_symbol data item values instead of the placeholder ones ('?'). Antanas Vaitkus, 2017-01-12 The following automatic conversions were performed: '_diffrn_ambient_temperature' value '293 K' was changed to '293' - the value should be numeric and without a unit designator. '_chemical_melting_point' value '112\%C' was changed to '385.15' - it was converted from degrees Celsius(C) to Kelvins(K). Automatic conversion script Id: cif_fix_values 1646 2011-03-28 12:23:43Z adriana The following automatic conversions were performed: '_diffrn_ambient_temperature' value '293 K' was changed to '293' - the value should be numeric and without a unit designator. '_chemical_melting_point' value '112\%C' was changed to '385.15' - it was converted from degrees Celsius(C) to Kelvins(K). '_geom_torsion_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (6 times). Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana The following automatic conversions were performed: '_exptl_crystal_density_meas' value 'not measured' was changed to '?' - the value is perceived as not measured. Automatic conversion script Id: cif_fix_values 3008 2015-01-20 13:52:24Z robertas The following automatic conversions were performed: '_refine_ls_weighting_scheme' value 'w = 1/\s^2^(Fo)' was changed to 'calc'. New tag '_refine_ls_weighting_details' was created. The value of the new tag was set to 'w = 1/\s^2^(Fo)'. Automatic conversion script Id: cif_fix_values 3143 2015-03-26 13:38:13Z robertas ; _cod_original_cell_volume 1708.0(10) _cod_original_sg_symbol_H-M 'P 21/n' _cod_database_code 2006199 loop_ _symmetry_equiv_pos_as_xyz x,y,z -x+1/2,y+1/2,-z+1/2 -x,-y,-z x+1/2,-y+1/2,z+1/2 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 _atom_site_aniso_type_symbol S .0595(5) .0467(4) .0723(5) -.0100(4) .0100(4) .0091(4) U P2 .0497(4) .0325(3) .0531(4) -.0044(3) .0015(3) -.0005(3) U O1 .0530(10) .0460(10) .0750(10) -.0072(9) .0040(10) -.0168(9) U O2 .0700(10) .0570(10) .0910(10) -.0300(10) .0010(10) .0060(10) U N1 .0480(10) .0390(10) .0460(10) -.0070(10) .0000(10) .0039(9) U N3 .0510(10) .0320(10) .0590(10) -.0030(10) -.0080(10) .0020(10) U N8 .068(2) .0340(10) .0660(10) -.0120(10) -.0250(10) .0050(10) U N10 .0550(10) .0460(10) .0500(10) -.0120(10) .0050(10) .0050(10) U C1 .051(2) .042(2) .059(2) -.0050(10) .0030(10) -.0100(10) U C2 .074(2) .046(2) .073(2) .001(2) .004(2) -.004(2) U C3 .096(3) .044(2) .115(3) -.018(2) .028(3) -.024(2) U C8 .100(3) .104(3) .084(3) -.035(3) .011(2) -.046(3) U C10 .166(4) .102(3) .069(3) -.023(3) -.021(3) -.011(2) U C15 .141(4) .059(2) .068(2) -.009(2) -.015(2) .000(2) U C4 .070(2) .041(2) .067(2) .008(2) -.012(2) .0000(10) U C5 .077(3) .055(2) .069(2) .017(2) -.023(2) .000(2) U C6 .055(2) .065(2) .060(2) .005(2) -.013(2) -.010(2) U C7 .065(2) .042(2) .069(2) -.002(2) -.019(2) -.005(2) U C9 .051(2) .0390(10) .065(2) -.0030(10) -.0010(10) .0000(10) U C11 .079(2) .061(2) .046(2) -.018(2) .005(2) .004(2) U C12 .097(3) .048(2) .054(2) -.010(2) -.012(2) .014(2) U C13 .071(2) .058(2) .068(2) .005(2) -.008(2) .014(2) U C14 .056(2) .049(2) .055(2) -.005(2) .002(2) .005(2) U loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_calc_attached_atom _atom_site_refinement_flags _atom_site_disorder_group _atom_site_type_symbol S .12237(9) .59818(5) .24318(4) .0595(5) Ueq ? ? ? ? S P2 .31535(9) .64953(5) .19106(4) .0451(4) Ueq ? ? ? ? P O1 .4067(2) .56070(10) .14000(10) .0580(10) Ueq ? ? ? ? O O2 .6413(2) .91770(10) .14430(10) .0730(10) Ueq ? ? ? ? O N1 .2815(3) .7554(2) .13470(10) .0440(10) Ueq ? ? ? ? N N3 .4800(3) .69130(10) .24330(10) .0470(10) Ueq ? ? ? ? N N8 .5317(3) .8005(2) .23200(10) .056(2) Ueq ? ? ? ? N N10 .4346(3) .7983(2) .10670(10) .0500(10) Ueq ? ? ? ? N C1 .3258(3) .4863(2) .0905(2) .051(2) Ueq ? ? ? ? C C2 .3157(4) .3804(2) .1129(2) .064(2) Ueq ? ? ? ? C C3 .2502(5) .3046(3) .0609(3) .085(3) Ueq ? ? ? ? C C8 .1995(5) .3355(4) -.0104(3) .096(3) Ueq ? ? ? ? C C10 .2066(6) .4434(4) -.0305(2) .112(3) Ueq ? ? ? ? C C15 .2730(5) .5185(3) .0200(2) .089(3) Ueq ? ? ? ? C C4 .6198(4) .6200(2) .2653(2) .059(2) Ueq ? ? ? ? C C5 .7062(5) .6634(3) .3368(2) .067(2) Ueq ? ? ? ? C C6 .7622(4) .7794(3) .3248(2) .060(2) Ueq ? ? ? ? C C7 .6164(4) .8483(2) .2986(2) .059(2) Ueq ? ? ? ? C C9 .5451(3) .8446(2) .1600(2) .058(2) Ueq ? ? ? ? C C11 .4075(4) .8547(3) .0328(2) .062(2) Ueq ? ? ? ? C C12 .2788(5) .9448(2) .0403(2) .066(3) Ueq ? ? ? ? C C13 .1178(4) .9000(3) .0728(2) .065(2) Ueq ? ? ? ? C C14 .1533(4) .8397(2) .1477(2) .053(2) Ueq ? ? ? ? C H2 .347(4) .362(2) .1600(10) .080(10) Uiso ? ? ? ? H H3 .249(4) .240(2) .072(2) .090(10) Uiso ? ? ? ? H H8 .156(4) .283(3) -.047(2) .130(10) Uiso ? ? ? ? H H10 .167(4) .465(3) -.088(2) .15(2) Uiso ? ? ? ? H H15 .266(4) .593(3) .009(2) .130(10) Uiso ? ? ? ? H H41 .572(3) .545(2) .2730(10) .077(9) Uiso ? ? ? ? H H42 .694(3) .617(2) .2190(10) .070(9) Uiso ? ? ? ? H H51 .623(3) .664(2) .3790(10) .068(9) Uiso ? ? ? ? H H52 .791(3) .616(2) .3480(10) .071(9) Uiso ? ? ? ? H H61 .810(3) .807(2) .3750(10) .058(8) Uiso ? ? ? ? H H62 .847(3) .778(2) .2860(10) .080(10) Uiso ? ? ? ? H H71 .534(3) .854(2) .3420(10) .090(10) Uiso ? ? ? ? H H72 .648(3) .918(2) .2810(10) .080(10) Uiso ? ? ? ? H H111 .364(3) .796(2) -.0030(10) .052(7) Uiso ? ? ? ? H H112 .524(3) .881(2) .0210(10) .063(8) Uiso ? ? ? ? H H121 .251(3) .982(2) -.0110(10) .058(7) Uiso ? ? ? ? H H122 .333(3) .998(2) .0760(10) .061(8) Uiso ? ? ? ? H H131 .069(3) .845(2) .0320(10) .080(10) Uiso ? ? ? ? H H132 .034(3) .956(2) .0810(10) .090(10) Uiso ? ? ? ? H H141 .058(3) .805(2) .1630(10) .055(8) Uiso ? ? ? ? H H142 .195(3) .890(2) .1900(10) .051(7) Uiso ? ? ? ? H loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C carbon 0.0033 0.0016 'International Tables for Crystallography (1992). Vol. C' N nitrogen 0.0061 0.0033 'International Tables for Crystallography (1992). Vol. C' O oxygen 0.0106 0.0060 'International Tables for Crystallography (1992). Vol. C' P phosphorus 0.1023 0.0942 'International Tables for Crystallography (1992). Vol. C' S sulfur 0.1246 0.1234 'International Tables for Crystallography (1992). Vol. C' loop_ _diffrn_standard_refln_index_h _diffrn_standard_refln_index_k _diffrn_standard_refln_index_l 2 3 6 2 5 3 loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag S P2 O1 114.94(7) yes S P2 N1 114.67(8) yes S P2 N3 118.67(8) yes O1 P2 N1 106.320(10) yes O1 P2 N3 98.60(10) yes N1 P2 N3 101.60(10) yes P2 O1 C1 125.2(2) yes P2 N1 N10 111.2(2) yes P2 N1 C14 124.7(2) yes N10 N1 C14 113.3(2) yes P2 N3 N8 116.6(2) yes P2 N3 C4 123.3(2) yes N8 N3 C4 112.0(2) yes N3 N8 C7 113.9(2) yes N3 N8 C9 122.0(2) yes C7 N8 C9 121.6(2) yes N1 N10 C9 117.6(2) yes N1 N10 C11 111.0(2) yes C9 N10 C11 118.0(2) yes O2 C9 N8 124.0(2) yes O2 C9 N10 123.3(2) yes N8 C9 N10 112.7(2) yes O1 C1 C2 118.5(2) no O1 C1 C15 119.9(3) no C2 C1 C15 121.4(3) no C1 C2 C3 118.5(3) no C2 C3 C8 120.7(3) no C3 C8 C10 119.4(4) no C8 C10 C15 120.3(4) no C1 C15 C10 119.6(3) no N3 C4 C5 109.8(2) no C4 C5 C6 110.7(3) no C5 C6 C7 110.0(3) no C6 C7 N8 111.1(2) no N10 C11 C12 110.9(2) no C11 C12 C13 110.5(3) no C12 C13 C14 110.5(3) no C13 C14 N1 109.2(2) no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag S P2 1.9130(10) yes P2 O1 1.594(2) yes P2 N1 1.647(2) yes P2 N3 1.663(2) yes N1 N10 1.429(3) yes N1 C14 1.479(4) no N3 N8 1.420(3) yes N3 C4 1.468(4) no O1 C1 1.404(3) no O2 C9 1.218(3) yes N8 C7 1.453(4) no N8 C9 1.370(3) yes N10 C11 1.471(4) no N10 C9 1.390(3) yes C1 C2 1.361(4) no C1 C15 1.348(4) no C2 C3 1.392(5) no C3 C8 1.351(6) no C8 C10 1.373(6) no C10 C15 1.372(6) no C C(phenyl)mean 1.370(10) no C4 C5 1.507(5) no C5 C6 1.510(5) no C6 C7 1.504(5) no C11 C12 1.520(5) no C12 C13 1.520(5) no C13 C14 1.519(4) no C C(hexahydropyridazine)mean 1.513(7) no C2 H2 .88(3) no C3 H3 .82(3) no C8 H8 .97(3) no C10 H10 1.08(3) no C15 H15 .94(3) no C4 H41 1.00(2) no C4 H42 1.01(2) no C5 H51 1.00(2) no C5 H52 .91(3) no C6 H61 1.01(2) no C6 H62 .96(3) no C7 H71 1.02(3) no C7 H72 .95(3) no C11 H111 1.01(2) no C11 H112 1.01(2) no C12 H121 1.03(2) no C12 H122 .99(2) no C13 H131 1.06(2) no C13 H132 .98(3) no C14 H141 .91(2) no C14 H142 1.01(2) no loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag N3 P2 N1 N10 42.4(2) y P2 N1 N10 C9 -66.0(2) y N1 N10 C9 N8 28.4(3) y N10 C9 N8 N3 29.1(3) y C9 N8 N3 P2 -44.9(3) y N8 N3 P2 N1 5.6(2) y