#------------------------------------------------------------------------------ #$Date: 2016-02-19 14:29:56 +0000 (Fri, 19 Feb 2016) $ #$Revision: 176759 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/81/2008134.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2008134 loop_ _publ_author_name 'Okabe, Nobuo ' ' Adachi, Yukari' _publ_contact_author ; Nobuo Okabe Faculty of Pharmaceutical Sciences Kinki University Kowakae 3-4-1 Higashiosaka Osaka 577 Japan ; _publ_section_title ; (S)-2-Hydroxy-3-(1H-imidazol-5-yl)propanoic acid hydrate ; _journal_issue 2 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 217 _journal_page_last 218 _journal_paper_doi 10.1107/S0108270198012542 _journal_volume 55 _journal_year 1999 _chemical_formula_iupac 'C6 H8 N2 O3 , H2 O' _chemical_formula_moiety C6H10N2O4 _chemical_formula_sum 'C6 H10 N2 O4' _chemical_formula_weight 174.156 _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_type_scat_source 'International Tables for X-ray Crystallography Vol. IV' _cell_angle_alpha 90 _cell_angle_beta 90 _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 7.756(6) _cell_length_b 17.107(2) _cell_length_c 6.090(2) _cell_measurement_reflns_used 25 _cell_measurement_temperature 296 _cell_measurement_theta_max 22.15 _cell_measurement_theta_min 18.25 _cell_volume 808.0(7) _computing_cell_refinement 'MSC/AFC Diffractometer Control Software' _computing_data_collection ; MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1988) ; _computing_data_reduction 'TEXSAN (Molecular Structure Corporation, 1985)' _computing_molecular_graphics 'ORTEPII (Johnson, 1976)' _computing_structure_refinement TEXSAN _computing_structure_solution 'MITHRIL (Gilmore, 1984) and DIRDIF (Beurskens, 1984)' _diffrn_measurement_device 'Rigaku AFC-5R' _diffrn_measurement_method \w-2\q _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71069 _diffrn_reflns_av_R_equivalents 0.00 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 22 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 7 _diffrn_reflns_limit_l_min 0 _diffrn_reflns_number 1120 _diffrn_reflns_theta_max 27.5 _diffrn_standards_decay_% 0.73 _diffrn_standards_interval_count 150 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.113 _exptl_absorpt_correction_T_max 1.00 _exptl_absorpt_correction_T_min 0.97 _exptl_absorpt_correction_type \y-scan _exptl_absorpt_process_details '(North et al., 1968)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.431 _exptl_crystal_density_meas ? _exptl_crystal_description plate _exptl_crystal_size_max 0.4 _exptl_crystal_size_mid 0.3 _exptl_crystal_size_min 0.1 _refine_diff_density_max 0.38 _refine_diff_density_min -0.20 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_obs 1.44 _refine_ls_hydrogen_treatment 'H atoms: see below' _refine_ls_number_parameters 117 _refine_ls_number_reflns 1100 _refine_ls_R_factor_obs 0.060 _refine_ls_shift/esd_max <0.001 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 4F~o~^2^/\s^2^(F~o~^2^)' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_obs 0.107 _reflns_number_observed 1100 _reflns_number_total 1120 _reflns_observed_criterion I>0 _cod_data_source_file cf1254.cif _cod_data_source_block CF1254 _cod_depositor_comments ; The following automatic conversions were performed: '_exptl_crystal_density_meas' value 'not measured' was changed to '?' - the value is perceived as not measured. Automatic conversion script Id: cif_fix_values 3008 2015-01-20 13:52:24Z robertas The following automatic conversions were performed: '_refine_ls_weighting_scheme' value 'w = 4F~o~^2^/\s^2^(F~o~^2^)' was changed to 'calc'. New tag '_refine_ls_weighting_details' was created. The value of the new tag was set to 'w = 4F~o~^2^/\s^2^(F~o~^2^)'. Automatic conversion script Id: cif_fix_values 3143 2015-03-26 13:38:13Z robertas ; _cod_original_cell_volume 808.1(6) _cod_database_code 2008134 loop_ _symmetry_equiv_pos_as_xyz x,y,z 1/2-x,-y,1/2+z 1/2+x,1/2-y,-z -x,1/2+y,1/2-z loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_adp_type O1 -0.0009(4) -1.05720(10) 0.9262(3) Bani O2 -0.0044(4) -0.97470(10) 1.2038(3) Bani O3 -0.1458(3) -0.86100(10) 0.9478(3) Bani O4 -0.4856(3) -0.90050(10) 0.9908(4) Bani N1 0.0358(4) -0.70750(10) 0.4601(4) Bani N3 0.0274(4) -0.83010(10) 0.3831(4) Bani C2 0.0056(5) -0.7584(2) 0.3031(5) Bani C4 0.0752(4) -0.8250(2) 0.5985(5) Bani C5 0.0786(5) -0.7475(2) 0.6459(5) Bani C6 0.1047(4) -0.8938(2) 0.7432(5) Bani C7 -0.0636(4) -0.92440(10) 0.8432(4) Bani C8 -0.0197(4) -0.99060(10) 1.0052(4) Bani H1 0.0289 -0.6524 0.4465 Biso H2 -0.0257 -0.7459 0.1563 Biso H3 0.0115 -0.8772 0.3033 Biso H4 0.1060 -0.7251 0.7840 Biso H5 0.1808 -0.8789 0.8596 Biso H6 0.1571 -0.9344 0.6604 Biso H7 -0.1352 -0.9439 0.7301 Biso H8 -0.2597 -0.8745 0.9718 Biso H9 -0.489(5) -0.924(2) 1.137(6) Biso H10 -0.493(6) -0.937(2) 0.910(6) Biso loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.111(2) 0.0198(8) 0.0370(10) -0.0040(10) -0.0070(10) 0.0006(8) O2 0.113(2) 0.0280(10) 0.0300(10) -0.0010(10) -0.0070(10) -0.0018(8) O3 0.0560(10) 0.0286(9) 0.0450(10) -0.0020(10) 0.0010(10) 0.00250(10) O4 0.0660(10) 0.0330(10) 0.0370(10) -0.0020(10) 0.0000(10) -0.0020(10) N1 0.074(2) 0.0200(10) 0.0440(10) -0.0040(10) 0.0010(10) 0.0030(10) N3 0.072(2) 0.0200(10) 0.0350(10) -0.0060(10) 0.0000(10) -0.0015(9) C2 0.075(2) 0.0280(10) 0.038(2) -0.005(2) -0.002(2) 0.0040(10) C4 0.053(2) 0.0260(10) 0.0340(10) -0.0060(10) 0.0030(10) -0.0020(10) C5 0.074(2) 0.0290(10) 0.0350(10) -0.0060(10) -0.002(2) -0.0020(10) C6 0.052(2) 0.0310(10) 0.042(2) 0.0040(10) -0.003(2) 0.0030(10) C7 0.051(2) 0.0240(10) 0.0310(10) -0.0010(10) -0.0040(10) -0.0010(10) C8 0.058(2) 0.0240(10) 0.0330(10) -0.0030(10) -0.001(2) 0.0020(10) loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C2 N1 C5 108.3(2) n C2 N3 C4 109.1(2) n N1 C2 N3 108.7(2) n N3 C4 C5 105.8(3) n N3 C4 C6 124.1(2) n C5 C4 C6 130.1(3) n N1 C5 C4 108.0(3) n C4 C6 C7 112.0(2) n O3 C7 C6 107.5(2) n O3 C7 C8 112.1(2) n C6 C7 C8 108.5(2) n O1 C8 O2 124.4(3) n O1 C8 C7 116.8(2) n O2 C8 C7 118.9(2) n C7 O3 H8 108.13 no H9 O4 H10 104(3) no C2 N1 H1 125.81 no C5 N1 H1 125.85 no C2 N3 H3 125.34 no C4 N3 H3 125.53 no N1 C2 H2 125.50 no N3 C2 H2 125.75 no N1 C5 H4 125.97 no C4 C5 H4 126.04 no C4 C6 H5 108.85 no C4 C6 H6 109.26 no C7 C6 H5 108.80 no C7 C6 H6 108.94 no H5 C6 H6 108.95 no O3 C7 H7 109.57 no C6 C7 H7 109.34 no C8 C7 H7 109.76 no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_1 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag O1 C8 . . 1.244(3) yes O2 C8 . . 1.246(3) yes O3 C7 . . 1.410(3) yes N1 C2 . . 1.314(4) yes N1 C5 . . 1.364(4) yes N3 C2 . . 1.330(3) yes N3 C4 . . 1.366(4) yes C4 C5 . . 1.357(4) yes C4 C6 . . 1.488(4) yes C6 C7 . . 1.533(4) yes C7 C8 . . 1.541(4) yes O3 H8 . . 0.925 no O4 H9 . . 0.98(3) no O4 H10 . . 0.79(4) no N1 H1 . . 0.947 no N3 H3 . . 0.949 no C2 H2 . . 0.951 no C5 H4 . . 0.949 no C6 H5 . . 0.957 no C6 H6 . . 0.950 no C7 H7 . . 0.945 no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N1 H1 O1 4_556 0.947 1.818 2.677(3) 149.4(2) yes N3 H3 O2 1_554 0.949 1.780 2.716(3) 169.0(2) yes O3 H8 O4 . 0.925 1.812 2.734(4) 174.60(10) yes O4 H9 O1 2_435 0.98(3) 1.79(3) 2.751(3) 166(3) yes O4 H10 O2 2_434 0.79(4) 1.97(4) 2.760(3) 176(4) yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag O(1) C(8) C(7) O(3) 157.1(3) no O(1) C(8) C(7) C(6) -84.3(3) no O(2) C(8) C(7) O(3) -23.3(4) no O(2) C(8) C(7) C(6) 95.2(4) no O(3) C(7) C(6) C(4) -53.7(3) no N(1) C(2) N(3) C(4) -0.7(4) no N(1) C(5) C(4) N(3) -0.8(4) no N(1) C(5) C(4) C(6) -177.4(3) no N(3) C(2) N(1) C(5) 0.2(4) no N(3) C(4) C(6) C(7) -83.9(4) no C(2) N(1) C(5) C(4) 0.4(4) no C(2) N(3) C(4) C(5) 1.0(4) no C(2) N(3) C(4) C(6) 177.8(3) no C(4) C(6) C(7) C(8) -175.2(2) no C(5) C(4) C(6) C(7) 92.1(4) no