#------------------------------------------------------------------------------ #$Date: 2011-09-10 04:16:28 +0100 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2007093.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2007093 loop_ _publ_author_name 'Warda, S. A.' _publ_section_title ; Polymeric \m,\m'-Pyrazine-N,N'-bis(N-salicylidene-R,S-alaninato)copper(II) Tetrahydrate ; _journal_issue 3 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 302 _journal_page_last 304 _journal_volume 54 _journal_year 1998 _chemical_formula_iupac '[Cu2 (C10 H9 N O3)2 (C4 H4 N2)] , 4H2 O' _chemical_formula_sum 'C12 H15 Cu N2 O5' _chemical_formula_weight 330.80 _chemical_name_systematic ; \m, \m'-Pyrazine-bis(N-salicylidene-R,S-alaninato-copper(II)) tetrahydrate ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _audit_creation_method SHELXL-97 _cell_angle_alpha 70.474(8) _cell_angle_beta 81.000(8) _cell_angle_gamma 89.478(8) _cell_formula_units_Z 2 _cell_length_a 7.7750(5) _cell_length_b 8.1044(7) _cell_length_c 11.6240(9) _cell_measurement_reflns_used 5000 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 28.00 _cell_measurement_theta_min 2.67 _cell_volume 681.09(10) _computing_cell_refinement 'IPDS software' _computing_data_collection 'IPDS software (Stoe & Cie, 1997)' _computing_data_reduction 'IPDS software' _computing_molecular_graphics 'XP in SHELXTL (Siemens, 1996b)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1990)' _diffrn_ambient_temperature 293(2) _diffrn_detector_area_resol_mean 60 _diffrn_measured_fraction_theta_full 0.920 _diffrn_measured_fraction_theta_max 0.920 _diffrn_measurement_device_type 'Stoe IPDS' _diffrn_measurement_method 'Image plate' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0451 _diffrn_reflns_av_sigmaI/netI 0.0531 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 10 _diffrn_reflns_limit_k_min -10 _diffrn_reflns_limit_l_max 15 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_number 8132 _diffrn_reflns_theta_full 28.00 _diffrn_reflns_theta_max 28.00 _diffrn_reflns_theta_min 2.67 _diffrn_standards_decay_% 0 _exptl_absorpt_coefficient_mu 1.624 _exptl_absorpt_correction_T_max 0.940 _exptl_absorpt_correction_T_min 0.652 _exptl_absorpt_correction_type 'Integration (XPREP SHELXTL; Siemens, 1996a)' _exptl_crystal_colour 'Clear green' _exptl_crystal_density_diffrn 1.613 _exptl_crystal_density_method 'not measured' _exptl_crystal_description Plate _exptl_crystal_F_000 340 _exptl_crystal_size_max 0.30 _exptl_crystal_size_mid 0.20 _exptl_crystal_size_min 0.04 _refine_diff_density_max 0.859 _refine_diff_density_min -0.363 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.017 _refine_ls_matrix_type full _refine_ls_number_parameters 193 _refine_ls_number_reflns 3033 _refine_ls_number_restraints 4 _refine_ls_restrained_S_all 1.016 _refine_ls_R_factor_gt 0.0366 _refine_ls_shift/su_max <0.001 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_scheme 'calc w = 1/[\s^2^(Fo^2^)+(0.0386P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_wR_factor_ref 0.0821 _reflns_number_gt 2186 _reflns_number_total 3033 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file jz1252.cif _[local]_cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 681.09(9) _cod_database_code 2007093 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol Cu 0.57385(4) 0.34553(4) 0.10806(3) 0.03337(12) Uani d . 1 Cu O1 0.5307(2) 0.3637(2) -0.05305(15) 0.0324(4) Uani d . 1 O N1 0.3716(3) 0.1928(3) 0.19297(19) 0.0365(5) Uani d . 1 N C1 0.4331(3) 0.2488(3) -0.0764(2) 0.0296(5) Uani d . 1 C O2 0.6085(3) 0.3219(3) 0.27336(16) 0.0429(5) Uani d . 1 O N2 0.8265(3) 0.4422(3) 0.04212(18) 0.0305(5) Uani d . 1 N C2 0.4441(4) 0.2534(4) -0.1989(2) 0.0376(6) Uani d . 1 C H2 0.5211 0.3346 -0.2608 0.045 Uiso calc R 1 H C3 0.3435(4) 0.1403(4) -0.2302(3) 0.0426(7) Uani d . 1 C H3 0.3522 0.1475 -0.3124 0.051 Uiso calc R 1 H O3 0.4733(3) 0.2516(3) 0.46613(18) 0.0612(6) Uani d . 1 O C4 0.2298(4) 0.0162(4) -0.1395(3) 0.0436(7) Uani d . 1 C H4 0.1621 -0.0599 -0.1605 0.052 Uiso calc R 1 H O4 0.9349(4) 0.3167(5) -0.3191(3) 0.0902(10) Uani d D 1 O H42 0.859(5) 0.360(6) -0.371(4) 0.108 Uiso d D 1 H H41 1.018(5) 0.403(5) -0.351(4) 0.108 Uiso d D 1 H C5 0.2179(4) 0.0067(4) -0.0189(3) 0.0376(6) Uani d . 1 C H5 0.1428 -0.0781 0.0418 0.045 Uiso calc R 1 H O5 0.7444(4) 0.4801(4) 0.4800(3) 0.0702(7) Uani d D 1 O H52 0.681(5) 0.400(4) 0.467(4) 0.084 Uiso d D 1 H H51 0.687(5) 0.575(4) 0.483(4) 0.084 Uiso d D 1 H C6 0.3165(3) 0.1222(3) 0.0158(2) 0.0311(6) Uani d . 1 C C7 0.2905(4) 0.1011(4) 0.1453(2) 0.0362(6) Uani d . 1 C H7 0.2092 0.0149 0.1982 0.043 Uiso calc R 1 H C8 0.3372(5) 0.1539(5) 0.3282(3) 0.0568(9) Uani d . 1 C H8 0.3516 0.0281 0.3665 0.068 Uiso calc R 1 H C9 0.4824(4) 0.2496(4) 0.3595(2) 0.0412(7) Uani d . 1 C C10 0.1617(6) 0.1890(9) 0.3767(4) 0.1083(19) Uani d . 1 C H10A 0.0783 0.1244 0.3536 0.162 Uiso calc R 1 H H10B 0.1436 0.3121 0.3432 0.162 Uiso calc R 1 H H10C 0.1476 0.1537 0.4652 0.162 Uiso calc R 1 H C11 0.9067(3) 0.4483(3) -0.0696(2) 0.0337(6) Uani d . 1 C H11 0.8447 0.4134 -0.1204 0.040 Uiso calc R 1 H C12 0.9214(3) 0.4950(4) 0.1115(2) 0.0349(6) Uani d . 1 C H12 0.8698 0.4933 0.1897 0.042 Uiso calc R 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Cu 0.02837(19) 0.0435(2) 0.02586(16) -0.00882(14) -0.00179(12) -0.00949(12) O1 0.0291(10) 0.0369(9) 0.0282(8) -0.0092(8) -0.0020(8) -0.0080(7) N1 0.0316(13) 0.0487(13) 0.0264(10) -0.0066(11) 0.0002(10) -0.0109(10) C1 0.0250(14) 0.0335(13) 0.0305(12) 0.0020(11) -0.0040(11) -0.0112(10) O2 0.0385(12) 0.0596(12) 0.0278(9) -0.0134(10) -0.0031(9) -0.0116(9) N2 0.0268(12) 0.0336(11) 0.0292(10) -0.0025(10) -0.0032(9) -0.0088(9) C2 0.0387(16) 0.0418(15) 0.0317(13) -0.0005(13) -0.0025(12) -0.0128(11) C3 0.0502(19) 0.0466(16) 0.0368(14) 0.0050(15) -0.0121(14) -0.0195(13) O3 0.0612(15) 0.0949(17) 0.0283(10) -0.0191(14) 0.0020(10) -0.0252(11) C4 0.0444(18) 0.0452(16) 0.0503(17) -0.0015(14) -0.0135(15) -0.0251(14) O4 0.068(2) 0.125(3) 0.0649(18) -0.0008(19) -0.0138(16) -0.0145(18) C5 0.0302(15) 0.0368(14) 0.0438(15) -0.0047(12) -0.0035(12) -0.0117(12) O5 0.0573(17) 0.0828(19) 0.0798(18) -0.0029(15) -0.0234(14) -0.0340(16) C6 0.0251(14) 0.0348(13) 0.0322(12) 0.0005(11) -0.0047(11) -0.0097(10) C7 0.0280(15) 0.0427(15) 0.0323(13) -0.0082(13) -0.0010(12) -0.0066(11) C8 0.051(2) 0.085(2) 0.0284(14) -0.0231(19) 0.0051(14) -0.0157(15) C9 0.0389(17) 0.0532(17) 0.0312(14) -0.0045(15) -0.0037(13) -0.0145(12) C10 0.056(3) 0.209(6) 0.072(3) -0.033(3) 0.018(2) -0.074(3) C11 0.0309(15) 0.0391(14) 0.0319(13) -0.0039(12) -0.0048(11) -0.0129(11) C12 0.0294(15) 0.0446(15) 0.0317(13) -0.0065(12) -0.0029(11) -0.0147(11) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cu Cu 0.3201 1.2651 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag O1 Cu N1 . . 94.19(8) y O1 Cu O2 . . 177.67(8) y N1 Cu O2 . . 83.50(9) y O1 Cu N2 . . 92.51(8) y N1 Cu N2 . . 162.91(8) y O2 Cu N2 . . 89.79(8) y O1 Cu O1 . 2_665 82.79(7) y N1 Cu O1 . 2_665 105.32(8) y O2 Cu O1 . 2_665 97.56(7) y N2 Cu O1 . 2_665 91.10(7) y C1 O1 Cu . . 124.40(15) ? C1 O1 Cu . 2_665 114.48(13) ? Cu O1 Cu . 2_665 97.21(7) ? C7 N1 C8 . . 119.3(3) ? C7 N1 Cu . . 124.58(19) ? C8 N1 Cu . . 114.7(2) ? O1 C1 C2 . . 118.6(2) ? O1 C1 C6 . . 123.5(2) ? C2 C1 C6 . . 117.8(2) ? C9 O2 Cu . . 116.11(18) ? C11 N2 C12 . . 116.7(2) ? C11 N2 Cu . . 121.66(18) ? C12 N2 Cu . . 121.54(18) ? C3 C2 C1 . . 121.7(3) ? C3 C2 H2 . . 119.2 ? C1 C2 H2 . . 119.2 ? C2 C3 C4 . . 120.3(3) ? C2 C3 H3 . . 119.8 ? C4 C3 H3 . . 119.8 ? C5 C4 C3 . . 119.4(3) ? C5 C4 H4 . . 120.3 ? C3 C4 H4 . . 120.3 ? H42 O4 H41 . . 99(4) ? C4 C5 C6 . . 121.7(3) ? C4 C5 H5 . . 119.2 ? C6 C5 H5 . . 119.2 ? H52 O5 H51 . . 115(4) ? C5 C6 C1 . . 119.1(2) ? C5 C6 C7 . . 116.5(2) ? C1 C6 C7 . . 124.5(2) ? N1 C7 C6 . . 124.6(3) ? N1 C7 H7 . . 117.7 ? C6 C7 H7 . . 117.7 ? C10 C8 N1 . . 114.6(3) ? C10 C8 C9 . . 114.4(3) ? N1 C8 C9 . . 106.8(2) ? C10 C8 H8 . . 106.9 ? N1 C8 H8 . . 106.9 ? C9 C8 H8 . . 106.9 ? O3 C9 O2 . . 123.3(3) ? O3 C9 C8 . . 119.1(3) ? O2 C9 C8 . . 117.6(2) ? C8 C10 H10A . . 109.5 ? C8 C10 H10B . . 109.5 ? H10A C10 H10B . . 109.5 ? C8 C10 H10C . . 109.5 ? H10A C10 H10C . . 109.5 ? H10B C10 H10C . . 109.5 ? N2 C11 C12 . 2_765 121.7(2) ? N2 C11 H11 . . 119.1 ? C12 C11 H11 2_765 . 119.1 ? N2 C12 C11 . 2_765 121.5(2) ? N2 C12 H12 . . 119.2 ? C11 C12 H12 2_765 . 119.2 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Cu O1 . 1.9113(17) y Cu N1 . 1.927(2) y Cu O2 . 1.9277(18) y Cu N2 . 2.053(2) y Cu O1 2_665 2.3961(17) y O1 C1 . 1.328(3) ? O1 Cu 2_665 2.3961(17) ? N1 C7 . 1.285(4) ? N1 C8 . 1.477(3) ? C1 C2 . 1.401(3) ? C1 C6 . 1.415(4) ? O2 C9 . 1.272(3) ? N2 C11 . 1.335(3) ? N2 C12 . 1.342(3) ? C2 C3 . 1.381(4) ? C2 H2 . 0.9300 ? C3 C4 . 1.386(4) ? C3 H3 . 0.9300 ? O3 C9 . 1.236(3) ? C4 C5 . 1.366(4) ? C4 H4 . 0.9300 ? O4 H42 . 0.892(10) ? O4 H41 . 0.895(10) ? C5 C6 . 1.411(4) ? C5 H5 . 0.9300 ? O5 H52 . 0.893(10) ? O5 H51 . 0.896(10) ? C6 C7 . 1.438(4) ? C7 H7 . 0.9300 ? C8 C10 . 1.455(5) ? C8 C9 . 1.530(5) ? C8 H8 . 0.9800 ? C10 H10A . 0.9600 ? C10 H10B . 0.9600 ? C10 H10C . 0.9600 ? C11 C12 2_765 1.375(4) ? C11 H11 . 0.9300 ? C12 C11 2_765 1.375(4) ? C12 H12 . 0.9300 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag O4 H41 O5 2_765 0.90(4) 2.19(4) 2.997(4) 150(4) yes O4 H42 O5 1_554 0.90(4) 2.02(4) 2.895(4) 165(4) yes O5 H51 O3 2_666 0.90(4) 2.04(4) 2.914(4) 165(4) yes O5 H52 O3 1_555 0.90(4) 2.02(4) 2.877(5) 160(4) yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_4 _geom_torsion N1 Cu O1 C1 . . -21.42(19) O2 Cu O1 C1 . . -27(2) N2 Cu O1 C1 . . 142.85(18) O1 Cu O1 C1 2_665 . -126.4(2) N1 Cu O1 Cu . 2_665 104.94(8) O2 Cu O1 Cu . 2_665 99(2) N2 Cu O1 Cu . 2_665 -90.79(7) O1 Cu O1 Cu 2_665 2_665 0.0 O1 Cu N1 C7 . . 20.0(2) O2 Cu N1 C7 . . -160.3(2) N2 Cu N1 C7 . . -92.8(3) O1 Cu N1 C7 2_665 . 103.6(2) O1 Cu N1 C8 . . -173.9(2) O2 Cu N1 C8 . . 5.9(2) N2 Cu N1 C8 . . 73.3(4) O1 Cu N1 C8 2_665 . -90.2(2) Cu O1 C1 C2 . . -165.17(17) Cu O1 C1 C2 2_665 . 76.2(2) Cu O1 C1 C6 . . 15.5(3) Cu O1 C1 C6 2_665 . -103.1(2) O1 Cu O2 C9 . . -5(2) N1 Cu O2 C9 . . -10.8(2) N2 Cu O2 C9 . . -175.1(2) O1 Cu O2 C9 2_665 . 93.8(2) O1 Cu N2 C11 . . -16.57(19) N1 Cu N2 C11 . . 96.5(3) O2 Cu N2 C11 . . 163.04(19) O1 Cu N2 C11 2_665 . -99.40(18) O1 Cu N2 C12 . . 166.43(19) N1 Cu N2 C12 . . -80.5(4) O2 Cu N2 C12 . . -13.96(19) O1 Cu N2 C12 2_665 . 83.60(19) O1 C1 C2 C3 . . -178.5(2) C6 C1 C2 C3 . . 0.9(4) C1 C2 C3 C4 . . -1.0(4) C2 C3 C4 C5 . . 0.0(4) C3 C4 C5 C6 . . 1.1(4) C4 C5 C6 C1 . . -1.2(4) C4 C5 C6 C7 . . 179.0(2) O1 C1 C6 C5 . . 179.6(2) C2 C1 C6 C5 . . 0.2(3) O1 C1 C6 C7 . . -0.6(4) C2 C1 C6 C7 . . -180.0(2) C8 N1 C7 C6 . . -177.9(3) Cu N1 C7 C6 . . -12.3(4) C5 C6 C7 N1 . . 178.7(2) C1 C6 C7 N1 . . -1.0(4) C7 N1 C8 C10 . . -66.3(5) Cu N1 C8 C10 . . 126.7(4) C7 N1 C8 C9 . . 165.9(2) Cu N1 C8 C9 . . -1.0(3) Cu O2 C9 O3 . . -167.5(2) Cu O2 C9 C8 . . 13.3(3) C10 C8 C9 O3 . . 45.0(5) N1 C8 C9 O3 . . 172.9(3) C10 C8 C9 O2 . . -135.7(4) N1 C8 C9 O2 . . -7.9(4) C12 N2 C11 C12 . 2_765 0.4(4) Cu N2 C11 C12 . 2_765 -176.75(19) C11 N2 C12 C11 . 2_765 -0.4(4) Cu N2 C12 C11 . 2_765 176.75(19)