#------------------------------------------------------------------------------ #$Date: 2011-09-10 04:16:28 +0100 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2006580.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2006580 loop_ _publ_author_name 'Johannes, H.-H.' 'Grahn, W.' 'Dix, I.' 'Jones, P. G.' _publ_section_title ; 5-Iodo-2-[iodo(5-iodo-1,3,3-trimethyl-2-indolinylidene)methyl]-1,3,3-trimethyl-3H-indolium Perchlorate: a Highly Overcrowded Cyanine Dye ; _journal_issue 10 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1432 _journal_page_last 1434 _journal_volume 53 _journal_year 1997 _chemical_formula_moiety 'C23 H24 I3 N2 1+, Cl O4 1-' _chemical_formula_sum 'C23 H24 Cl I3 N2 O4' _chemical_formula_weight 808.59 _chemical_name_systematic ; 10-Iodo-bis(5-iodo-1,3,3-trimethylindoline-2yl)monomethinium Perchlorate ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _audit_creation_method SHELXL _cell_angle_alpha 90.00 _cell_angle_beta 106.30(2) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 11.448(2) _cell_length_b 12.098(2) _cell_length_c 19.305(3) _cell_measurement_reflns_used 52 _cell_measurement_temperature 143(2) _cell_measurement_theta_max 11.5 _cell_measurement_theta_min 10 _cell_volume 2566.2(8) _computing_cell_refinement DIF4 _computing_data_collection 'DIF4 (Stoe & Cie, 1992a)' _computing_data_reduction 'REDU4 (Stoe & Cie, 1992b)' _computing_molecular_graphics 'XP (Siemens, 1994b)' _computing_publication_material SHELXL93 _computing_structure_refinement 'SHELXL93 (Sheldrick, 1993)' _computing_structure_solution 'SHELXS86 (Sheldrick, 1990)' _diffrn_ambient_temperature 143(2) _diffrn_measurement_device 'Stoe STADI-4' _diffrn_measurement_method \w/\q-scans _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0196 _diffrn_reflns_av_sigmaI/netI 0.0327 _diffrn_reflns_limit_h_max 13 _diffrn_reflns_limit_h_min -13 _diffrn_reflns_limit_k_max 1 _diffrn_reflns_limit_k_min -14 _diffrn_reflns_limit_l_max 22 _diffrn_reflns_limit_l_min 0 _diffrn_reflns_number 4672 _diffrn_reflns_theta_max 25.02 _diffrn_reflns_theta_min 3.25 _diffrn_standards_decay_% 0 _diffrn_standards_interval_time 60 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 3.790 _exptl_absorpt_correction_T_max 0.895 _exptl_absorpt_correction_T_min 0.728 _exptl_absorpt_correction_type 'psi-scans (XEMP; Siemens, 1994a)' _exptl_crystal_colour 'dark red in transmitted light, metallic green in reflected light' _exptl_crystal_density_diffrn 2.093 _exptl_crystal_density_method 'not measured' _exptl_crystal_description tablet _exptl_crystal_F_000 1536 _exptl_crystal_size_max 0.42 _exptl_crystal_size_mid 0.24 _exptl_crystal_size_min 0.12 _refine_diff_density_max 0.586 _refine_diff_density_min -0.554 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_all 1.076 _refine_ls_goodness_of_fit_obs 1.081 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 304 _refine_ls_number_reflns 4519 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.076 _refine_ls_restrained_S_obs 1.081 _refine_ls_R_factor_all 0.0370 _refine_ls_R_factor_obs 0.0286 _refine_ls_shift/esd_max 0.001 _refine_ls_shift/esd_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_scheme 'calc w = 1/[\s^2^(Fo^2^)+(0.0179P)^2^+5.0588P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_wR_factor_all 0.0599 _refine_ls_wR_factor_obs 0.0558 _reflns_number_observed 3933 _reflns_number_total 4519 _reflns_observed_criterion >2sigma(I) _[local]_cod_data_source_file fg1330.cif _[local]_cod_data_source_block chris _[local]_cod_cif_authors_sg_H-M 'P 21/c' _cod_depositor_comments ; The following automatic conversions were performed: '_geom_bond_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (9 times). '_geom_angle_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (7 times). Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 2566.4(7) _cod_database_code 2006580 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 I1 0.03118(18) 0.02225(17) 0.02336(17) 0.00419(14) 0.00768(13) -0.00327(13) I2 0.02809(17) 0.02717(17) 0.01905(16) -0.00093(14) 0.00772(13) 0.00364(13) I3 0.02666(17) 0.02723(17) 0.01974(16) 0.00133(14) 0.00873(13) -0.00035(13) N1 0.020(2) 0.019(2) 0.0154(19) 0.0017(16) 0.0066(16) -0.0012(16) N1' 0.019(2) 0.018(2) 0.019(2) -0.0028(16) 0.0059(16) 0.0000(16) C2 0.016(2) 0.016(2) 0.017(2) -0.0045(18) 0.0040(19) -0.0051(18) C2' 0.015(2) 0.017(2) 0.025(2) 0.0024(18) 0.0087(19) 0.0013(19) C3 0.022(2) 0.026(3) 0.016(2) 0.001(2) 0.010(2) 0.003(2) C3' 0.021(2) 0.016(2) 0.022(2) 0.0006(19) 0.005(2) 0.0020(19) C4 0.027(3) 0.025(3) 0.014(2) -0.007(2) 0.009(2) -0.002(2) C4' 0.023(2) 0.011(2) 0.030(3) -0.0005(19) 0.010(2) 0.001(2) C5 0.018(2) 0.024(2) 0.016(2) -0.002(2) 0.0045(19) 0.0014(19) C5' 0.021(2) 0.029(3) 0.017(2) 0.006(2) 0.004(2) 0.003(2) C6 0.019(2) 0.021(2) 0.025(3) -0.004(2) 0.006(2) 0.000(2) C6' 0.023(2) 0.016(2) 0.027(3) -0.001(2) 0.006(2) -0.007(2) C7 0.027(3) 0.022(3) 0.016(2) -0.001(2) 0.006(2) -0.0017(19) C7' 0.021(2) 0.020(2) 0.028(3) 0.002(2) 0.007(2) 0.001(2) C8 0.020(2) 0.020(2) 0.016(2) -0.004(2) 0.0035(19) -0.0012(19) C8' 0.014(2) 0.022(2) 0.017(2) 0.0010(19) 0.0044(18) 0.0033(19) C9 0.018(2) 0.023(3) 0.021(2) -0.008(2) 0.0064(19) -0.006(2) C9' 0.016(2) 0.024(2) 0.018(2) 0.0031(19) 0.0054(19) -0.0014(19) C10 0.021(2) 0.019(2) 0.024(2) -0.001(2) 0.010(2) -0.006(2) C11 0.026(3) 0.028(3) 0.023(2) 0.004(2) 0.014(2) 0.001(2) C11' 0.028(3) 0.027(3) 0.023(3) -0.013(2) 0.009(2) 0.000(2) C12 0.043(3) 0.027(3) 0.018(3) 0.002(2) 0.007(2) -0.005(2) C12' 0.032(3) 0.017(2) 0.026(3) 0.008(2) 0.009(2) -0.001(2) C13 0.022(3) 0.040(3) 0.030(3) 0.003(2) 0.013(2) 0.006(2) C13' 0.031(3) 0.025(3) 0.026(3) -0.005(2) 0.011(2) -0.003(2) Cl 0.0467(8) 0.0270(7) 0.0270(7) 0.0055(6) 0.0141(6) 0.0027(5) O1 0.086(4) 0.071(3) 0.044(3) 0.025(3) 0.001(3) 0.024(2) O2 0.100(4) 0.092(4) 0.053(3) -0.037(3) 0.037(3) 0.001(3) O3 0.118(5) 0.106(5) 0.069(4) 0.077(4) 0.043(3) 0.021(3) O4 0.109(5) 0.059(3) 0.099(4) -0.033(3) 0.012(4) -0.024(3) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol I1 0.70025(3) 0.71656(3) 0.366676(17) 0.02559(9) Uani d . 1 I I2 0.99492(3) 0.10332(3) 0.638937(16) 0.02455(9) Uani d . 1 I I3 0.68285(3) 0.48954(3) -0.092631(16) 0.02409(9) Uani d . 1 I N1 0.8497(3) 0.3937(3) 0.36337(19) 0.0180(8) Uani d . 1 N N1' 0.6535(3) 0.4459(3) 0.22268(19) 0.0186(8) Uani d . 1 N C2 0.7798(4) 0.4760(4) 0.3787(2) 0.0164(9) Uani d . 1 C C2' 0.6966(4) 0.5433(4) 0.2537(2) 0.0182(10) Uani d . 1 C C3 0.7693(4) 0.4563(4) 0.4560(2) 0.0203(10) Uani d . 1 C C3' 0.7074(4) 0.6234(4) 0.1932(2) 0.0196(10) Uani d . 1 C C4 0.8705(4) 0.2906(4) 0.5398(2) 0.0214(10) Uani d . 1 C H4 0.8430 0.3129 0.5797 0.026 Uiso calc R 1 H C4' 0.6892(4) 0.5625(4) 0.0597(3) 0.0209(10) Uani d . 1 C H4' 0.7106 0.6327 0.0448 0.025 Uiso calc R 1 H C5 0.9429(4) 0.1969(4) 0.5438(2) 0.0193(10) Uani d . 1 C C5' 0.6623(4) 0.4738(4) 0.0117(2) 0.0223(10) Uani d . 1 C C6 0.9835(4) 0.1628(4) 0.4860(2) 0.0217(10) Uani d . 1 C H6 1.0317 0.0979 0.4901 0.026 Uiso calc R 1 H C6' 0.6281(4) 0.3717(4) 0.0322(3) 0.0222(10) Uani d . 1 C H6' 0.6090 0.3129 -0.0018 0.027 Uiso calc R 1 H C7 0.9543(4) 0.2228(4) 0.4226(2) 0.0218(10) Uani d . 1 C H7 0.9817 0.2007 0.3826 0.026 Uiso calc R 1 H C7' 0.6216(4) 0.3548(4) 0.1025(3) 0.0229(10) Uani d . 1 C H7' 0.5982 0.2855 0.1175 0.027 Uiso calc R 1 H C8 0.8840(4) 0.3156(4) 0.4196(2) 0.0193(10) Uani d . 1 C C8' 0.6505(4) 0.4429(4) 0.1488(2) 0.0178(10) Uani d . 1 C C9 0.8399(4) 0.3498(4) 0.4764(2) 0.0208(10) Uani d . 1 C C9' 0.6837(4) 0.5455(4) 0.1291(2) 0.0189(10) Uani d . 1 C C10 0.7283(4) 0.5575(4) 0.3286(2) 0.0205(10) Uani d . 1 C C11 0.9043(4) 0.3911(4) 0.3040(2) 0.0245(11) Uani d . 1 C H11A 0.8573 0.3415 0.2662 0.029 Uiso calc R 1 H H11B 0.9882 0.3642 0.3214 0.029 Uiso calc R 1 H H11C 0.9042 0.4657 0.2842 0.029 Uiso calc R 1 H C11' 0.6047(4) 0.3559(4) 0.2563(3) 0.0258(11) Uani d . 1 C H11D 0.6702 0.3041 0.2787 0.031 Uiso calc R 1 H H11E 0.5413 0.3172 0.2196 0.031 Uiso calc R 1 H H11F 0.5698 0.3859 0.2933 0.031 Uiso calc R 1 H C12 0.8311(5) 0.5465(4) 0.5115(2) 0.0297(12) Uani d . 1 C H12A 0.8446 0.5176 0.5605 0.036 Uiso calc R 1 H H12B 0.7785 0.6117 0.5050 0.036 Uiso calc R 1 H H12C 0.9094 0.5669 0.5038 0.036 Uiso calc R 1 H C12' 0.6082(4) 0.7137(4) 0.1767(3) 0.0251(11) Uani d . 1 C H12D 0.6037 0.7479 0.1300 0.030 Uiso calc R 1 H H12E 0.6285 0.7702 0.2146 0.030 Uiso calc R 1 H H12F 0.5294 0.6805 0.1750 0.030 Uiso calc R 1 H C13 0.6359(4) 0.4427(4) 0.4543(3) 0.0296(12) Uani d . 1 C H13A 0.6001 0.3814 0.4221 0.036 Uiso calc R 1 H H13B 0.5915 0.5110 0.4366 0.036 Uiso calc R 1 H H13C 0.6304 0.4269 0.5031 0.036 Uiso calc R 1 H C13' 0.8348(4) 0.6770(4) 0.2100(3) 0.0268(11) Uani d . 1 C H13D 0.8960 0.6196 0.2117 0.032 Uiso calc R 1 H H13E 0.8530 0.7147 0.2567 0.032 Uiso calc R 1 H H13F 0.8363 0.7306 0.1722 0.032 Uiso calc R 1 H Cl 0.73957(13) 0.04994(11) 0.20830(7) 0.0328(3) Uani d . 1 Cl O1 0.6689(5) 0.0891(4) 0.1404(2) 0.0702(15) Uani d . 1 O O2 0.6659(5) -0.0086(5) 0.2437(3) 0.0785(17) Uani d . 1 O O3 0.8317(6) -0.0219(5) 0.1992(3) 0.094(2) Uani d . 1 O O4 0.7931(6) 0.1402(4) 0.2519(3) 0.0925(19) Uani d . 1 O loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' I I -0.4742 1.8119 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C2 N1 C8 112.2(4) ? C2 N1 C11 126.6(4) y C8 N1 C11 120.3(4) ? C2' N1' C8' 111.8(4) ? C2' N1' C11' 126.3(4) y C8' N1' C11' 121.7(4) ? N1 C2 C10 121.9(4) y N1 C2 C3 107.8(4) ? C10 C2 C3 130.2(4) ? N1' C2' C10 121.5(4) y N1' C2' C3' 107.9(4) ? C10 C2' C3' 130.5(4) ? C9 C3 C13 111.8(4) ? C9 C3 C2 101.6(4) ? C13 C3 C2 110.1(4) ? C9 C3 C12 108.1(4) ? C13 C3 C12 110.5(4) ? C2 C3 C12 114.4(4) ? C9' C3' C12' 108.6(4) ? C9' C3' C13' 112.0(4) ? C12' C3' C13' 110.1(4) ? C9' C3' C2' 101.1(3) ? C12' C3' C2' 112.9(4) ? C13' C3' C2' 111.9(4) ? C9 C4 C5 118.2(4) ? C9' C4' C5' 118.1(4) ? C6 C5 C4 121.7(4) ? C6 C5 I2 117.8(3) ? C4 C5 I2 120.4(3) ? C6' C5' C4' 121.5(4) ? C6' C5' I3 118.1(3) ? C4' C5' I3 120.3(3) ? C7 C6 C5 120.3(4) ? C5' C6' C7' 120.3(4) ? C8 C7 C6 117.4(4) ? C8' C7' C6' 116.8(4) ? C7 C8 C9 123.2(4) ? C7 C8 N1 127.9(4) ? C9 C8 N1 108.9(4) ? C7' C8' C9' 123.6(4) ? C7' C8' N1' 127.5(4) ? C9' C8' N1' 108.8(4) ? C4 C9 C8 119.2(4) ? C4 C9 C3 131.2(4) ? C8 C9 C3 109.5(4) ? C4' C9' C8' 119.6(4) ? C4' C9' C3' 130.9(4) ? C8' C9' C3' 109.5(4) ? C2 C10 C2' 124.5(4) y C2 C10 I1 118.6(3) y C2' C10 I1 116.8(3) y O4 Cl O1 109.5(3) ? O4 Cl O2 108.5(3) ? O1 Cl O2 110.6(3) ? O4 Cl O3 109.6(4) ? O1 Cl O3 110.0(3) ? O2 Cl O3 108.6(4) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag I1 C10 2.116(4) y I2 C5 2.097(4) y I3 C5' 2.101(5) y N1 C2 1.360(6) y N1 C8 1.409(6) ? N1 C11 1.452(5) y N1' C2' 1.351(6) y N1' C8' 1.418(6) ? N1' C11' 1.457(6) y C2 C10 1.392(6) y C2 C3 1.550(6) ? C2' C10 1.398(6) y C2' C3' 1.550(6) ? C3 C9 1.514(6) ? C3 C13 1.527(6) ? C3 C12 1.553(6) ? C3' C9' 1.518(6) ? C3' C12' 1.544(6) ? C3' C13' 1.546(6) ? C4 C9 1.376(6) ? C4 C5 1.393(6) ? C4' C9' 1.375(6) ? C4' C5' 1.394(6) ? C5 C6 1.386(6) ? C5' C6' 1.388(7) ? C6 C7 1.382(6) ? C6' C7' 1.394(7) ? C7 C8 1.374(6) ? C7' C8' 1.371(6) ? C8 C9 1.392(6) ? C8' C9' 1.382(6) ? Cl O4 1.410(5) ? Cl O1 1.415(4) ? Cl O2 1.415(5) ? Cl O3 1.415(5) ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C8 N1 C2 C10 -175.2(4) C11 N1 C2 C10 15.5(7) C8 N1 C2 C3 3.1(5) C11 N1 C2 C3 -166.2(4) C8' N1' C2' C10 -168.2(4) C11' N1' C2' C10 16.9(7) C8' N1' C2' C3' 9.1(5) C11' N1' C2' C3' -165.7(4) N1 C2 C3 C9 -2.1(4) C10 C2 C3 C9 176.0(4) N1 C2 C3 C13 -120.7(4) C10 C2 C3 C13 57.4(6) N1 C2 C3 C12 114.2(4) C10 C2 C3 C12 -67.8(6) N1' C2' C3' C9' -9.2(4) C10 C2' C3' C9' 167.8(5) N1' C2' C3' C12' 106.6(4) C10 C2' C3' C12' -76.4(6) N1' C2' C3' C13' -128.6(4) C10 C2' C3' C13' 48.4(6) C9 C4 C5 C6 -0.3(7) C9 C4 C5 I2 179.3(3) C9' C4' C5' C6' 1.5(7) C9' C4' C5' I3 -174.9(3) C4 C5 C6 C7 1.0(7) I2 C5 C6 C7 -178.6(3) C4' C5' C6' C7' -1.0(7) I3 C5' C6' C7' 175.5(3) C5 C6 C7 C8 -0.3(7) C5' C6' C7' C8' -0.1(7) C6 C7 C8 C9 -1.2(7) C6 C7 C8 N1 175.2(4) C2 N1 C8 C7 -179.7(4) C11 N1 C8 C7 -9.7(7) C2 N1 C8 C9 -2.9(5) C11 N1 C8 C9 167.2(4) C6' C7' C8' C9' 0.7(7) C6' C7' C8' N1' -178.5(4) C2' N1' C8' C7' 174.3(4) C11' N1' C8' C7' -10.6(7) C2' N1' C8' C9' -5.0(5) C11' N1' C8' C9' 170.1(4) C5 C4 C9 C8 -1.2(7) C5 C4 C9 C3 -176.6(4) C7 C8 C9 C4 2.0(7) N1 C8 C9 C4 -175.0(4) C7 C8 C9 C3 178.4(4) N1 C8 C9 C3 1.4(5) C13 C3 C9 C4 -66.5(6) C2 C3 C9 C4 176.2(5) C12 C3 C9 C4 55.5(6) C13 C3 C9 C8 117.8(4) C2 C3 C9 C8 0.4(5) C12 C3 C9 C8 -120.3(4) C5' C4' C9' C8' -0.9(7) C5' C4' C9' C3' 179.9(4) C7' C8' C9' C4' -0.2(7) N1' C8' C9' C4' 179.1(4) C7' C8' C9' C3' 179.2(4) N1' C8' C9' C3' -1.5(5) C12' C3' C9' C4' 66.7(6) C13' C3' C9' C4' -55.1(6) C2' C3' C9' C4' -174.4(5) C12' C3' C9' C8' -112.6(4) C13' C3' C9' C8' 125.7(4) C2' C3' C9' C8' 6.4(5) N1 C2 C10 C2' 28.2(7) C3 C2 C10 C2' -149.7(5) N1 C2 C10 I1 -149.7(3) C3 C2 C10 I1 32.5(6) N1' C2' C10 C2 35.0(7) C3' C2' C10 C2 -141.7(5) N1' C2' C10 I1 -147.1(3) C3' C2' C10 I1 36.2(6)