#------------------------------------------------------------------------------ #$Date: 2015-04-02 12:22:18 +0100 (Thu, 02 Apr 2015) $ #$Revision: 134621 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/82/2008223.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2008223 loop_ _publ_author_name 'Cambie, Richard C.' 'Lorimer, Rachel M.' 'Rickard, Clifton E. F.' 'Rutledge, P. Stewart' _publ_section_title ; Two dioxane derivatives of anthraquinone ; _journal_issue 3 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 436 _journal_page_last 439 _journal_paper_doi 10.1107/S0108270198014541 _journal_volume 55 _journal_year 1999 _chemical_formula_sum 'C25 H26 O5' _chemical_formula_weight 406.46 _chemical_name_systematic ; (2'R,6'R)-4-Hydroxy-3-(2"methylprop-2"-enyloxo)-2-(4',4',6'-trimethyl- 1',3'-dioxan-2'-yl)anthraquinone. ; _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 6.79300(10) _cell_length_b 14.0076(2) _cell_length_c 22.27700(10) _cell_measurement_reflns_used 7212 _cell_measurement_temperature 203(2) _cell_measurement_theta_max 245 _cell_measurement_theta_min 2 _cell_volume 2119.74(4) _computing_cell_refinement SMART _computing_data_collection 'SMART (Siemens, 1995)' _computing_data_reduction 'SAINT (Siemens, 1995)' _computing_molecular_graphics 'SHELXTL (Siemens, 1994)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1990)' _diffrn_ambient_temperature 203(2) _diffrn_measured_fraction_theta_full 0.999 _diffrn_measured_fraction_theta_max 0.999 _diffrn_measurement_device_type 'Siemens SMART CCD' _diffrn_measurement_method 'Area detector \w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.023 _diffrn_reflns_av_sigmaI/netI 0.024 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min -8 _diffrn_reflns_limit_k_max 16 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 26 _diffrn_reflns_limit_l_min 0 _diffrn_reflns_number 12565 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 25.00 _diffrn_reflns_theta_min 1.72 _diffrn_standards_decay_% 0 _exptl_absorpt_coefficient_mu 0.088 _exptl_absorpt_correction_T_max 0.984 _exptl_absorpt_correction_T_min 0.960 _exptl_absorpt_correction_type 'multi-scan (Blessing, 1995)' _exptl_crystal_colour Orange _exptl_crystal_density_diffrn 1.274 _exptl_crystal_density_method 'not measured' _exptl_crystal_description Needle _exptl_crystal_F_000 864 _exptl_crystal_size_max 0.47 _exptl_crystal_size_mid 0.18 _exptl_crystal_size_min 0.18 _refine_diff_density_max 0.15 _refine_diff_density_min -0.11 _refine_ls_abs_structure_details 'Flack (1983)' _refine_ls_abs_structure_Flack '0.5(10); not reliably determined' _refine_ls_extinction_coef 0.0082(9) _refine_ls_extinction_method 'SHELXL97 (Sheldrick, 1990)' _refine_ls_goodness_of_fit_ref 1.035 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 276 _refine_ls_number_reflns 3734 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.035 _refine_ls_R_factor_all 0.044 _refine_ls_R_factor_gt 0.034 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.0407P)^2^+0.2833P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref 0.086 _reflns_number_gt 3232 _reflns_number_total 3734 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file bm1293.cif _[local]_cod_data_source_block 2 _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_refine_ls_weighting_scheme' value 'calc w = 1/[\s^2^(Fo^2^)+(0.0407P)^2^+0.2833P] where P=(Fo^2^+2Fc^2^)/3' was changed to 'calc'. New tag '_refine_ls_weighting_details' was created. The value of the new tag was set to 'w = 1/[\s^2^(Fo^2^)+(0.0407P)^2^+0.2833P] where P=(Fo^2^+2Fc^2^)/3'. Automatic conversion script Id: cif_fix_values 3143 2015-03-26 13:38:13Z robertas ; _cod_original_cell_volume 2119.77(4) _cod_database_code 2008223 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol O4 0.1205(2) 0.19020(9) 0.17708(5) 0.0540(4) Uani d . 1 . . O H4 0.1108 0.2450 0.1632 0.065 Uiso calc R 1 . . H O9 0.0796(2) 0.05196(9) -0.07789(6) 0.0609(4) Uani d . 1 . . O O10 0.0978(2) 0.31883(8) 0.09559(6) 0.0550(3) Uani d . 1 . . O C1 0.1239(2) -0.01045(11) 0.04125(7) 0.0381(4) Uani d . 1 . . C H1A 0.1198 -0.0572 0.0110 0.046 Uiso calc R 1 . . H C2 0.1462(2) -0.03813(11) 0.10127(8) 0.0380(4) Uani d . 1 . . C C3 0.1468(2) 0.02940(12) 0.14734(8) 0.0407(4) Uani d . 1 . . C C4 0.1232(3) 0.12653(12) 0.13163(8) 0.0411(4) Uani d . 1 . . C C4A 0.1084(2) 0.15508(11) 0.07146(7) 0.0370(4) Uani d . 1 . . C C5 0.1047(3) 0.38136(12) -0.02293(9) 0.0460(4) Uani d . 1 . . C H5A 0.1066 0.4277 0.0076 0.055 Uiso calc R 1 . . H C6 0.1065(3) 0.40919(13) -0.08199(9) 0.0520(5) Uani d . 1 . . C H6A 0.1092 0.4744 -0.0918 0.062 Uiso calc R 1 . . H C7 0.1042(3) 0.34116(14) -0.12708(9) 0.0528(5) Uani d . 1 . . C H7A 0.1061 0.3605 -0.1675 0.063 Uiso calc R 1 . . H C8 0.0991(3) 0.24471(13) -0.11301(8) 0.0476(4) Uani d . 1 . . C H8A 0.0968 0.1990 -0.1439 0.057 Uiso calc R 1 . . H C8A 0.0973(3) 0.21551(11) -0.05344(8) 0.0397(4) Uani d . 1 . . C C9 0.0928(3) 0.11175(11) -0.03844(8) 0.0417(4) Uani d . 1 . . C C9A 0.1078(3) 0.08448(11) 0.02611(7) 0.0362(4) Uani d . 1 . . C C10 0.1000(3) 0.25659(12) 0.05611(8) 0.0413(4) Uani d . 1 . . C C10A 0.1000(3) 0.28464(11) -0.00776(8) 0.0400(4) Uani d . 1 . . C O1' 0.1141(2) -0.19900(8) 0.06838(5) 0.0492(3) Uani d . 1 . . O C2' 0.1753(3) -0.14243(12) 0.11681(8) 0.0406(4) Uani d . 1 . . C H2'A 0.0969 -0.1586 0.1529 0.049 Uiso calc R 1 . . H O3' 0.37782(18) -0.15460(8) 0.12930(6) 0.0488(3) Uani d . 1 . . O C4' 0.4289(3) -0.25270(14) 0.14563(10) 0.0588(5) Uani d . 1 . . C C5' 0.3475(3) -0.31880(13) 0.09782(10) 0.0602(6) Uani d . 1 . . C H5'A 0.4260 -0.3118 0.0612 0.072 Uiso calc R 1 . . H H5'B 0.3606 -0.3850 0.1115 0.072 Uiso calc R 1 . . H C6' 0.1344(3) -0.29931(12) 0.08330(9) 0.0550(5) Uani d . 1 . . C H6'A 0.0532 -0.3135 0.1191 0.066 Uiso calc R 1 . . H C7' 0.6527(4) -0.2532(2) 0.14624(16) 0.1038(10) Uani d . 1 . . C H7'A 0.7016 -0.2335 0.1073 0.156 Uiso calc R 1 . . H H7'B 0.6994 -0.3171 0.1551 0.156 Uiso calc R 1 . . H H7'C 0.6998 -0.2094 0.1767 0.156 Uiso calc R 1 . . H C8' 0.3518(4) -0.27601(16) 0.20825(11) 0.0788(7) Uani d . 1 . . C H8'A 0.4020 -0.2296 0.2367 0.118 Uiso calc R 1 . . H H8'B 0.3952 -0.3394 0.2198 0.118 Uiso calc R 1 . . H H8'C 0.2090 -0.2739 0.2081 0.118 Uiso calc R 1 . . H C9' 0.0561(6) -0.35524(16) 0.03065(13) 0.1035(11) Uani d . 1 . . C H9'A -0.0747 -0.3325 0.0206 0.155 Uiso calc R 1 . . H H9'B 0.0499 -0.4224 0.0411 0.155 Uiso calc R 1 . . H H9'C 0.1427 -0.3467 -0.0036 0.155 Uiso calc R 1 . . H C1" 0.1772(3) 0.00524(13) 0.21252(8) 0.0497(5) Uani d . 1 . . C H1"A 0.2494 0.0579 0.2314 0.060 Uiso calc R 1 . . H H1"B 0.2610 -0.0516 0.2148 0.060 Uiso calc R 1 . . H C2" -0.0066(3) -0.01324(13) 0.24900(9) 0.0510(5) Uani d . 1 . . C C3" -0.1803(4) -0.02816(16) 0.22535(11) 0.0678(6) Uani d . 1 . . C H3"1 -0.2891 -0.0404 0.2503 0.081 Uiso calc R 1 . . H H3"2 -0.1963 -0.0266 0.1834 0.081 Uiso calc R 1 . . H C4" 0.0287(5) -0.01469(19) 0.31559(10) 0.0862(8) Uani d . 1 . . C H4"A -0.0923 -0.0316 0.3361 0.129 Uiso calc R 1 . . H H4"B 0.0716 0.0480 0.3287 0.129 Uiso calc R 1 . . H H4"C 0.1297 -0.0614 0.3249 0.129 Uiso calc R 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O4 0.0703(9) 0.0427(7) 0.0488(7) -0.0008(7) 0.0060(7) -0.0127(5) O9 0.0938(11) 0.0421(7) 0.0468(8) -0.0016(7) 0.0001(8) -0.0052(6) O10 0.0672(8) 0.0378(7) 0.0601(8) 0.0019(7) 0.0086(7) -0.0130(6) C1 0.0367(9) 0.0349(8) 0.0427(9) -0.0009(7) 0.0035(8) -0.0050(7) C2 0.0316(9) 0.0356(9) 0.0469(10) 0.0002(7) 0.0019(7) -0.0024(7) C3 0.0365(9) 0.0413(9) 0.0442(9) -0.0012(8) 0.0016(7) -0.0036(8) C4 0.0374(9) 0.0393(9) 0.0465(10) -0.0008(8) 0.0038(8) -0.0095(8) C4A 0.0299(8) 0.0348(8) 0.0464(9) -0.0004(7) 0.0059(8) -0.0057(7) C5 0.0353(9) 0.0348(9) 0.0678(12) 0.0004(8) 0.0038(10) -0.0009(8) C6 0.0411(10) 0.0392(9) 0.0756(14) 0.0022(9) 0.0039(10) 0.0111(9) C7 0.0454(10) 0.0520(11) 0.0608(12) 0.0022(10) 0.0022(10) 0.0128(9) C8 0.0449(10) 0.0445(10) 0.0534(11) 0.0025(9) 0.0027(9) 0.0039(8) C8A 0.0320(8) 0.0383(9) 0.0489(10) 0.0000(8) 0.0038(8) 0.0001(7) C9 0.0401(10) 0.0385(9) 0.0466(10) 0.0002(8) 0.0023(8) -0.0041(7) C9A 0.0307(8) 0.0345(8) 0.0436(9) 0.0006(7) 0.0029(8) -0.0045(7) C10 0.0320(8) 0.0362(9) 0.0557(10) 0.0014(8) 0.0059(8) -0.0054(8) C10A 0.0276(8) 0.0378(9) 0.0545(10) 0.0012(7) 0.0058(8) -0.0004(7) O1' 0.0629(8) 0.0326(6) 0.0520(7) 0.0028(6) -0.0113(7) -0.0012(5) C2' 0.0382(9) 0.0386(9) 0.0451(10) 0.0000(7) -0.0003(8) 0.0008(7) O3' 0.0393(7) 0.0433(7) 0.0639(8) 0.0033(6) -0.0030(6) 0.0082(6) C4' 0.0489(12) 0.0489(11) 0.0786(14) 0.0082(9) -0.0025(10) 0.0163(10) C5' 0.0726(14) 0.0410(11) 0.0670(13) 0.0151(10) 0.0145(11) 0.0094(9) C6' 0.0741(14) 0.0313(9) 0.0596(12) 0.0037(10) -0.0040(11) 0.0021(8) C7' 0.0529(15) 0.0803(18) 0.178(3) 0.0175(13) -0.0101(17) 0.037(2) C8' 0.106(2) 0.0617(13) 0.0687(14) 0.0014(14) -0.0183(15) 0.0190(11) C9' 0.175(3) 0.0398(12) 0.096(2) 0.0063(16) -0.053(2) -0.0121(12) C1" 0.0575(12) 0.0452(10) 0.0464(10) 0.0023(9) -0.0044(9) -0.0044(8) C2" 0.0730(14) 0.0327(9) 0.0473(10) 0.0065(9) 0.0097(10) 0.0051(8) C3" 0.0646(15) 0.0686(14) 0.0704(15) 0.0082(12) 0.0180(12) 0.0137(12) C4" 0.134(2) 0.0729(16) 0.0512(13) -0.0148(16) 0.0089(14) 0.0092(12) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C9A C1 C2 120.67(15) C3 C2 C1 120.98(15) C3 C2 C2' 119.04(15) C1 C2 C2' 119.96(14) C2 C3 C4 118.02(16) C2 C3 C1" 123.88(16) C4 C3 C1" 118.08(15) O4 C4 C4A 121.85(15) O4 C4 C3 116.86(15) C4A C4 C3 121.27(15) C4 C4A C9A 118.93(15) C4 C4A C10 120.20(14) C9A C4A C10 120.84(15) C6 C5 C10A 120.51(17) C5 C6 C7 120.00(17) C6 C7 C8 120.43(19) C7 C8 C8A 120.20(18) C8 C8A C10A 119.28(15) C8 C8A C9 120.08(15) C10A C8A C9 120.64(16) O9 C9 C9A 121.66(15) O9 C9 C8A 120.68(16) C9A C9 C8A 117.65(14) C1 C9A C4A 120.04(15) C1 C9A C9 119.29(14) C4A C9A C9 120.67(14) O10 C10 C4A 121.24(16) O10 C10 C10A 119.81(15) C4A C10 C10A 118.93(14) C5 C10A C8A 119.58(16) C5 C10A C10 119.43(16) C8A C10A C10 120.99(15) C2' O1' C6' 110.05(13) O1' C2' O3' 111.83(14) O1' C2' C2 109.31(14) O3' C2' C2 106.75(13) C2' O3' C4' 113.14(13) O3' C4' C5' 108.19(15) O3' C4' C7' 104.12(17) C5' C4' C7' 111.6(2) O3' C4' C8' 110.30(17) C5' C4' C8' 112.73(18) C7' C4' C8' 109.5(2) C6' C5' C4' 112.99(16) O1' C6' C9' 106.94(16) O1' C6' C5' 108.42(16) C9' C6' C5' 114.3(2) C3 C1" C2" 116.36(16) C3" C2" C4" 122.6(2) C3" C2" C1" 123.73(19) C4" C2" C1" 113.7(2) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag O4 C4 . 1.3493(19) ? O9 C9 . 1.217(2) ? O10 C10 . 1.238(2) ? C1 C9A . 1.376(2) ? C1 C2 . 1.400(2) ? C2 C3 . 1.396(2) ? C2 C2' . 1.514(2) n C3 C4 . 1.414(2) ? C3 C1" . 1.505(2) n C4 C4A . 1.403(2) ? C4A C9A . 1.414(2) ? C4A C10 . 1.463(2) ? C5 C6 . 1.372(3) ? C5 C10A . 1.397(2) ? C6 C7 . 1.385(3) ? C7 C8 . 1.387(3) ? C8 C8A . 1.389(2) ? C8A C10A . 1.405(2) ? C8A C9 . 1.492(2) ? C9 C9A . 1.491(2) ? C10 C10A . 1.476(3) ? O1' C2' . 1.402(2) n O1' C6' . 1.451(2) n C2' O3' . 1.414(2) n O3' C4' . 1.463(2) n C4' C5' . 1.516(3) n C4' C7' . 1.520(3) n C4' C8' . 1.526(3) n C5' C6' . 1.508(3) n C6' C9' . 1.508(3) n C1" C2" . 1.512(3) n C2" C3" . 1.309(3) n C2" C4" . 1.503(3) n loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O4 H4 O10 0.83 1.83 2.562(2) 146 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion O1' C2' O3' C4' -60.90(19) C2' O3' C4' C5' 51.6(2) O3' C4' C5' C6' -49.1(2) C4' C5' C6' O1' 53.5(2) C5' C6' O1' C2' -59.2(2) C6' O1' C2' O3' 64.01(19)