#------------------------------------------------------------------------------ #$Date: 2013-12-28 13:58:47 +0000 (Sat, 28 Dec 2013) $ #$Revision: 91933 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/69/2006910.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2006910 loop_ _publ_author_name 'Zhang, Jian-Heng' 'Chen, Xue-An' 'Li, Yan' 'Huang, Zhi-Tang' _publ_section_title ;4,9-Dihydroxy-4,9-dimethyl-4H,9H-1,2,5,6,6a,7,8-heptahydroimidazo[1,2,3-i,j][1,8]naphthyridinium Benzoate ; _journal_issue 1 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 140 _journal_page_last 142 _journal_volume 54 _journal_year 1998 _chemical_formula_iupac 'C12 H21 N2 O2 +,C7 H5 O2 -' _chemical_formula_moiety 'C12 H21 N2 O2 +,C7 H5 O2 -' _chemical_formula_sum 'C19 H26 N2 O4' _chemical_formula_weight 346.42 _chemical_name_systematic ; 4H,9H-4,9-dihydroxy-4,9-dimethyl-1,2,5,6,6a,7,8- heptahydroimidazo[1,2,3,-i,j][1,8]naphthyridinium benzoate ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _cell_angle_alpha 90.00 _cell_angle_beta 91.728(12) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 13.210(3) _cell_length_b 9.801(3) _cell_length_c 13.968(3) _cell_measurement_reflns_used 35 _cell_measurement_temperature 293 _cell_measurement_theta_max 15 _cell_measurement_theta_min 5 _cell_volume 1807.6(8) _computing_cell_refinement XSCANS _computing_data_collection 'XSCANS (Fait, 1991)' _computing_data_reduction XSCANS _computing_molecular_graphics 'ORTEPII (Johnson, 1976) and XP (Siemens, 1991)' _computing_publication_material SHELXL93 _computing_structure_refinement 'SHELXL93 (Sheldrick, 1993)' _computing_structure_solution 'SHELXS86 (Sheldrick, 1990)' _diffrn_measurement_device 'Siemens P4 four-circle' _diffrn_measurement_method \q-2\q _diffrn_radiation_type 'Mo K\a' _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0271 _diffrn_reflns_limit_h_max 15 _diffrn_reflns_limit_h_min -1 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min -1 _diffrn_reflns_limit_l_max 16 _diffrn_reflns_limit_l_min -16 _diffrn_reflns_number 4095 _diffrn_reflns_theta_max 25.00 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 97 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.089 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.273 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 744 _exptl_crystal_size_max 0.40 _exptl_crystal_size_mid 0.35 _exptl_crystal_size_min 0.20 _refine_diff_density_max 0.180 _refine_diff_density_min -0.139 _refine_ls_extinction_coef 0.0226(18) _refine_ls_extinction_method SHELXL93 _refine_ls_goodness_of_fit_all 0.919 _refine_ls_hydrogen_treatment refU _refine_ls_number_parameters 232 _refine_ls_number_reflns 3188 _refine_ls_R_factor_obs .0441 _refine_ls_shift/esd_max -0.001 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.0571P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_all 0.1110 _reflns_number_observed 1906 _reflns_number_total 3188 _reflns_observed_criterion I>2sigma(I) _[local]_cod_data_source_file de1059.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'P 21/n' _cod_original_cell_volume 1807.7(7) _cod_database_code 2006910 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_group _atom_site_type_symbol O(1) .50899(11) .0241(2) .63311(11) .0713(5) Uani d . 1 . O H(O1) .47545(11) .0861(2) .65554(11) .133(10) Uiso calc R 1 . H O(2) .32291(11) .0618(2) .98743(10) .0644(4) Uani d . 1 . O H(O2) .32850(11) .1214(2) .94678(10) .133(10) Uiso calc R 1 . H O(3) .41551(11) .2747(2) .90726(11) .0684(5) Uani d . 1 . O O(4) .42953(11) .1807(2) .76524(12) .0766(5) Uani d . 1 . O N(1) .35895(11) -.1066(2) .87333(11) .0496(4) Uani d . 1 . N N(2) .43291(12) -.1314(2) .73580(11) .0515(4) Uani d . 1 . N C(1) .4617(2) -.1521(3) .9006(2) .0766(8) Uani d . 1 . C H(1A) .4606(2) -.2418(3) .9298(2) .077(2) Uiso calc R 1 . H H(1B) .4943(2) -.0884(3) .9448(2) .077(2) Uiso calc R 1 . H C(2) .5146(2) -.1555(3) .80716(15) .0737(7) Uani d . 1 . C H(2A) .5657(2) -.0847(3) .80463(15) .077(2) Uiso calc R 1 . H H(2B) .5463(2) -.2434(3) .79727(15) .077(2) Uiso calc R 1 . H C(3) .5190(2) -.2068(3) .5926(2) .0877(8) Uani d . 1 . C H(3A) .4838(2) -.2925(3) .5922(2) .104(4) Uiso calc R 1 . H H(3B) .5804(2) -.2149(3) .6306(2) .104(4) Uiso calc R 1 . H H(3C) .5348(2) -.1822(3) .5283(2) .104(4) Uiso calc R 1 . H C(4) .4528(2) -.0983(2) .63472(15) .0606(6) Uani d . 1 . C C(5) .3519(2) -.0847(2) .58045(14) .0658(6) Uani d . 1 . C H(5A) .3223(2) -.1746(2) .57190(14) .077(2) Uiso calc R 1 . H H(5B) .3635(2) -.0473(2) .51744(14) .077(2) Uiso calc R 1 . H C(6) .2776(2) .0061(2) .63142(14) .0623(6) Uani d . 1 . C H(6A) .2153(2) .0134(2) .59327(14) .077(2) Uiso calc R 1 . H H(6B) .3060(2) .0968(2) .63913(14) .077(2) Uiso calc R 1 . H C(7) .25520(14) -.0532(2) .72901(13) .0482(5) Uani d . 1 . C H(7) .21576(14) -.1366(2) .71732(13) .054(5) Uiso calc R 1 . H C(8) .34961(13) -.0950(2) .77973(13) .0425(5) Uani d . 1 . C C(9) .19393(15) .0351(2) .79517(15) .0587(6) Uani d . 1 . C H(9A) .12717(15) .0512(2) .76660(15) .077(2) Uiso calc R 1 . H H(9B) .22715(15) .1226(2) .80440(15) .077(2) Uiso calc R 1 . H C(10) .18418(15) -.0361(2) .89135(15) .0605(6) Uani d . 1 . C H(10A) .14100(15) .0182(2) .93141(15) .077(2) Uiso calc R 1 . H H(10B) .15155(15) -.1238(2) .88109(15) .077(2) Uiso calc R 1 . H C(11) .2773(2) -.1621(2) 1.0227(2) .0731(7) Uani d . 1 . C H(11A) .2518(2) -.2463(2) .9965(2) .104(4) Uiso calc R 1 . H H(11B) .2320(2) -.1290(2) 1.0699(2) .104(4) Uiso calc R 1 . H H(11C) .3431(2) -.1770(2) 1.0520(2) .104(4) Uiso calc R 1 . H C(12) .28525(15) -.0583(2) .94370(14) .0524(5) Uani d . 1 . C C(13) .4582(2) .2621(2) .8294(2) .0510(5) Uani d . 1 . C C(14) .54745(14) .3531(2) .81057(14) .0483(5) Uani d . 1 . C C(15) .6029(2) .3393(2) .7291(2) .0664(6) Uani d . 1 . C H(15) .5830(2) .2752(2) .6832(2) .083(3) Uiso calc R 1 . H C(16) .6869(2) .4182(3) .7144(2) .0868(8) Uani d . 1 . C H(16) .7238(2) .4066(3) .6593(2) .083(3) Uiso calc R 1 . H C(17) .7162(2) .5138(3) .7809(2) .0883(8) Uani d . 1 . C H(17) .7733(2) .5669(3) .7711(2) .083(3) Uiso calc R 1 . H C(18) .6617(2) .5316(3) .8619(2) .0785(8) Uani d . 1 . C H(18) .6812(2) .5976(3) .9066(2) .083(3) Uiso calc R 1 . H C(19) .5777(2) .4512(2) .8769(2) .0615(6) Uani d . 1 . C H(19) .5410(2) .4631(2) .9321(2) .083(3) Uiso calc R 1 . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O(1) .0659(10) .0744(11) .0748(10) -.0205(9) .0198(8) -.0051(9) O(2) .0740(10) .0658(10) .0538(8) -.0162(8) .0070(7) -.0055(8) O(3) .0655(10) .0779(11) .0621(9) -.0106(8) .0060(8) .0063(8) O(4) .0648(10) .0762(11) .0889(11) -.0190(9) .0071(8) -.0266(10) N(1) .0404(9) .0618(11) .0464(10) .0043(8) -.0028(7) .0042(8) N(2) .0428(9) .0589(11) .0529(10) .0017(9) .0025(8) .0007(9) C(1) .0550(14) .108(2) .0662(14) .0184(15) -.0125(12) .0074(15) C(2) .0460(12) .096(2) .079(2) .0153(13) -.0010(12) .0095(14) C(3) .089(2) .083(2) .093(2) -.004(2) .034(2) -.016(2) C(4) .0630(14) .0634(15) .0560(13) -.0119(13) .0138(11) -.0056(11) C(5) .079(2) .069(2) .0496(12) -.0178(14) -.0002(12) -.0022(11) C(6) .0632(14) .0645(15) .0578(14) -.0090(13) -.0185(11) .0097(12) C(7) .0408(11) .0473(12) .0560(12) -.0033(10) -.0090(9) .0021(10) C(8) .0383(11) .0398(11) .0491(11) -.0044(9) -.0020(9) .0004(9) C(9) .0418(11) .0562(13) .0774(15) .0095(11) -.0075(10) -.0013(12) C(10) .0470(12) .0624(14) .0727(14) -.0004(11) .0116(11) -.0056(12) C(11) .090(2) .068(2) .0623(14) -.0126(14) .0125(13) .0065(12) C(12) .0510(12) .0547(13) .0519(12) -.0066(11) .0074(10) .0001(11) C(13) .0440(12) .0479(13) .0606(13) .0053(11) -.0041(10) .0031(11) C(14) .0414(11) .0437(12) .0592(13) .0026(10) -.0063(10) .0068(10) C(15) .0602(14) .0610(15) .078(2) -.0037(12) .0090(13) -.0037(13) C(16) .071(2) .081(2) .110(2) -.013(2) .029(2) .000(2) C(17) .061(2) .076(2) .128(2) -.0197(15) .003(2) .011(2) C(18) .081(2) .060(2) .093(2) -.0170(15) -.030(2) .0051(15) C(19) .0642(14) .0569(14) .0627(14) -.0043(12) -.0102(11) .0029(12) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag O(1) C(4) . 1.411(3) no O(2) C(12) . 1.410(2) no O(3) C(13) . 1.246(2) yes O(4) C(13) . 1.250(2) yes N(1) C(8) . 1.314(2) yes N(1) C(1) . 1.468(2) yes N(1) C(12) . 1.482(2) yes N(2) C(8) . 1.325(2) yes N(2) C(2) . 1.466(2) yes N(2) C(4) . 1.480(2) yes C(1) C(2) . 1.499(3) no C(3) C(4) . 1.507(3) no C(4) C(5) . 1.519(3) no C(5) C(6) . 1.518(3) no C(6) C(7) . 1.519(3) no C(7) C(8) . 1.474(2) yes C(7) C(9) . 1.517(3) no C(9) C(10) . 1.523(3) no C(10) C(12) . 1.518(3) no C(11) C(12) . 1.507(3) no C(13) C(14) . 1.508(3) no C(14) C(15) . 1.379(3) yes C(14) C(19) . 1.385(3) yes C(15) C(16) . 1.373(3) yes C(16) C(17) . 1.367(4) yes C(17) C(18) . 1.370(3) yes C(18) C(19) . 1.383(3) yes loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C(8) N(1) C(1) 110.0(2) yes C(8) N(1) C(12) 126.0(2) yes C(1) N(1) C(12) 123.1(2) yes C(8) N(2) C(2) 109.4(2) yes C(8) N(2) C(4) 123.8(2) yes C(2) N(2) C(4) 122.4(2) yes N(1) C(1) C(2) 103.4(2) no N(2) C(2) C(1) 103.6(2) no O(1) C(4) N(2) 108.1(2) no O(1) C(4) C(3) 106.4(2) no N(2) C(4) C(3) 109.8(2) no O(1) C(4) C(5) 111.8(2) no N(2) C(4) C(5) 108.5(2) no C(3) C(4) C(5) 112.2(2) no C(4) C(5) C(6) 112.8(2) no C(5) C(6) C(7) 110.1(2) no C(8) C(7) C(9) 109.0(2) no C(8) C(7) C(6) 110.6(2) no C(9) C(7) C(6) 116.8(2) no N(1) C(8) N(2) 112.5(2) yes N(1) C(8) C(7) 123.7(2) yes N(2) C(8) C(7) 123.7(2) yes C(7) C(9) C(10) 109.7(2) no C(12) C(10) C(9) 113.2(2) no O(2) C(12) N(1) 108.9(2) no O(2) C(12) C(11) 106.1(2) no N(1) C(12) C(11) 109.4(2) no O(2) C(12) C(10) 112.5(2) no N(1) C(12) C(10) 108.2(2) no C(11) C(12) C(10) 111.7(2) no O(3) C(13) O(4) 123.6(2) no O(3) C(13) C(14) 118.1(2) no O(4) C(13) C(14) 118.3(2) no C(15) C(14) C(19) 118.1(2) yes C(15) C(14) C(13) 121.6(2) no C(19) C(14) C(13) 120.3(2) no C(16) C(15) C(14) 121.3(2) yes C(17) C(16) C(15) 119.9(3) yes C(16) C(17) C(18) 120.2(2) yes C(17) C(18) C(19) 119.8(2) yes C(18) C(19) C(14) 120.7(2) yes loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O(1) H(O1) O(4) . 0.820 1.906(2) 2.642(2) 149.00(10) O(2) H(O2) O(3) . 0.820 1.980(2) 2.681(2) 143.1(2) C(1) H(1A) O(3) 3_657 0.970 2.781(3) 3.319(3) 115.7(3) C(1) H(1B) O(2) 3_657 0.970 2.579(3) 3.325(3) 133.8(3) C(7) H(7) O(3) 2_546 0.980 2.571(2) 3.361(2) 137.7(3) C(7) H(7) O(4) 2_546 0.980 2.642(3) 3.574(3) 159.0(2) _journal_paper_doi 10.1107/S0108270197009529