#------------------------------------------------------------------------------ #$Date: 2015-01-23 12:30:19 +0000 (Fri, 23 Jan 2015) $ #$Revision: 130086 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/71/2007179.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2007179 loop_ _publ_author_name 'Warda, Salam A.' _publ_section_title ;An Exact Quasi-Ferrodistortive Ordering in (N,N'-Di-n-butylthiourea-S)(N-salicylideneglycinato-O,N,O')copper(II) ; _journal_issue 4 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 460 _journal_page_last 462 _journal_paper_doi 10.1107/S0108270197016582 _journal_volume 54 _journal_year 1998 _chemical_formula_iupac '[Cu(C9 H7 NO3)(C9 H20 N2 S)]' _chemical_formula_sum 'C18 H27 Cu N3 O3 S' _chemical_formula_weight 429.03 _chemical_name_systematic ; N,N'-dibutylthiourea-(N-salicylideneglycinato)copper(II) ; _space_group_IT_number 78 _symmetry_cell_setting tetragonal _symmetry_space_group_name_Hall 'P 4cw' _symmetry_space_group_name_H-M 'P 43' _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 12.1747(16) _cell_length_b 12.1747(16) _cell_length_c 13.791(2) _cell_measurement_reflns_used 5000 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 25.97 _cell_measurement_theta_min 2.23 _cell_volume 2044.1(5) _computing_cell_refinement 'CELL (Stoe, 1997a)' _computing_data_collection 'EXPOSE (Stoe, 1997b)' _computing_data_reduction 'INTEGRATE (Stoe, 1997c)' _computing_molecular_graphics 'XP in SHELXTL (Siemens, 1996b)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1990)' _diffrn_ambient_temperature 293(2) _diffrn_detector_area_resol_mean 70 _diffrn_measured_fraction_theta_full 0.952 _diffrn_measured_fraction_theta_max 0.952 _diffrn_measurement_device_type 'Stoe IPDS' _diffrn_measurement_method 'Image plate, Stoe IPDS' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0576 _diffrn_reflns_av_sigmaI/netI 0.0511 _diffrn_reflns_limit_h_max 14 _diffrn_reflns_limit_h_min -14 _diffrn_reflns_limit_k_max 14 _diffrn_reflns_limit_k_min -14 _diffrn_reflns_limit_l_max 15 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_number 16171 _diffrn_reflns_theta_full 25.97 _diffrn_reflns_theta_max 25.97 _diffrn_reflns_theta_min 2.23 _diffrn_standards_decay_% 0 _exptl_absorpt_coefficient_mu 1.192 _exptl_absorpt_correction_T_max 0.875 _exptl_absorpt_correction_T_min 0.425 _exptl_absorpt_correction_type 'Integration (XPREP; Siemens, 1996a)' _exptl_crystal_colour Violet _exptl_crystal_density_diffrn 1.394 _exptl_crystal_density_meas ? _exptl_crystal_density_method 'not measured' _exptl_crystal_description Needle _exptl_crystal_F_000 900 _exptl_crystal_size_max 0.87 _exptl_crystal_size_mid 0.15 _exptl_crystal_size_min 0.12 _refine_diff_density_max 0.279 _refine_diff_density_min -0.276 _refine_ls_abs_structure_details 'Flack (1983) parameter = 0.000(13); 1799 Friedel pairs' _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.018 _refine_ls_hydrogen_treatment H_atoms:_see_below _refine_ls_matrix_type full _refine_ls_number_parameters 241 _refine_ls_number_reflns 3788 _refine_ls_number_restraints 2 _refine_ls_restrained_S_all 1.018 _refine_ls_R_factor_all 0.0545 _refine_ls_R_factor_gt 0.0350 _refine_ls_shift/su_max '< 0.001' _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_scheme 'calc w=1/[\s^2^(Fo^2^)+(0.0362P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_wR_factor_ref 0.0803 _reflns_number_gt 2729 _reflns_number_total 3788 _reflns_threshold_expression >2\s(I) _[local]_cod_data_source_file jz1262.cif _[local]_cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Tetragonal' changed to 'tetragonal' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_exptl_crystal_density_meas' value 'not measured' was changed to '?' - the value is perceived as not measured. Automatic conversion script Id: cif_fix_values 3008 2015-01-20 13:52:24Z robertas ; _cod_original_cell_volume 2044.2(5) _cod_database_code 2007179 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, z+1/2' '-y, x, z+3/4' 'y, -x, z+1/4' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol Cu .87075(4) .08498(4) .00084(4) .05763(14) Uani d . 1 . . Cu S .82208(8) .26332(8) -.02520(9) .0653(3) Uani d . 1 . . S O1 1.0250(2) .0949(2) .0017(3) .0660(7) Uani d . 1 . . O N1 .8718(2) -.0728(2) -.0070(3) .0559(8) Uani d . 1 . . N C1 1.0974(3) .0143(3) -.0064(3) .0569(9) Uani d . 1 . . C O2 .7199(2) .0645(2) .0423(2) .0728(9) Uani d . 1 . . O N2 1.0327(3) .3166(2) -.0232(3) .0680(10) Uani d D 1 . . N H21 1.042(3) .2466(16) -.004(4) .082 Uiso d D 1 . . H C2 1.2089(3) .0407(3) -.0154(3) .0650(12) Uani d . 1 . . C H2 1.2181 .1325 -.0319 .078 Uiso d R 1 . . H N3 .9157(3) .4493(2) -.0802(3) .0658(9) Uani d D 1 . . N H31 .970(3) .494(3) -.100(3) .079 Uiso d D 1 . . H O3 .5956(3) -.0655(2) .0750(3) .0924(11) Uani d . 1 . . O C3 1.2889(4) -.0380(4) -.0229(4) .0773(15) Uani d . 1 . . C H3 1.3775 -.0227 -.0402 .093 Uiso d R 1 . . H C4 1.2595(4) -.1491(4) -.0204(4) .0850(15) Uani d . 1 . . C H4 1.3187 -.2045 -.0177 .102 Uiso d R 1 . . H C5 1.1525(3) -.1785(3) -.0113(4) .0707(12) Uani d . 1 . . C H5 1.1137 -.2752 -.0068 .085 Uiso d R 1 . . H C6 1.0683(3) -.0981(3) -.0070(3) .0576(10) Uani d . 1 . . C C7 .9570(3) -.1364(3) -.0051(3) .0583(9) Uani d . 1 . . C H7 .9418 -.2311 .0001 .070 Uiso d R 1 . . H C8 .7620(3) -.1189(3) -.0026(4) .0624(10) Uani d . 1 . . C H8A .7650 -.1797 .0374 .075 Uiso d R 1 . . H H8B .7304 -.1481 -.0765 .075 Uiso d R 1 . . H C9 .6849(3) -.0360(3) .0428(3) .0664(12) Uani d . 1 . . C C10 .9328(3) .3491(3) -.0450(3) .0587(10) Uani d . 1 . . C C11 1.1314(3) .3835(4) -.0302(4) .0762(15) Uani d . 1 . . C H11A 1.1257 .4311 -.0864 .091 Uiso calc R 1 . . H H11B 1.1945 .3361 -.0394 .091 Uiso calc R 1 . . H C12 1.1482(5) .4517(5) .0580(5) .115(2) Uani d . 1 . . C H12A 1.1441 .4056 .1153 .138 Uiso calc R 1 . . H H12B 1.0906 .5065 .0624 .138 Uiso calc R 1 . . H C13 1.2601(6) .5086(6) .0543(6) .145(3) Uani d . 1 . . C H13A 1.3157 .4546 .0379 .174 Uiso calc R 1 . . H H13B 1.2591 .5632 .0031 .174 Uiso calc R 1 . . H C14 1.2894(7) .5595(9) .1408(7) .197(5) Uani d . 1 . . C H14A 1.3599 .5938 .1335 .295 Uiso calc R 1 . . H H14B 1.2930 .5057 .1916 .295 Uiso calc R 1 . . H H14C 1.2356 .6141 .1570 .295 Uiso calc R 1 . . H C15 .8091(3) .4930(3) -.1078(3) .0688(12) Uani d . 1 . . C H15A .7643 .4337 -.1333 .083 Uiso calc R 1 . . H H15B .8192 .5464 -.1593 .083 Uiso calc R 1 . . H C16 .7491(3) .5466(3) -.0252(4) .0788(15) Uani d . 1 . . C H16A .7929 .6067 .0002 .095 Uiso calc R 1 . . H H16B .7384 .4937 .0265 .095 Uiso calc R 1 . . H C17 .6388(4) .5899(5) -.0582(6) .119(2) Uani d . 1 . . C H17A .6512 .6458 -.1072 .143 Uiso calc R 1 . . H H17B .5988 .5303 -.0887 .143 Uiso calc R 1 . . H C18 .5687(5) .6378(5) .0196(7) .152(3) Uani d . 1 . . C H18A .5003 .6620 -.0078 .228 Uiso calc R 1 . . H H18B .6058 .6991 .0486 .228 Uiso calc R 1 . . H H18C .5546 .5830 .0682 .228 Uiso calc R 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Cu .0571(3) .0518(3) .0640(3) .0036(2) .0087(3) .0027(2) S .0571(5) .0505(5) .0884(10) .0029(4) .0076(5) .0076(5) O1 .0615(15) .0525(13) .084(2) .0113(12) .0036(18) .0038(16) N1 .0610(17) .0579(17) .049(2) .0010(14) .0088(17) -.0008(17) C1 .062(2) .067(2) .042(3) .0071(17) .0000(19) .007(2) O2 .0657(17) .0522(16) .101(3) .0041(13) .0180(15) -.0013(14) N2 .0566(18) .0513(17) .096(3) -.0021(14) -.0050(18) .0023(19) C2 .053(2) .080(3) .062(3) .0104(17) .000(2) .008(2) N3 .0563(18) .0515(18) .090(3) -.0003(14) .0024(18) .0071(17) O3 .0697(19) .0637(18) .144(3) -.0044(14) .041(2) -.0066(18) C3 .065(3) .094(3) .073(4) .021(2) .002(2) .001(3) C4 .074(3) .091(3) .090(4) .029(2) -.002(3) -.009(3) C5 .073(3) .068(2) .071(3) .0237(18) .006(2) .001(2) C6 .066(2) .056(2) .051(3) .0107(18) .008(2) .000(2) C7 .074(2) .059(2) .041(3) .0070(17) .013(2) -.001(2) C8 .066(2) .0519(19) .069(3) -.0006(16) .015(2) .000(2) C9 .062(2) .055(2) .082(4) .0042(19) .015(2) -.001(2) C10 .061(2) .049(2) .066(3) .0002(16) .0049(19) .0000(17) C11 .055(2) .069(3) .105(5) -.0057(18) -.011(2) .002(2) C12 .115(5) .113(4) .116(5) -.048(4) -.012(4) -.001(4) C13 .154(7) .138(6) .142(7) -.075(5) -.011(5) -.012(5) C14 .151(7) .312(14) .127(8) -.090(8) .018(6) -.069(8) C15 .058(2) .063(2) .085(4) .0020(18) -.004(2) .011(2) C16 .061(2) .060(2) .115(5) .0031(18) .005(2) .010(2) C17 .071(3) .091(4) .195(7) .020(3) .012(4) .016(4) C18 .088(4) .100(4) .268(10) .014(3) .066(5) .017(6) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cu Cu 0.3201 1.2651 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag O1 Cu N1 93.34(12) yes O1 Cu O2 162.05(15) yes N1 Cu O2 83.92(12) yes O1 Cu S 101.49(8) yes N1 Cu S 160.74(11) yes O2 Cu S 85.57(8) yes C10 S Cu 113.44(13) ? C1 O1 Cu 128.0(2) ? C7 N1 C8 120.5(3) ? C7 N1 Cu 126.9(3) ? C8 N1 Cu 112.2(2) ? O1 C1 C2 118.8(4) ? O1 C1 C6 123.5(3) ? C2 C1 C6 117.7(3) ? C9 O2 Cu 115.7(2) ? C10 N2 C11 125.5(3) ? C10 N2 H21 118(3) ? C11 N2 H21 117(3) ? C3 C2 C1 122.4(4) ? C3 C2 H2 126.7 ? C1 C2 H2 109.6 ? C10 N3 C15 124.9(3) ? C10 N3 H31 124(3) ? C15 N3 H31 111(3) ? C2 C3 C4 119.5(4) ? C2 C3 H3 125.7 ? C4 C3 H3 114.3 ? C5 C4 C3 120.2(4) ? C5 C4 H4 121.2 ? C3 C4 H4 118.3 ? C4 C5 C6 121.1(4) ? C4 C5 H5 127.3 ? C6 C5 H5 111.6 ? C1 C6 C5 119.1(4) ? C1 C6 C7 123.5(3) ? C5 C6 C7 117.4(3) ? N1 C7 C6 124.3(3) ? N1 C7 H7 117.6 ? C6 C7 H7 118.1 ? N1 C8 C9 109.3(3) ? N1 C8 H8A 107.3 ? C9 C8 H8A 108.2 ? N1 C8 H8B 113.1 ? C9 C8 H8B 111.5 ? H8A C8 H8B 107.2 ? O3 C9 O2 124.7(4) ? O3 C9 C8 120.2(3) ? O2 C9 C8 115.1(3) ? N2 C10 N3 120.3(3) ? N2 C10 S 120.3(3) ? N3 C10 S 119.4(3) ? N2 C11 C12 111.8(4) ? N2 C11 H11A 109.3 ? C12 C11 H11A 109.3 ? N2 C11 H11B 109.3 ? C12 C11 H11B 109.3 ? H11A C11 H11B 107.9 ? C11 C12 C13 110.4(6) ? C11 C12 H12A 109.6 ? C13 C12 H12A 109.6 ? C11 C12 H12B 109.6 ? C13 C12 H12B 109.6 ? H12A C12 H12B 108.1 ? C14 C13 C12 113.7(8) ? C14 C13 H13A 108.8 ? C12 C13 H13A 108.8 ? C14 C13 H13B 108.8 ? C12 C13 H13B 108.8 ? H13A C13 H13B 107.7 ? C13 C14 H14A 109.5 ? C13 C14 H14B 109.5 ? H14A C14 H14B 109.5 ? C13 C14 H14C 109.5 ? H14A C14 H14C 109.5 ? H14B C14 H14C 109.5 ? N3 C15 C16 113.2(4) ? N3 C15 H15A 108.9 ? C16 C15 H15A 108.9 ? N3 C15 H15B 108.9 ? C16 C15 H15B 108.9 ? H15A C15 H15B 107.8 ? C15 C16 C17 110.7(5) ? C15 C16 H16A 109.5 ? C17 C16 H16A 109.5 ? C15 C16 H16B 109.5 ? C17 C16 H16B 109.5 ? H16A C16 H16B 108.1 ? C18 C17 C16 115.3(7) ? C18 C17 H17A 108.4 ? C16 C17 H17A 108.4 ? C18 C17 H17B 108.4 ? C16 C17 H17B 108.4 ? H17A C17 H17B 107.5 ? C17 C18 H18A 109.5 ? C17 C18 H18B 109.5 ? H18A C18 H18B 109.5 ? C17 C18 H18C 109.5 ? H18A C18 H18C 109.5 ? H18B C18 H18C 109.5 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Cu O1 . 1.882(2) yes Cu N1 . 1.924(3) yes Cu O2 . 1.940(3) yes Cu S . 2.2791(11) yes S C10 . 1.727(4) ? O1 C1 . 1.324(4) ? N1 C7 . 1.295(5) ? N1 C8 . 1.451(5) ? C1 C2 . 1.401(5) ? C1 C6 . 1.413(5) ? O2 C9 . 1.295(5) ? N2 C10 . 1.314(5) ? N2 C11 . 1.455(5) ? N2 H21 . .898(10) ? C2 C3 . 1.370(6) ? C2 H2 . 1.1462 ? N3 C10 . 1.329(5) ? N3 C15 . 1.454(5) ? N3 H31 . .900(10) ? O3 C9 . 1.228(5) ? C3 C4 . 1.400(7) ? C3 H3 . 1.1199 ? C4 C5 . 1.357(6) ? C4 H4 . .9870 ? C5 C6 . 1.419(5) ? C5 H5 . 1.2692 ? C6 C7 . 1.432(5) ? C7 H7 . 1.1701 ? C8 C9 . 1.514(5) ? C8 H8A . .9230 ? C8 H8B . 1.1467 ? C11 C12 . 1.488(8) ? C11 H11A . .9700 ? C11 H11B . .9700 ? C12 C13 . 1.530(7) ? C12 H12A . .9700 ? C12 H12B . .9700 ? C13 C14 . 1.390(11) ? C13 H13A . .9700 ? C13 H13B . .9700 ? C14 H14A . .9600 ? C14 H14B . .9600 ? C14 H14C . .9600 ? C15 C16 . 1.503(6) ? C15 H15A . .9700 ? C15 H15B . .9700 ? C16 C17 . 1.513(7) ? C16 H16A . .9700 ? C16 H16B . .9700 ? C17 C18 . 1.491(10) ? C17 H17A . .9700 ? C17 H17B . .9700 ? C18 H18A . .9600 ? C18 H18B . .9600 ? C18 H18C . .9600 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N2 H21 O1 1_555 0.90 1.85 2.722(4) 160 yes N3 H31 O3 3_654 0.90 1.99 2.865(4) 165 yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion O1 Cu S C10 4.6(2) N1 Cu S C10 -135.0(4) O2 Cu S C10 167.9(2) N1 Cu O1 C1 3.3(5) O2 Cu O1 C1 83.9(6) S Cu O1 C1 -164.3(4) O1 Cu N1 C7 3.7(4) O2 Cu N1 C7 -158.5(4) S Cu N1 C7 144.2(3) O1 Cu N1 C8 175.9(3) O2 Cu N1 C8 13.7(3) S Cu N1 C8 -43.6(5) Cu O1 C1 C2 172.6(3) Cu O1 C1 C6 -7.2(7) O1 Cu O2 C9 -85.0(5) N1 Cu O2 C9 -2.9(3) S Cu O2 C9 160.9(3) O1 C1 C2 C3 179.2(5) C6 C1 C2 C3 -1.0(7) C1 C2 C3 C4 -0.9(8) C2 C3 C4 C5 0.4(8) C3 C4 C5 C6 1.9(8) O1 C1 C6 C5 -176.9(4) C2 C1 C6 C5 3.3(7) O1 C1 C6 C7 4.1(7) C2 C1 C6 C7 -175.6(4) C4 C5 C6 C1 -3.8(8) C4 C5 C6 C7 175.2(5) C8 N1 C7 C6 -178.6(4) Cu N1 C7 C6 -7.0(7) C1 C6 C7 N1 3.2(8) C5 C6 C7 N1 -175.8(5) C7 N1 C8 C9 152.2(4) Cu N1 C8 C9 -20.6(5) Cu O2 C9 O3 173.0(4) Cu O2 C9 C8 -8.4(5) N1 C8 C9 O3 -162.4(5) N1 C8 C9 O2 19.0(6) C11 N2 C10 N3 2.6(7) C11 N2 C10 S -175.6(4) C15 N3 C10 N2 179.2(4) C15 N3 C10 S -2.6(6) Cu S C10 N2 -15.3(4) Cu S C10 N3 166.5(3) C10 N2 C11 C12 84.8(6) N2 C11 C12 C13 172.1(6) C11 C12 C13 C14 -170.2(8) C10 N3 C15 C16 88.0(5) N3 C15 C16 C17 -179.7(4) C15 C16 C17 C18 175.8(4)