#------------------------------------------------------------------------------ #$Date: 2025-08-18 23:52:38 +0100 (Mon, 18 Aug 2025) $ #$Revision: 301791 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/63/2006381.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2006381 loop_ _publ_author_name 'Jones, Peter G.' 'Th\"onnessen, Holger' 'Kara\;car, Atilla' 'Schmutzler, Reinhard' _publ_section_title ; 1,8-Bis(dimethylphosphino)naphthalene: an Unusual Case of Pseudosymmetry ; _journal_issue 8 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1119 _journal_page_last 1122 _journal_paper_doi 10.1107/S010827019700468X _journal_volume 53 _journal_year 1997 _chemical_formula_sum 'C14 H18 P2' _chemical_formula_weight 248.22 _chemical_name_systematic ; 1,8-Bis(dimethylphosphino)naphthalene ; _space_group_IT_number 106 _symmetry_cell_setting tetragonal _symmetry_space_group_name_Hall 'P 4c -2ab' _symmetry_space_group_name_H-M 'P 42 b c' _audit_creation_method SHELXL _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 8 _cell_length_a 12.8075(18) _cell_length_b 12.8075(18) _cell_length_c 16.419(3) _cell_measurement_reflns_used 48 _cell_measurement_temperature 143(2) _cell_measurement_theta_max 11.5 _cell_measurement_theta_min 10 _cell_volume 2693.2(7) _computing_cell_refinement DIF4 _computing_data_collection 'DIF4 (Stoe & Cie, 1992a)' _computing_data_reduction 'REDU4 (Stoe & Cie, 1992b)' _computing_molecular_graphics 'XP (Siemens, 1994)' _computing_publication_material SHELXL93 _computing_structure_refinement 'SHELXL93 (Sheldrick, 1993)' _computing_structure_solution 'SHELXS86 (Sheldrick, 1990)' _diffrn_ambient_temperature 143(2) _diffrn_measurement_device 'Stoe STADI4' _diffrn_measurement_method \w/\q-scans _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0123 _diffrn_reflns_av_sigmaI/netI 0.0336 _diffrn_reflns_limit_h_max 16 _diffrn_reflns_limit_h_min -16 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min -11 _diffrn_reflns_limit_l_max 21 _diffrn_reflns_limit_l_min -21 _diffrn_reflns_number 3208 _diffrn_reflns_theta_max 27.50 _diffrn_reflns_theta_min 3.18 _diffrn_standards_decay_% 0 _diffrn_standards_interval_time 90 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.295 _exptl_absorpt_correction_type none _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 1.224 _exptl_crystal_density_method 'not measured' _exptl_crystal_description tablet _exptl_crystal_F_000 1056 _exptl_crystal_size_max 0.80 _exptl_crystal_size_mid 0.30 _exptl_crystal_size_min 0.20 _refine_diff_density_max 0.318 _refine_diff_density_min -0.235 _refine_ls_abs_structure_details 'Flack (1983)' _refine_ls_abs_structure_Flack 0.20(17) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_all 1.064 _refine_ls_goodness_of_fit_obs 1.038 _refine_ls_hydrogen_treatment 'H atoms: methyl groups rigid, others riding' _refine_ls_matrix_type full _refine_ls_number_parameters 151 _refine_ls_number_reflns 3092 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.064 _refine_ls_restrained_S_obs 1.038 _refine_ls_R_factor_all 0.0524 _refine_ls_R_factor_obs .041 _refine_ls_shift/esd_max 0.004 _refine_ls_shift/esd_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.0420P)^2^+1.7207P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_all 0.1010 _refine_ls_wR_factor_obs .0913 _reflns_number_observed 2670 _reflns_number_total 3092 _reflns_observed_criterion >2sigma(I) _cod_data_source_file fg1288.cif _cod_data_source_block kachel _cod_depositor_comments ; The following automatic conversions were performed: '_geom_bond_publ_flag' value 'Y' changed to 'y' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (18 times). Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_refine_ls_weighting_scheme' value 'calc w = 1/[\s^2^(Fo^2^)+(0.0420P)^2^+1.7207P] where P=(Fo^2^+2Fc^2^)/3' was changed to 'calc'. New tag '_refine_ls_weighting_details' was created. The value of the new tag was set to 'w = 1/[\s^2^(Fo^2^)+(0.0420P)^2^+1.7207P] where P=(Fo^2^+2Fc^2^)/3'. Automatic conversion script Id: cif_fix_values 3143 2015-03-26 13:38:13Z robertas ; _cod_original_cell_volume 2693.2(8) _cod_database_code 2006381 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, z' '-y, x, z+1/2' 'y, -x, z+1/2' 'x+1/2, -y+1/2, z' '-x+1/2, y+1/2, z' '-y+1/2, -x+1/2, z+1/2' 'y+1/2, x+1/2, z+1/2' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 P .0251(4) .0196(4) .0172(3) -.0008(3) -.0014(3) .0024(3) C1 .0195(17) .0203(19) .021(2) -.0011(10) .0024(11) -.0004(17) C2 .038(2) .0181(17) .0176(16) -.0019(15) .0018(16) -.0005(14) C3 .0350(18) .0194(16) .0244(17) -.0040(17) -.0017(17) -.0087(14) C4 .0302(19) .024(2) .018(2) .0032(14) -.0022(13) -.0065(16) C5 .017(3) .016(3) .018(3) .0034(15) .000 .000 C6 .017(3) .023(3) .014(3) .0006(15) .000 .000 C7 .0342(18) .0321(18) .0272(16) -.0040(14) .0064(13) .0052(13) C8 .0327(16) .0266(16) .0352(16) .0058(13) -.0041(18) .0077(15) P' .0232(4) .0182(4) .0167(3) -.0010(3) -.0013(3) -.0009(3) C1' .0195(15) .0161(17) .0126(18) .0017(11) -.0001(11) -.0008(15) C2' .0259(16) .0173(17) .0286(19) -.0027(15) -.0003(17) -.0001(15) C3' .0370(19) .0232(18) .0228(18) .0017(16) -.0004(16) .0075(15) C4' .029(2) .031(2) .016(2) .0008(13) -.0018(12) .0003(17) C5' .019(4) .031(4) .017(3) .0006(15) .000 .000 C6' .011(3) .014(3) .019(3) .0013(13) .000 .000 C7' .0323(18) .0330(19) .0307(16) .0048(15) .0085(14) -.0049(14) C8' .0325(15) .0250(15) .0264(14) -.0068(12) -.0058(16) -.0020(14) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_group _atom_site_type_symbol P .96206(6) .11367(5) .64850(4) .02063(17) Uani d . 1 . P C1 1.0001(2) .1000(4) .7566(3) .0203(9) Uani d . 1 . C C2 1.0149(3) .1885(3) .8020(3) .0244(8) Uani d . 1 . C H2 1.0192 .2538 .7748 .029 Uiso calc R 1 . H C3 1.0243(3) .1867(3) .8879(2) .0263(8) Uani d . 1 . C H3 1.0381 .2493 .9171 .032 Uiso calc R 1 . H C4 1.0133(3) .0942(4) .9286(3) .0242(9) Uani d . 1 . C H4 1.0146 .0929 .9864 .029 Uiso calc R 1 . H C5 1.0000 .0000 .8841(4) .0166(14) Uani d S 1 . C C6 1.0000 .0000 .7968(5) .0178(14) Uani d S 1 . C C7 1.0790(3) .1753(3) .6050(2) .0312(7) Uani d . 1 . C H7A 1.0942 .2400 .6345 .037 Uiso calc R 1 . H H7B 1.0667 .1912 .5474 .037 Uiso calc R 1 . H H7C 1.1384 .1275 .6099 .037 Uiso calc R 1 . H C8 .8765(2) .2299(2) .6524(2) .0315(7) Uani d . 1 . C H8A .9163 .2898 .6728 .038 Uiso calc R 1 . H H8B .8175 .2162 .6889 .038 Uiso calc R 1 . H H8C .8503 .2453 .5976 .038 Uiso calc R 1 . H P' .54102(6) .11119(5) .35336(5) .01939(16) Uani d . 1 . P C1' .5141(3) .0989(3) .2429(2) .0160(7) Uani d . 1 . C C2' .5193(3) .1886(3) .1960(3) .0239(8) Uani d . 1 . C H2' .5248 .2542 .2226 .029 Uiso calc R 1 . H C3' .5169(3) .1862(4) .1107(3) .0277(9) Uani d . 1 . C H3' .5205 .2493 .0804 .033 Uiso calc R 1 . H C4' .5095(3) .0946(4) .0723(3) .0256(10) Uani d . 1 . C H4' .5107 .0935 .0145 .031 Uiso calc R 1 . H C5' .5000 .0000 .1145(4) .0222(15) Uani d S 1 . C C6' .5000 .0000 .2028(5) .0146(13) Uani d S 1 . C C7' .4194(3) .1729(3) .3891(2) .0320(8) Uani d . 1 . C H7'1 .4032 .2331 .3546 .038 Uiso calc R 1 . H H7'2 .4283 .1960 .4456 .038 Uiso calc R 1 . H H7'3 .3622 .1223 .3862 .038 Uiso calc R 1 . H C8' .6269(2) .2269(2) .3576(2) .0279(6) Uani d . 1 . C H8'1 .6876 .2158 .3223 .034 Uiso calc R 1 . H H8'2 .6504 .2379 .4137 .034 Uiso calc R 1 . H H8'3 .5882 .2885 .3390 .034 Uiso calc R 1 . H loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' P P 0.1023 0.0942 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag C7 P C1 . . 101.49(15) y C7 P C8 . . 98.67(16) y C1 P C8 . . 101.46(18) y C2 C1 C6 . . 119.1(4) y C2 C1 P . . 118.8(3) y C6 C1 P . . 121.6(4) y C1 C2 C3 . . 122.8(5) ? C4 C3 C2 . . 119.4(4) ? C3 C4 C5 . . 119.8(4) ? C4 C5 C4 . 2_755 118.2(6) ? C4 C5 C6 . . 120.9(3) ? C4 C5 C6 2_755 . 120.9(3) ? C5 C6 C1 . 2_755 117.3(3) y C5 C6 C1 . . 117.3(3) y C1 C6 C1 2_755 . 125.5(6) y C7' P' C8' . . 98.47(16) y C7' P' C1' . . 101.02(15) y C8' P' C1' . . 102.48(17) y C2' C1' C6' . . 118.8(4) y C2' C1' P' . . 117.7(3) y C6' C1' P' . . 123.1(3) y C1' C2' C3' . . 122.5(5) ? C4' C3' C2' . . 119.5(5) ? C3' C4' C5' . . 122.2(5) ? C4' C5' C4' 2_655 . 120.8(7) ? C4' C5' C6' 2_655 . 119.6(3) ? C4' C5' C6' . . 119.6(3) ? C1' C6' C1' . 2_655 125.5(6) y C1' C6' C5' . . 117.3(3) y C1' C6' C5' 2_655 . 117.3(3) y loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag P C7 . 1.837(3) y P C1 . 1.848(5) y P C8 . 1.850(3) y C1 C2 . 1.370(6) y C1 C6 . 1.441(6) y C2 C3 . 1.416(6) y C3 C4 . 1.367(7) y C4 C5 . 1.420(5) y C5 C6 . 1.434(10) y P' C7' . 1.842(3) y P' C8' . 1.847(3) y P' C1' . 1.853(4) y C1' C2' . 1.385(6) y C1' C6' . 1.439(5) y C2' C3' . 1.401(6) y C3' C4' . 1.335(7) y C4' C5' . 1.401(6) y C5' C6' . 1.449(10) y loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_4 _geom_torsion _geom_torsion_publ_flag C7 P C1 C2 . . 65.8(3) ? C8 P C1 C2 . . -35.7(3) ? C7 P C1 C6 . . -123.1(2) ? C8 P C1 C6 . . 135.5(2) ? C6 C1 C2 C3 . . -3.8(5) ? P C1 C2 C3 . . 167.6(3) y C1 C2 C3 C4 . . -3.2(6) ? C2 C3 C4 C5 . . 4.4(6) ? C3 C4 C5 C4 . 2_755 -178.7(4) ? C3 C4 C5 C6 . . 1.3(4) ? C4 C5 C6 C1 . 2_755 172.0(2) ? C4 C5 C6 C1 2_755 2_755 -8.0(2) ? C4 C5 C6 C1 . . -8.0(2) ? C4 C5 C6 C1 2_755 . 172.0(2) ? C2 C1 C6 C5 . . 9.1(3) ? P C1 C6 C5 . . -162.00(14) y C2 C1 C6 C1 . 2_755 -170.9(3) ? P C1 C6 C1 . 2_755 18.00(14) y C7' P' C1' C2' . . 74.9(3) ? C8' P' C1' C2' . . -26.4(3) ? C7' P' C1' C6' . . -112.4(3) ? C8' P' C1' C6' . . 146.3(2) ? C6' C1' C2' C3' . . -3.4(5) ? P' C1' C2' C3' . . 169.6(3) y C1' C2' C3' C4' . . -0.1(6) ? C2' C3' C4' C5' . . 2.5(6) ? C3' C4' C5' C4' . 2_655 178.8(4) ? C3' C4' C5' C6' . . -1.2(4) ? C2' C1' C6' C1' . 2_655 -175.5(3) ? P' C1' C6' C1' . 2_655 11.88(15) y C2' C1' C6' C5' . . 4.5(3) ? P' C1' C6' C5' . . -168.12(15) y C4' C5' C6' C1' 2_655 . 177.6(2) ? C4' C5' C6' C1' . . -2.4(2) ? C4' C5' C6' C1' 2_655 2_655 -2.4(2) ? C4' C5' C6' C1' . 2_655 177.6(2) ? loop_ _cod_related_entry_id _cod_related_entry_database _cod_related_entry_code 1 ChemSpider 10452614 2 PubChem 139055598