#------------------------------------------------------------------------------ #$Date: 2011-09-10 04:16:28 +0100 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2006266.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2006266 loop_ _publ_author_name 'Low, J. N.' 'Ferguson, G.' 'L\'opez, R.' 'Arranz, P.' 'Cobo, J.' 'Melguizo, M.' 'Nogueras, M.' 'S\'anchez, A.' _publ_section_title ; N-(6-Amino-3,4-dihydro-3-methyl-5-nitroso-4-oxopyrimidin-2-yl)glycine--Water (1/2) ; _journal_issue 7 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 890 _journal_page_last 892 _journal_volume 53 _journal_year 1997 _chemical_formula_moiety 'C7 H9 N5 O4 , 2H2 O' _chemical_formula_sum 'C7 H13 N5 O6' _chemical_formula_weight 263.22 _chemical_name_systematic ; N-(6-Amino-3,4-dihydro-3-methyl-5-nitroso-4-oxopyrimidin-2-yl)glycine Dihydrate ; _space_group_IT_number 61 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall '-P 2ac 2ab' _symmetry_space_group_name_H-M 'P b c a' _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 8 _cell_length_a 9.2739(13) _cell_length_b 16.682(2) _cell_length_c 14.690(2) _cell_measurement_reflns_used 25 _cell_measurement_temperature 294(2) _cell_measurement_theta_max 14.55 _cell_measurement_theta_min 8.55 _cell_volume 2272.6(5) _computing_cell_refinement 'SET4 and CELDIM (Enraf-Nonius, 1992)' _computing_data_collection 'CAD-4 Software (Enraf-Nonius, 1992)' _computing_data_reduction 'DATRD2 in NRCVAX94 (Gabe, Le Page, Charland, Lee & White, 1989)' _computing_molecular_graphics 'NRCVAX94, PLATON and PLUTON (Spek 1995b)' _computing_publication_material 'NRCVAX94, SHELXL93 and WordPerfect macro PREPCIF' _computing_structure_refinement 'NRCVAX94 and SHELXL93 (Sheldrick, 1993)' _computing_structure_solution 'SOLVER in NRCVAX94' _diffrn_ambient_temperature 294(2) _diffrn_measurement_device 'Enraf-Nonius CAD-4' _diffrn_measurement_method \q/2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'X-ray tube' _diffrn_radiation_type 'Molybdenum K\a' _diffrn_radiation_wavelength 0.7107 _diffrn_reflns_av_R_equivalents 0.0000 _diffrn_reflns_av_sigmaI/netI 0.0730 _diffrn_reflns_limit_h_max 11 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 21 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 18 _diffrn_reflns_limit_l_min 0 _diffrn_reflns_number 2485 _diffrn_reflns_theta_max 27.0 _diffrn_reflns_theta_min 2.4 _diffrn_standards_decay_% 'no decay, variation 0.4' _diffrn_standards_interval_time 120 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.134 _exptl_absorpt_correction_T_max 1.0 _exptl_absorpt_correction_T_min 1.0 _exptl_absorpt_correction_type none _exptl_crystal_colour orange _exptl_crystal_density_diffrn 1.539 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 1104 _exptl_crystal_size_max 0.41 _exptl_crystal_size_mid 0.41 _exptl_crystal_size_min 0.03 _refine_diff_density_max 0.246 _refine_diff_density_min -0.272 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_all 0.889 _refine_ls_goodness_of_fit_obs 1.149 _refine_ls_hydrogen_treatment 'H atoms riding: see text' _refine_ls_matrix_type full _refine_ls_number_parameters 177 _refine_ls_number_reflns 2485 _refine_ls_number_restraints 4 _refine_ls_restrained_S_all 0.888 _refine_ls_restrained_S_obs 1.147 _refine_ls_R_factor_all 0.1210 _refine_ls_R_factor_obs 0.0482 _refine_ls_shift/esd_max -0.001 _refine_ls_shift/esd_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_scheme 'calc w = 1/[\s^2^(Fo^2^)+(0.0614P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_wR_factor_all 0.1205 _refine_ls_wR_factor_obs 0.1043 _reflns_number_observed 1207 _reflns_number_total 2485 _reflns_observed_criterion >2sigma(I) _[local]_cod_data_source_file ab1473.cif _[local]_cod_data_source_block 1 _cod_database_code 2006266 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, z' 'x, -y+1/2, z+1/2' '-x+1/2, -y, z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, -z' '-x, y-1/2, -z-1/2' 'x-1/2, y, -z-1/2' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 0.0369(12) 0.0388(12) 0.0281(10) 0.0027(10) 0.0003(9) -0.0004(9) C2 0.0337(14) 0.0282(12) 0.0321(13) -0.0036(11) 0.0026(12) -0.0038(10) N2 0.0358(12) 0.0410(12) 0.0292(11) 0.0036(10) -0.0014(10) -0.0039(9) C21 0.0291(14) 0.0370(13) 0.0441(14) 0.0027(12) 0.0047(12) -0.0060(12) C22 0.0347(14) 0.0348(13) 0.0338(13) 0.0077(12) -0.0044(12) 0.0041(11) O21 0.0658(14) 0.0501(11) 0.0362(10) -0.0091(10) 0.0054(10) -0.0076(9) O22 0.0558(12) 0.0481(11) 0.0489(11) -0.0156(10) 0.0109(10) -0.0033(9) N3 0.0392(13) 0.0402(12) 0.0266(10) 0.0047(11) -0.0014(9) -0.0011(9) C3 0.061(2) 0.058(2) 0.0288(14) 0.014(2) -0.0016(14) 0.0004(12) C4 0.040(2) 0.0357(13) 0.0364(14) 0.0013(13) -0.0002(12) -0.0025(11) O4 0.0638(13) 0.0652(12) 0.0356(9) 0.0259(11) 0.0081(10) -0.0063(10) C5 0.038(2) 0.0301(12) 0.0339(12) 0.0006(12) 0.0023(11) 0.0003(11) N5 0.0446(14) 0.0341(11) 0.0410(12) -0.0021(11) -0.0057(11) 0.0033(10) O5 0.0500(12) 0.0409(11) 0.0453(11) 0.0058(9) -0.0061(9) 0.0028(8) C6 0.0364(14) 0.0310(13) 0.0321(13) -0.0051(12) -0.0018(12) 0.0005(10) N6 0.0502(15) 0.0471(13) 0.0313(11) 0.0103(12) -0.0039(11) 0.0016(10) O1 0.0584(14) 0.0652(14) 0.0474(11) -0.0192(12) 0.0039(12) -0.0021(10) O2 0.0501(13) 0.0575(13) 0.0503(12) 0.0119(11) 0.0020(11) 0.0036(10) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol N1 0.9546(2) -0.11277(12) 0.51650(12) 0.0346(5) Uani d . 1 N C2 0.9880(3) -0.13069(14) 0.6017(2) 0.0313(6) Uani d . 1 C N2 1.0945(2) -0.18165(11) 0.61569(13) 0.0353(5) Uani d . 1 N C21 1.1719(3) -0.21788(14) 0.5407(2) 0.0368(6) Uani d . 1 C C22 1.1001(3) -0.28867(15) 0.4975(2) 0.0345(6) Uani d . 1 C O21 1.1342(2) -0.30980(11) 0.42189(12) 0.0507(5) Uani d . 1 O O22 1.0072(2) -0.32455(11) 0.54881(13) 0.0509(5) Uani d . 1 O N3 0.9211(2) -0.09949(12) 0.67737(12) 0.0353(5) Uani d . 1 N C3 0.9608(3) -0.1252(2) 0.7696(2) 0.0492(8) Uani d . 1 C C4 0.8156(3) -0.04152(15) 0.6694(2) 0.0375(6) Uani d . 1 C O4 0.7610(2) -0.01311(11) 0.73692(11) 0.0549(5) Uani d . 1 O C5 0.7777(3) -0.01920(13) 0.5757(2) 0.0341(6) Uani d . 1 C N5 0.6769(2) 0.03624(12) 0.57162(14) 0.0399(5) Uani d . 1 N O5 0.6343(2) 0.05902(10) 0.49165(12) 0.0454(5) Uani d . 1 O C6 0.8500(3) -0.05956(13) 0.5017(2) 0.0331(6) Uani d . 1 C N6 0.8153(2) -0.04434(12) 0.41694(13) 0.0429(6) Uani d . 1 N O1 0.6891(2) -0.22143(13) 0.23511(14) 0.0570(6) Uani d D 1 O O2 0.9298(2) -0.12379(12) 0.25567(14) 0.0526(5) Uani d D 1 O H2 1.1184 -0.1936 0.6706 0.042 Uiso calc R 1 H H21A 1.2661 -0.2344 0.5625 0.044 Uiso calc R 1 H H21B 1.1871 -0.1774 0.4943 0.044 Uiso calc R 1 H H22 0.9709 -0.3822 0.5200 0.061 Uiso d . 1 H H3A 0.9029 -0.0970 0.8133 0.074 Uiso calc R 1 H H3B 1.0608 -0.1136 0.7802 0.074 Uiso calc R 1 H H3C 0.9447 -0.1818 0.7756 0.074 Uiso calc R 1 H H6A 0.8595 -0.0684 0.3733 0.051 Uiso calc R 1 H H6B 0.7483 -0.0103 0.4049 0.051 Uiso calc R 1 H H1A 0.7661 -0.1973 0.2374 0.068 Uiso d D 1 H H1B 0.6906 -0.2448 0.1860 0.068 Uiso d D 1 H H2A 0.9139 -0.0904 0.2160 0.063 Uiso d D 1 H H2B 1.0074 -0.1473 0.2539 0.063 Uiso d D 1 H loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _diffrn_standard_refln_index_h _diffrn_standard_refln_index_k _diffrn_standard_refln_index_l 0 -8 2 0 -8 3 -4 5 0 loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C2 N1 C6 118.4(2) no N2 C2 N1 118.0(2) no N2 C2 N3 117.1(2) no N1 C2 N3 125.0(2) no C2 N2 C21 121.5(2) no N2 C21 C22 115.6(2) no O21 C22 O22 125.2(2) no O21 C22 C21 120.3(2) no O22 C22 C21 114.5(2) no C2 N3 C4 121.1(2) no C2 N3 C3 121.5(2) no C4 N3 C3 117.4(2) no O4 C4 N3 120.1(2) no O4 C4 C5 124.7(2) no N3 C4 C5 115.2(2) no N5 C5 C6 128.6(2) no N5 C5 C4 113.0(2) no C6 C5 C4 118.5(2) no O5 N5 C5 117.6(2) no N6 C6 N1 117.6(2) no N6 C6 C5 120.7(2) no N1 C6 C5 121.7(2) no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag N1 C2 1.323(3) y N1 C6 1.332(3) y C2 N2 1.319(3) y C2 N3 1.376(3) y N2 C21 1.447(3) y C21 C22 1.497(3) y C22 O21 1.207(3) y C22 O22 1.292(3) y N3 C3 1.468(3) y N3 C4 1.381(3) y C4 O4 1.210(3) y C4 C5 1.469(3) y C5 N5 1.316(3) y C5 C6 1.444(3) y N5 O5 1.296(2) y C6 N6 1.311(3) y loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag O1 H1A O2 . 0.82 1.97 2.779(3) 169 yes O1 H1B O21 8_556 0.82 1.99 2.784(3) 163 yes N2 H2 O1 6_656 0.86 2.09 2.862(3) 149 yes O2 H2A O4 4_654 0.82 2.39 2.901(3) 121 yes O2 H2A N5 4_654 0.82 2.46 3.228(3) 158 yes O2 H2B O1 8_656 0.82 2.10 2.908(3) 170 yes N6 H6A O2 . 0.86 2.07 2.914(3) 169 yes N6 H6B O5 . 0.86 2.02 2.645(3) 129 yes N6 H6B O4 4_654 0.86 2.50 2.900(3) 109 yes O22 H22 O5 2_645 1.10 1.44 2.491(3) 155 yes O22 H22 N5 2_645 1.10 2.08 2.902(3) 129 yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C6 N1 C2 N2 -178.0(2) n C6 N1 C2 N3 1.2(4) n N1 C2 N2 C21 -0.7(3) n N3 C2 N2 C21 -180.0(2) n C2 N2 C21 C22 -81.3(3) yes N2 C21 C22 O21 160.5(2) n N2 C21 C22 O22 -22.1(3) n N2 C2 N3 C4 175.4(2) n N1 C2 N3 C4 -3.9(4) n N2 C2 N3 C3 -3.4(3) n N1 C2 N3 C3 177.3(2) n C2 N3 C4 O4 -177.8(2) n C3 N3 C4 O4 1.0(4) n C2 N3 C4 C5 2.4(4) n C3 N3 C4 C5 -178.7(2) n O4 C4 C5 N5 0.3(4) n N3 C4 C5 N5 -179.9(2) n O4 C4 C5 C6 -178.7(3) n N3 C4 C5 C6 1.1(3) n C6 C5 N5 O5 0.0(4) yes C4 C5 N5 O5 -178.8(2) n C2 N1 C6 N6 -178.0(2) n C2 N1 C6 C5 2.6(3) n N5 C5 C6 N6 -2.0(4) n C4 C5 C6 N6 176.9(2) n N5 C5 C6 N1 177.5(2) n C4 C5 C6 N1 -3.7(3) n