#------------------------------------------------------------------------------ #$Date: 2013-12-28 13:58:47 +0000 (Sat, 28 Dec 2013) $ #$Revision: 91933 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/62/2006261.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2006261 loop_ _publ_author_name 'Murugesan, S. ' 'Thomas Muthiah, P.' _publ_contact_author ; Dr P. Thomas Muthiah Department of Chemistry Bharathidasan University, Tiruchirapalli India 620 024 ; _publ_section_title ; Hydrogen-Bonding Patterns in Trimethoprim Nitrate, an Antifolate Drug ; _journal_issue 6 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 763 _journal_page_last 764 _journal_volume 53 _journal_year 1997 _chemical_formula_moiety 'C14 H19 N4 O3,NO3' _chemical_formula_sum 'C14 H19 N5 O6' _chemical_formula_weight 353.34 _chemical_name_common 'Trimethoprim nitrate' _chemical_name_systematic ; [2,4,-diamino-5-(3,4,5-trimethoxybenzyl)pyrimidine] nitrate. ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _audit_creation_method SHELXL _cell_angle_alpha 93.565(10) _cell_angle_beta 104.462(9) _cell_angle_gamma 101.452(8) _cell_formula_units_Z 2 _cell_length_a 8.4247(7) _cell_length_b 9.4820(10) _cell_length_c 10.6340(10) _cell_measurement_reflns_used 25 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 20 _cell_measurement_theta_min 10 _cell_volume 800.57(14) _computing_cell_refinement MolEN _computing_data_collection 'MolEN (Fair, 1990)' _computing_data_reduction MolEN _computing_molecular_graphics 'ORTEP (Johnson, 1965)' _computing_publication_material 'SHELXL93, PARST (Nardelli, 1983)' _computing_structure_refinement 'SHELXL93 (Sheldrick, 1993)' _computing_structure_solution 'SHELXS86 (Sheldrick, 1990)' _diffrn_ambient_temperature 293(2) _diffrn_measurement_device 'Enraf-Nonius CAD-4' _diffrn_measurement_method \w--2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type 'Mo K\a' _diffrn_radiation_wavelength 0.70930 _diffrn_reflns_av_R_equivalents 0.0131 _diffrn_reflns_av_sigmaI/netI 0.0206 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_l_max 13 _diffrn_reflns_limit_l_min -13 _diffrn_reflns_number 3732 _diffrn_reflns_theta_max 26.91 _diffrn_reflns_theta_min 1.99 _diffrn_standards_decay_% negligible _diffrn_standards_interval_time 60 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.116 _exptl_absorpt_correction_type none _exptl_crystal_colour 'Light yellow ' _exptl_crystal_density_diffrn 1.466 _exptl_crystal_density_meas 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 372 _exptl_crystal_size_max 1.0 _exptl_crystal_size_mid 0.6 _exptl_crystal_size_min 0.4 _refine_diff_density_max .218 _refine_diff_density_min -.274 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_all 1.134 _refine_ls_goodness_of_fit_obs 1.217 _refine_ls_matrix_type full _refine_ls_number_parameters 302 _refine_ls_number_reflns 3487 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.134 _refine_ls_restrained_S_obs 1.217 _refine_ls_R_factor_all 0.0671 _refine_ls_R_factor_obs .0503 _refine_ls_shift/esd_max 0.034 _refine_ls_shift/esd_mean 0.005 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_scheme 'calc w = 1/[\s^2^(Fo^2^)+(0.0507P)^2^+0.3918P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_wR_factor_all 0.1297 _refine_ls_wR_factor_obs .1219 _reflns_number_observed 2740 _reflns_number_total 3487 _reflns_observed_criterion >2sigma(I) _[local]_cod_data_source_file vj1045.cif _[local]_cod_data_source_block tmpn93 _cod_depositor_comments ; The following automatic conversions were performed: '_geom_bond_publ_flag' value 'Yes' changed to 'yes' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (12 times). '_geom_bond_publ_flag' value 'No' changed to 'no' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (13 times). Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_geom_bond_publ_flag' value 'Yes' changed to 'yes' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (12 times). '_geom_bond_publ_flag' value 'No' changed to 'no' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (13 times). '_geom_angle_publ_flag' value 'Yes' changed to 'yes' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (13 times). '_geom_angle_publ_flag' value 'No' changed to 'no' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (20 times). Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 800.57(13) _cod_database_code 2006261 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 .0396(9) .0268(8) .0333(9) .0091(7) .0068(7) .0104(7) C2 .0340(10) .0303(9) .0253(9) .0103(8) .0073(7) .0069(7) N2 .0432(11) .0350(10) .0426(10) .0097(9) -.0029(8) .0140(8) N3 .0335(8) .0273(8) .0294(8) .0075(6) .0021(7) .0060(6) C4 .0310(9) .0298(9) .0259(9) .0085(7) .0062(7) .0055(7) N4 .0427(11) .0298(9) .0442(11) .0066(8) -.0051(9) .0131(8) C5 .0303(9) .0325(10) .0230(8) .0067(8) .0069(7) .0052(7) C6 .0344(10) .0321(10) .0295(9) .0041(8) .0077(8) .0044(8) C7 .0293(10) .0423(11) .0271(9) .0068(9) .0044(8) .0068(8) C1' .0289(9) .0311(9) .0257(9) .0027(7) .0013(7) .0050(7) C2' .0323(10) .0316(10) .0304(9) .0070(8) .0037(8) .0041(8) C3' .0308(9) .0278(9) .0308(9) .0045(8) -.0019(8) .0079(7) O1 .0414(8) .0440(8) .0370(8) .0166(7) .0003(6) .0141(6) C8 .0472(14) .0513(15) .0535(15) .0237(12) .0046(12) .0150(12) C4' .0364(10) .0317(10) .0236(9) .0025(8) .0005(8) .0056(7) O2 .0489(9) .0517(9) .0236(7) .0025(7) .0027(6) .0079(6) C9 .066(2) .0525(15) .0389(13) .0050(13) .0201(12) .0142(11) C5' .0339(10) .0344(10) .0305(10) .0072(8) .0064(8) .0036(8) O3 .0490(9) .0602(10) .0332(8) .0262(8) .0115(7) .0097(7) C10 .0418(13) .0569(15) .0459(13) .0209(11) .0090(11) .0071(11) C6' .0313(10) .0360(10) .0285(9) .0094(8) .0028(8) .0073(8) N5 .0444(10) .0409(10) .0473(10) .0179(8) .0204(9) .0204(8) O4 .0855(14) .0491(11) .0532(11) .0096(10) -.0071(10) .0153(8) O5 .0483(9) .0486(9) .0480(9) .0149(7) .0082(7) .0192(7) O6 .0667(12) .0548(11) .099(2) .0212(9) .0213(11) .0510(11) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_group _atom_site_type_symbol N1 .7748(2) .5518(2) .9992(2) .0333(4) Uani d . 1 . N H1 .783(3) .464(3) 1.020(2) .049(7) Uiso d . 1 . H C2 .9010(2) .6676(2) 1.0559(2) .0294(4) Uani d . 1 . C N2 1.0266(3) .6451(2) 1.1510(2) .0423(5) Uani d . 1 . N H2A 1.022(3) .550(3) 1.169(2) .047(7) Uiso d . 1 . H H2B 1.110(4) .716(3) 1.182(3) .057(8) Uiso d . 1 . H N3 .9021(2) .7991(2) 1.02006(15) .0310(4) Uani d . 1 . N C4 .7712(2) .8169(2) .9243(2) .0288(4) Uani d . 1 . C N4 .7758(3) .9489(2) .8899(2) .0418(5) Uani d . 1 . N H4A .701(4) .969(3) .827(3) .056(8) Uiso d . 1 . H H4B .864(4) 1.021(3) .932(3) .063(8) Uiso d . 1 . H C5 .6314(2) .6995(2) .8625(2) .0286(4) Uani d . 1 . C C6 .6409(3) .5695(2) .9034(2) .0326(4) Uani d . 1 . C H6 .559(3) .485(3) .869(2) .043(6) Uiso d . 1 . H C7 .4779(3) .7221(2) .7658(2) .0335(4) Uani d . 1 . C H7A .442(3) .808(3) .803(2) .044(6) Uiso d . 1 . H H7B .392(3) .637(3) .759(2) .041(6) Uiso d . 1 . H C1' .4891(2) .7443(2) .6279(2) .0302(4) Uani d . 1 . C C2' .3715(2) .8124(2) .5537(2) .0323(4) Uani d . 1 . C H2' .293(3) .852(2) .591(2) .037(6) Uiso d . 1 . H C3' .3646(2) .8224(2) .4230(2) .0317(4) Uani d . 1 . C O1 .2551(2) .8891(2) .34192(14) .0412(4) Uani d . 1 . O C8 .1367(3) .9443(3) .3944(3) .0501(6) Uani d . 1 . C H8A .063(4) .864(3) .419(3) .068(9) Uiso d . 1 . H H8B .188(4) 1.014(3) .467(3) .069(9) Uiso d . 1 . H H8C .072(4) .989(3) .324(3) .075(9) Uiso d . 1 . H C4' .4702(2) .7625(2) .3649(2) .0326(4) Uani d . 1 . C O2 .4471(2) .7623(2) .23174(13) .0438(4) Uani d . 1 . O C9 .5760(4) .8535(3) .1911(3) .0520(6) Uani d . 1 . C H9A .594(5) .948(4) .240(4) .106(13) Uiso d . 1 . H H9B .533(4) .859(4) .096(4) .091(11) Uiso d . 1 . H H9C .676(5) .825(4) .209(4) .110(14) Uiso d . 1 . H C5' .5895(2) .6971(2) .4409(2) .0334(4) Uani d . 1 . C O3 .6886(2) .6424(2) .37599(14) .0451(4) Uani d . 1 . O C10 .8229(3) .5865(3) .4523(3) .0472(6) Uani d . 1 . C H10A .776(4) .506(3) .498(3) .072(9) Uiso d . 1 . H H10B .896(3) .663(3) .524(3) .058(8) Uiso d . 1 . H H10C .889(4) .554(3) .389(3) .071(9) Uiso d . 1 . H C6' .5990(2) .6897(2) .5732(2) .0325(4) Uani d . 1 . C H6' .681(3) .644(3) .621(2) .041(6) Uiso d . 1 . H N5 .8865(2) .2584(2) 1.1718(2) .0408(4) Uani d . 1 . N O4 1.0008(3) .3639(2) 1.2295(2) .0677(6) Uani d . 1 . O O5 .7841(2) .2730(2) 1.0681(2) .0480(4) Uani d . 1 . O O6 .8756(2) .1419(2) 1.2161(2) .0708(6) Uani d . 1 . O loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_1 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag N1 C2 . . 1.354(3) yes N1 C6 . . 1.364(3) yes C2 N3 . . 1.326(2) yes C2 N2 . . 1.329(3) yes N3 C4 . . 1.347(2) yes C4 N4 . . 1.322(2) yes C4 C5 . . 1.435(3) yes C5 C6 . . 1.343(3) yes C5 C7 . . 1.500(3) yes C7 C1' . . 1.518(3) yes C1' C6' . . 1.373(3) no C1' C2' . . 1.396(3) no C2' C3' . . 1.386(3) no C3' O1 . . 1.377(2) yes C3' C4' . . 1.389(3) no O1 C8 . . 1.425(3) yes C4' O2 . . 1.380(2) no C4' C5' . . 1.397(3) no O2 C9 . . 1.421(3) no C5' O3 . . 1.363(2) no C5' C6' . . 1.396(3) no O3 C10 . . 1.433(3) no N5 O6 . . 1.224(2) no N5 O4 . . 1.245(3) no N5 O5 . . 1.253(2) no loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C2 N1 C6 119.8(2) yes N3 C2 N2 120.3(2) yes N3 C2 N1 122.4(2) yes N2 C2 N1 117.3(2) yes C2 N3 C4 118.1(2) yes N4 C4 N3 116.9(2) yes N4 C4 C5 120.9(2) yes N3 C4 C5 122.2(2) yes C6 C5 C4 115.9(2) yes C6 C5 C7 121.7(2) yes C4 C5 C7 122.2(2) no C5 C6 N1 121.5(2) no C5 C7 C1' 117.9(2) yes C6' C1' C2' 120.6(2) no C6' C1' C7 122.4(2) no C2' C1' C7 116.8(2) no C3' C2' C1' 119.3(2) no O1 C3' C2' 123.8(2) yes O1 C3' C4' 115.4(2) no C2' C3' C4' 120.8(2) no C3' O1 C8 117.7(2) yes O2 C4' C3' 118.5(2) no O2 C4' C5' 122.0(2) no C3' C4' C5' 119.3(2) no C4' O2 C9 116.4(2) no O3 C5' C6' 124.8(2) no O3 C5' C4' 115.3(2) no C6' C5' C4' 119.9(2) no C5' O3 C10 117.2(2) no C1' C6' C5' 120.0(2) no O6 N5 O4 120.0(2) no O6 N5 O5 120.7(2) no O4 N5 O5 119.3(2) no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N1 H1 O5 . 0.89(3) 1.91(3) 2.798(2) 175(3) yes N2 H2A O4 . 0.93(3) 1.91(3) 2.827(3) 171(2) yes N2 H2B O1 1_656 0.85(3) 2.21(3) 2.979(2) 150(3) yes _journal_paper_doi 10.1107/S0108270196015636