#------------------------------------------------------------------------------ #$Date: 2016-02-19 14:29:56 +0000 (Fri, 19 Feb 2016) $ #$Revision: 176759 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/65/2006516.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2006516 loop_ _publ_author_name ' Jerzykiewicz, Lucjan B.' ' Lis, T.' _publ_section_title ; Calcium D-3-Phosphoglycerate Tetrahydrate at 85K ; _journal_issue 9 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1249 _journal_page_last 1251 _journal_paper_doi 10.1107/S0108270197005143 _journal_volume 53 _journal_year 1997 _chemical_formula_moiety 'Ca 2+, (C3 H5 O7 P1) 2-, 4H2 O' _chemical_formula_sum 'C3 H13 Ca O11 P' _chemical_formula_weight 296.18 _chemical_name_systematic ; calcium D-3-phoshoglycerate tetrahydrate ; _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _cell_angle_alpha 90. _cell_angle_beta 102.76(3) _cell_angle_gamma 90. _cell_formula_units_Z 2 _cell_length_a 5.751(2) _cell_length_b 7.718(3) _cell_length_c 12.469(4) _cell_measurement_reflns_used 70 _cell_measurement_temperature 85(2) _cell_measurement_theta_max 13 _cell_measurement_theta_min 10 _cell_volume 539.8(3) _computing_cell_refinement 'Kuma KM4 Software' _computing_data_collection 'Kuma KM4 Software (Kuma Diffraction, 1989)' _computing_data_reduction 'Kuma KM4 Software' _computing_molecular_graphics 'ORTEPII (Johnson, 1976)' _computing_structure_refinement 'SHELXL93 (Sheldrick, 1993)' _computing_structure_solution 'SHELXS86 (Sheldrick, 1990)' _diffrn_ambient_temperature 85(2) _diffrn_measurement_device 'Kuma KM4 computer-controlled four-circle \w/2\q diffractometer' _diffrn_measurement_method \w/2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71069 _diffrn_reflns_av_R_equivalents 0.0180 _diffrn_reflns_av_sigmaI/netI 0.0329 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 18 _diffrn_reflns_limit_l_min -18 _diffrn_reflns_number 4382 _diffrn_reflns_theta_max 32.5 _diffrn_reflns_theta_min 3 _diffrn_standards_decay_% 2.3 _diffrn_standards_interval_count 100 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.778 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.822(2) _exptl_crystal_density_meas 1.808 _exptl_crystal_density_meas_temp 295(2) _exptl_crystal_density_method 'flotation in C~2~H~5~I/CCl~4~ at room temperature' _exptl_crystal_description block _exptl_crystal_F_000 308 _exptl_crystal_size_max 0.2 _exptl_crystal_size_mid 0.1 _exptl_crystal_size_min 0.1 _refine_diff_density_max 0.43 _refine_diff_density_min -0.35 _refine_ls_abs_structure_details 'based on known stereochemistry at C(3)' _refine_ls_abs_structure_Flack '-0.03(2) (Flack, 1983)' _refine_ls_extinction_method none _refine_ls_goodness_of_fit_all 1.076 _refine_ls_goodness_of_fit_obs 1.078 _refine_ls_hydrogen_treatment refall _refine_ls_matrix_type full _refine_ls_number_parameters 196 _refine_ls_number_reflns 3910 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.076 _refine_ls_restrained_S_obs 1.078 _refine_ls_R_factor_all 0.0285 _refine_ls_R_factor_obs .0227 _refine_ls_shift/esd_max -0.283 _refine_ls_shift/esd_mean 0.013 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.0304P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_all 0.0567 _refine_ls_wR_factor_obs .0550 _reflns_number_observed 3674 _reflns_number_total 3910 _reflns_observed_criterion >2sigma(I) _cod_data_source_file mu1266.cif _cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: Tag '_exptl_crystal_density_meas' value '1.808 at room temperature' was modified to '1.808'. New tag '_exptl_crystal_density_meas_temp' was created. The value of new tag set to - '295(2)'. Automatic conversion script Id: cif_fix_values 3130 2015-03-20 13:55:49Z robertas ; _cod_original_cell_volume 539.8(4) _cod_original_sg_symbol_H-M 'P 21' _cod_database_code 2006516 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Ca .00483(8) .00562(9) .00649(9) .00059(8) .00141(6) .00010(8) P .00603(12) .00491(11) .00701(12) .00025(10) .00114(9) -.00029(10) O(31) .0121(4) .0097(4) .0073(4) -.0029(4) .0018(3) .0000(4) O(32) .0060(4) .0091(5) .0168(5) .0002(3) .0006(4) -.0034(4) O(33) .0097(4) .0063(4) .0167(5) .0028(4) .0029(4) -.0003(4) O(3) .0126(4) .0078(4) .0059(4) -.0020(4) .0027(3) -.0002(3) O(2) .0056(4) .0117(5) .0113(4) -.0028(4) .0040(3) -.0040(4) O(1) .0072(4) .0093(4) .0103(4) .0013(4) .0018(3) -.0036(4) O(11) .0050(4) .0145(5) .0105(4) -.0013(4) .0020(3) -.0035(4) O(4) .0107(4) .0084(4) .0087(4) .0002(4) .0040(4) -.0005(4) O(5) .0066(4) .0084(4) .0089(4) .0009(3) .0025(3) .0000(3) O(6) .0080(4) .0088(4) .0151(5) .0010(4) .0021(4) -.0020(4) O(7) .0124(5) .0150(5) .0142(5) .0038(4) -.0035(4) -.0059(4) C(1) .0067(5) .0069(5) .0067(5) .0008(4) .0025(4) .0010(4) C(2) .0056(5) .0074(5) .0061(5) -.0011(3) .0020(4) -.0008(4) C(3) .0116(5) .0071(5) .0067(5) .0008(4) .0025(4) -.0009(4) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_group Ca .24959(4) .5 .22274(2) .00562(5) Uani d . 1 . P .50170(5) 1.06060(5) .19242(2) .00603(6) Uani d . 1 . O(31) .42671(16) .99230(16) .07690(7) .0097(2) Uani d . 1 . O(32) .78241(16) 1.04494(14) .23198(8) .0109(2) Uani d . 1 . O(33) .42544(17) 1.23728(13) .21806(9) .0109(2) Uani d . 1 . O(3) .40082(17) .91625(12) .26249(7) .0087(2) Uani d . 1 . O(2) .24489(17) .66059(13) .39009(8) .0092(2) Uani d . 1 . O(11) .63600(16) .55679(15) .34483(8) .0090(2) Uani d . 1 . O(1) .86420(16) .73498(13) .46652(8) .0100(2) Uani d . 1 . O(4) .45310(17) .63459(13) .09718(8) .0090(2) Uani d . 1 . O(5) -.01440(16) .33976(13) .32005(8) .0078(2) Uani d . 1 . O(6) -.06097(17) .71108(14) .15874(8) .0107(2) Uani d . 1 . O(7) .00134(19) .38182(15) .05749(9) .0149(2) Uani d . 1 . C(1) .6660(3) .67847(16) .41396(9) .0066(2) Uani d . 1 . C(2) .4422(2) .76843(16) .43376(9) .0063(2) Uani d . 1 . C(3) .4210(3) .94490(17) .37819(10) .0084(2) Uani d . 1 . H(2) .460(4) .788(3) .5117(16) .003(4) Uiso d . 1 . H(3) .283(4) 1.001(4) .3910(18) .019(6) Uiso d . 1 . H(3') .568(4) 1.011(4) .4124(16) .010(5) Uiso d . 1 . H(20) .138(6) .693(4) .416(3) .035(8) Uiso d . 1 . H(32) .860(5) 1.137(4) .256(3) .022(6) Uiso d . 1 . H(4) .462(5) .587(4) .036(3) .032(8) Uiso d . 1 . H(41) .424(6) .745(5) .095(3) .042(9) Uiso d . 1 . H(5) .055(5) .326(4) .392(3) .026(7) Uiso d . 1 . H(51) -.109(5) .416(4) .333(3) .028(7) Uiso d . 1 . H(6) -.205(6) .680(5) .144(3) .040(8) Uiso d . 1 . H(61) -.055(5) .796(4) .192(3) .022(6) Uiso d . 1 . H(7) -.116(6) .421(5) .018(3) .043(9) Uiso d . 1 . H(71) .059(6) .310(5) .019(3) .037(8) Uiso d . 1 . loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' P P 0.1023 0.0942 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Ca Ca 0.2262 0.3064 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle _geom_angle_publ_flag O(31) P O(32) . 109.20(10) yes O(31) P O(33) . 119.40(10) yes O(32) P O(33) . 109.30(10) yes O(31) P O(3) . 102.50(10) yes O(32) P O(3) . 104.10(10) yes O(33) P O(3) . 111.10(10) yes C(3) O(3) P . 118.80(10) yes O(3) C(3) C(2) . 107.50(10) yes O(2) C(2) C(3) . 112.00(10) yes C(3) C(2) C(1) . 108.60(10) yes O(2) C(2) C(1) . 107.60(10) yes O(1) C(1) C(2) . 117.1(2) yes O(11) C(1) C(2) . 117.1(2) yes O(11) C(1) O(1) . 125.8(2) yes C(2) O(2) Ca . 118.00(10) ? C(1) O(11) Ca . 121.90(10) ? O(33) Ca O(4) 1_545 94.90(10) ? O(33) Ca O(7) 1_545 79.80(10) ? O(4) Ca O(7) . 83.60(10) ? O(33) Ca O(6) 1_545 153.20(10) ? O(4) Ca O(6) . 85.60(10) ? O(7) Ca O(6) . 73.60(10) ? O(33) Ca O(2) 1_545 124.50(10) ? O(4) Ca O(2) . 116.10(10) ? O(7) Ca O(2) . 144.00(10) ? O(6) Ca O(2) . 78.00(10) ? O(33) Ca O(11) 1_545 80.10(10) ? O(4) Ca O(11) . 79.70(10) ? O(7) Ca O(11) . 152.50(10) ? O(6) Ca O(11) . 126.10(10) ? O(2) Ca O(11) . 63.50(10) ? O(33) Ca O(5) 1_545 83.80(10) ? O(4) Ca O(5) . 168.90(10) ? O(7) Ca O(5) . 85.30(10) ? O(6) Ca O(5) . 90.60(10) ? O(2) Ca O(5) . 73.10(10) ? O(11) Ca O(5) . 110.90(10) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag P O(31) . 1.505(2) yes P O(32) . 1.585(2) yes P O(33) . 1.489(2) yes P O(3) . 1.6020(10) yes O(3) C(3) . 1.439(2) yes O(2) C(2) . 1.416(2) yes O(1) C(1) . 1.261(2) yes O(11) C(1) . 1.261(2) yes C(1) C(2) . 1.530(2) yes C(2) C(3) . 1.521(2) yes Ca O(2) . 2.432(2) yes Ca O(11) . 2.440(2) yes Ca O(33) 1_545 2.272(2) yes Ca O(4) . 2.389(2) yes Ca O(5) . 2.474(2) yes Ca O(6) . 2.419(2) yes Ca O(7) . 2.412(2) yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C(3) O(3) P O(31) -174.70(10) yes C(3) O(3) P O(32) 71.60(10) yes C(3) O(3) P O(33) -46.00(10) yes P O(3) C(3) C(2) -150.10(10) yes O(2) C(2) C(3) O(3) -58.0(2) yes O(11) C(1) C(2) O(2) 15.9(2) yes O(1) C(1) C(2) O(2) -165.5(2) yes O(1) C(1) C(2) C(3) 73.1(2) yes O(11) C(1) C(2) C(3) -105.5(2) yes C(1) C(2) C(3) O(3) 60.7(2) yes