#------------------------------------------------------------------------------ #$Date: 2017-10-13 01:08:28 +0100 (Fri, 13 Oct 2017) $ #$Revision: 201955 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/63/2006339.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2006339 loop_ _publ_author_name 'Marilyn M. Olmstead' 'Ming Hu' 'Mark J. Kurth' 'John M. Krochta' 'You-Lo Hsieh' _publ_contact_author ; Dr. Marilyn M. Olmstead Department of Chemistry University of California Davis, CA 95616 USA ; _publ_section_title ; Lactosylurea Dihydrate ; _journal_issue 7 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 915 _journal_page_last 916 _journal_paper_doi 10.1107/S0108270197002849 _journal_volume 53 _journal_year 1997 _chemical_formula_iupac 'C13 H24 N2 O11 , 2H2 O' _chemical_formula_moiety 'C13 H24 N2 O11,2H2 O' _chemical_formula_sum 'C13 H28 N2 O13' _chemical_formula_weight 420.37 _chemical_name_common lactosylurea _chemical_name_systematic ; 4-O-beta-D-galactopyranosyl-D-glucopyranosyl urea ; _space_group_IT_number 1 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall 'P 1' _symmetry_space_group_name_H-M 'P 1' _audit_creation_method SHELXL _cell_angle_alpha 87.836(7) _cell_angle_beta 86.108(6) _cell_angle_gamma 77.183(6) _cell_formula_units_Z 1 _cell_length_a 4.7378(3) _cell_length_b 7.5284(6) _cell_length_c 13.1036(11) _cell_measurement_reflns_used 35 _cell_measurement_temperature 130(2) _cell_measurement_theta_max 30 _cell_measurement_theta_min 10 _cell_volume 454.56(6) _computing_cell_refinement 'P3/P4-PC Software' _computing_data_collection 'P3/P4-PC Software (Siemens, 1991a)' _computing_data_reduction 'XDISK (Siemens, 1991b)' _computing_molecular_graphics 'XP (Siemens, 1994)' _computing_publication_material SHELXL93 _computing_structure_refinement 'SHELXL93 (Sheldrick, 1993)' _computing_structure_solution 'SHELXS86 (Sheldrick, 1990)' _diffrn_ambient_temperature 130(2) _diffrn_measurement_device 'Syntex P2~1~' _diffrn_measurement_method 2\q-\w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'normal-focus sealed tube' _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.54178 _diffrn_reflns_av_R_equivalents 0.0000 _diffrn_reflns_av_sigmaI/netI 0.0267 _diffrn_reflns_limit_h_max 5 _diffrn_reflns_limit_h_min -1 _diffrn_reflns_limit_k_max 8 _diffrn_reflns_limit_k_min -7 _diffrn_reflns_limit_l_max 14 _diffrn_reflns_limit_l_min -14 _diffrn_reflns_number 1590 _diffrn_reflns_theta_max 56.99 _diffrn_reflns_theta_min 3.38 _diffrn_standards_decay_% 0.0 _diffrn_standards_interval_count 198 _diffrn_standards_number 2 _exptl_absorpt_coefficient_mu 1.207 _exptl_absorpt_correction_T_max 0.89 _exptl_absorpt_correction_T_min 0.83 _exptl_absorpt_correction_type 'XABS2 (Please provide reference, 19??)' _exptl_crystal_colour Colorless _exptl_crystal_density_diffrn 1.536 _exptl_crystal_density_meas ? _exptl_crystal_description parallelepipeds _exptl_crystal_F_000 224 _exptl_crystal_size_max 0.38 _exptl_crystal_size_mid 0.15 _exptl_crystal_size_min 0.12 _refine_diff_density_max 0.190 _refine_diff_density_min -0.193 _refine_ls_abs_structure_details 'Flack (1983)' _refine_ls_abs_structure_Flack 0.0(2) _refine_ls_extinction_coef 0.010(3) _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_all 1.072 _refine_ls_goodness_of_fit_obs 1.072 _refine_ls_hydrogen_treatment 'H atoms riding' _refine_ls_matrix_type full _refine_ls_number_parameters 254 _refine_ls_number_reflns 1590 _refine_ls_number_restraints 3 _refine_ls_restrained_S_all 1.071 _refine_ls_restrained_S_obs 1.071 _refine_ls_R_factor_all 0.0275 _refine_ls_R_factor_obs .0271 _refine_ls_shift/esd_max -0.001 _refine_ls_shift/esd_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.0414P)^2^+0.1374P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_all 0.0694 _refine_ls_wR_factor_obs .0689 _reflns_number_observed 1573 _reflns_number_total 1590 _reflns_observed_criterion >2sigma(I) _cod_data_source_file sx1015.cif _cod_data_source_block mn497 _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana The following automatic conversions were performed: '_exptl_crystal_density_meas' value 'not measured' was changed to '?' - the value is perceived as not measured. Automatic conversion script Id: cif_fix_values 3008 2015-01-20 13:52:24Z robertas The following automatic conversions were performed: '_refine_ls_weighting_scheme' value 'calc w = 1/[\s^2^(Fo^2^)+(0.0414P)^2^+0.1374P] where P=(Fo^2^+2Fc^2^)/3' was changed to 'calc'. New tag '_refine_ls_weighting_details' was created. The value of the new tag was set to 'w = 1/[\s^2^(Fo^2^)+(0.0414P)^2^+0.1374P] where P=(Fo^2^+2Fc^2^)/3'. Automatic conversion script Id: cif_fix_values 3143 2015-03-26 13:38:13Z robertas ; _cod_original_cell_volume 454.54(4) _cod_database_code 2006339 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 .0162(13) .0129(11) .0093(10) -.0058(10) .0026(10) -.0024(8) O2 .0181(13) .0141(11) .0139(11) -.0035(10) -.0058(10) .0062(9) O3 .0107(12) .0115(11) .0195(11) -.0013(9) .0040(10) -.0047(9) O4 .0113(12) .0198(11) .0137(10) -.0068(10) -.0018(9) .0019(9) O5 .0148(12) .0097(10) .0104(11) .0018(9) .0000(9) .0010(8) O6 .0143(13) .0071(11) .0305(13) .0018(10) -.0030(11) -.0010(9) C1 .011(2) .016(2) .009(2) -.0008(14) -.0007(14) .0011(13) C2 .010(2) .013(2) .013(2) -.0013(13) -.0036(14) .0037(12) C3 .011(2) .008(2) .017(2) -.0040(14) -.0005(14) -.0002(13) C4 .008(2) .016(2) .013(2) -.0047(14) .0017(14) -.0008(13) C5 .011(2) .012(2) .010(2) -.0029(14) .0007(13) .0016(12) C6 .018(2) .014(2) .017(2) -.0037(14) -.0020(14) .0000(13) O2' .0219(15) .0117(11) .0151(11) .0053(10) -.0046(10) -.0023(9) O3' .0232(14) .0110(11) .0122(11) -.0070(10) .0047(10) -.0008(9) O5' .0148(13) .0096(10) .0101(11) .0001(9) -.0007(9) -.0007(9) O6' .0081(12) .0142(11) .0210(12) .0017(9) -.0015(10) -.0013(9) C1' .010(2) .011(2) .017(2) .0005(14) -.0041(15) -.0013(13) C2' .007(2) .0082(15) .016(2) .0026(13) -.0023(14) .0005(12) C3' .014(2) .014(2) .011(2) -.0051(15) -.0027(15) .0052(13) C4' .009(2) .011(2) .015(2) -.0027(14) -.0003(14) -.0009(13) C5' .011(2) .014(2) .013(2) -.0077(14) -.0003(14) -.0031(13) C6' .011(2) .015(2) .012(2) -.0055(14) -.0011(14) .0000(13) O7 .0139(14) .0225(12) .0222(12) -.0067(11) .0018(11) -.0060(10) N1 .0073(14) .0146(13) .0121(13) -.0028(12) -.0010(11) -.0027(11) N2 .014(2) .027(2) .0160(14) -.0100(13) .0044(12) -.0052(12) C7 .013(2) .009(2) .016(2) .0003(14) -.0008(14) -.0016(12) O1W .0180(14) .0330(13) .0150(11) -.0111(11) -.0024(10) .0039(10) O2W .0188(14) .0209(12) .0172(11) -.0041(11) -.0015(10) .0009(9) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_group _atom_site_type_symbol O1 .5493(5) .6040(3) .06624(15) .0125(5) Uani d . 1 . O O2 .9142(5) .2662(3) .0059(2) .0153(5) Uani d . 1 . O H2 .7911(5) .1850(3) .0203(2) .018 Uiso d R 1 . H O3 .9820(5) .2111(3) -.2132(2) .0142(5) Uani d . 1 . O H3 .8017(5) .1792(3) -.2006(2) .017 Uiso d R 1 . H O4 .5074(5) .4987(3) -.2593(2) .0144(5) Uani d . 1 . O H4 .4772(5) .4996(3) -.3295(2) .017 Uiso d R 1 . H O5 .5813(5) .7184(3) -.09536(14) .0124(5) Uani d . 1 . O O6 .5383(5) 1.0403(3) -.2015(2) .0178(6) Uani d . 1 . O H6 .3410(5) 1.0989(3) -.1993(2) .021 Uiso d R 1 . H C1 .7255(7) .5872(4) -.0237(2) .0122(7) Uani d . 1 . C H1 .9193(7) .6113(4) -.0108(2) .015 Uiso d R 1 . H C2 .7611(7) .3967(4) -.0652(2) .0120(7) Uani d . 1 . C H2A .5653(7) .3716(4) -.0738(2) .014 Uiso d R 1 . H C3 .9319(7) .3872(4) -.1684(2) .0118(7) Uani d . 1 . C H3A 1.1259(7) .4127(4) -.1572(2) .014 Uiso d R 1 . H C4 .7826(7) .5337(4) -.2410(2) .0120(7) Uani d . 1 . C H4A .9027(7) .5317(4) -.3069(2) .014 Uiso d R 1 . H C5 .7448(7) .7193(4) -.1922(2) .0111(7) Uani d . 1 . C H5 .9404(7) .7422(4) -.1809(2) .013 Uiso d R 1 . H C6 .5778(8) .8735(4) -.2554(2) .0160(7) Uani d . 1 . C H6A .6870(8) .8846(4) -.3217(2) .019 Uiso d R 1 . H H6B .3873(8) .8491(4) -.2696(2) .019 Uiso d R 1 . H O2' .2267(5) 1.2285(3) .1784(2) .0175(6) Uani d . 1 . O H2' .1549(5) 1.2288(3) .1133(2) .021 Uiso d R 1 . H O3' .5850(5) 1.0056(3) .0270(2) .0152(5) Uani d . 1 . O H3' .6043(5) .9316(3) -.0304(2) .018 Uiso d R 1 . H O5' .4766(5) .8001(3) .31738(15) .0119(5) Uani d . 1 . O O6' .9058(5) .4935(3) .2989(2) .0150(5) Uani d . 1 . O H6' 1.0535(5) .3923(3) .2804(2) .018 Uiso d R 1 . H C1' .2996(7) .9775(4) .2979(2) .0127(7) Uani d . 1 . C H1'A .0941(7) .9677(4) .2920(2) .015 Uiso d R 1 . H C2' .4129(7) 1.0560(4) .1990(2) .0109(7) Uani d . 1 . C H2'A .6111(7) 1.0762(4) .2087(2) .013 Uiso d R 1 . H C3' .4359(7) .9292(4) .1097(2) .0124(7) Uani d . 1 . C H3'A .2360(7) .9290(4) .0894(2) .015 Uiso d R 1 . H C4' .5893(7) .7338(4) .1383(2) .0115(7) Uani d . 1 . C H4' .8013(7) .7272(4) .1431(2) .014 Uiso d R 1 . H C5' .4612(7) .6756(4) .2401(2) .0117(7) Uani d . 1 . C H5' .2530(7) .6738(4) .2327(2) .014 Uiso d R 1 . H C6' .6168(7) .4885(4) .2766(2) .0122(7) Uani d . 1 . C H6'B .5130(7) .4513(4) .3392(2) .015 Uiso d R 1 . H H6'A .6201(7) .3980(4) .2233(2) .015 Uiso d R 1 . H O7 -.1147(5) 1.0494(3) .4626(2) .0191(6) Uani d . 1 . O N1 .3142(6) 1.0887(3) .3827(2) .0112(6) Uani d . 1 . N H1N .4988(6) 1.1012(3) .4007(2) .050 Uiso d R 1 . H N2 .1848(6) 1.1804(4) .5466(2) .0181(7) Uani d . 1 . N H2BN .0674(6) 1.1933(4) .6022(2) .022 Uiso d R 1 . H H2AN .3485(6) 1.2178(4) .5454(2) .022 Uiso d R 1 . H C7 .1148(7) 1.1026(4) .4654(2) .0129(7) Uani d . 1 . C O1W .4781(5) .5040(3) .5398(2) .0212(6) Uani d . 1 . O H1W .6413(5) .5753(3) .5223(2) .025 Uiso d R 1 . H H2W .2914(5) .5966(3) .5217(2) .025 Uiso d R 1 . H O2W .9423(5) .6673(3) .4749(2) .0190(6) Uani d . 1 . O H3W .8971(5) .7858(3) .4824(2) .023 Uiso d R 1 . H H4W .9357(5) .6371(3) .4024(2) .023 Uiso d R 1 . H loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0311 0.0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0492 0.0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C1 O1 C4' 117.2(2) yes C1 O5 C5 112.9(2) yes O1 C1 O5 106.9(2) yes O1 C1 C2 109.7(2) yes O5 C1 C2 109.3(2) yes O2 C2 C1 108.9(2) yes O2 C2 C3 110.3(2) yes C1 C2 C3 108.7(2) yes O3 C3 C4 110.8(2) yes O3 C3 C2 113.0(2) yes C4 C3 C2 110.4(2) yes O4 C4 C3 108.4(3) yes O4 C4 C5 110.3(3) yes C3 C4 C5 109.1(2) yes O5 C5 C6 106.4(2) yes O5 C5 C4 109.0(2) yes C6 C5 C4 113.1(2) yes O6 C6 C5 109.4(2) yes C5' O5' C1' 112.0(2) yes N1 C1' O5' 107.7(2) yes N1 C1' C2' 111.0(2) yes O5' C1' C2' 109.1(2) yes O2' C2' C1' 108.3(2) yes O2' C2' C3' 111.1(2) yes C1' C2' C3' 112.4(2) yes O3' C3' C2' 106.3(2) yes O3' C3' C4' 112.7(3) yes C2' C3' C4' 111.4(2) yes O1 C4' C5' 105.4(2) yes O1 C4' C3' 112.4(2) yes C5' C4' C3' 110.1(2) yes O5' C5' C6' 107.2(2) yes O5' C5' C4' 110.6(2) yes C6' C5' C4' 112.9(2) yes O6' C6' C5' 109.4(3) yes C7 N1 C1' 121.3(3) yes O7 C7 N2 123.1(3) yes O7 C7 N1 122.0(3) yes N2 C7 N1 114.8(3) yes loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag O1 C1 . 1.390(4) yes O1 C4' . 1.435(4) yes O2 C2 . 1.438(4) yes O3 C3 . 1.435(3) yes O4 C4 . 1.423(4) yes O5 C1 . 1.429(4) yes O5 C5 . 1.442(3) yes O6 C6 . 1.434(4) yes C1 C2 . 1.523(4) yes C2 C3 . 1.523(4) yes C3 C4 . 1.512(4) yes C4 C5 . 1.528(4) yes C5 C6 . 1.506(4) yes O2' C2' . 1.427(4) yes O3' C3' . 1.426(4) yes O5' C5' . 1.421(4) yes O5' C1' . 1.435(3) yes O6' C6' . 1.429(4) yes C1' N1 . 1.430(4) yes C1' C2' . 1.519(4) yes C2' C3' . 1.521(4) yes C3' C4' . 1.534(4) yes C4' C5' . 1.518(4) yes C5' C6' . 1.514(4) yes O7 C7 . 1.242(4) yes N1 C7 . 1.380(4) yes N2 C7 . 1.329(4) yes loop_ _cod_related_entry_id _cod_related_entry_database _cod_related_entry_code 1 ChemSpider 21186366