#------------------------------------------------------------------------------ #$Date: 2016-02-19 14:29:56 +0000 (Fri, 19 Feb 2016) $ #$Revision: 176759 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/82/2008243.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2008243 loop_ _publ_author_name 'S. Kolappan' 'T. P. Seshadri' _publ_section_title ; N^4^-Anisoylcytidine dihydrate ; _journal_issue 3 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 391 _journal_page_last 392 _journal_paper_doi 10.1107/S0108270198013274 _journal_volume 55 _journal_year 1999 _chemical_formula_moiety 'C17 H19 N3 O7, 2H2 O' _chemical_formula_sum 'C17 H23 N3 O9' _chemical_formula_weight 413.38 _chemical_name_systematic ; N^4^Anisoylcytidine Dihydrate ; _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _audit_creation_method SHELXL _cell_angle_alpha 90.00 _cell_angle_beta 97.280(10) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 4.851(2) _cell_length_b 13.535(3) _cell_length_c 14.013(5) _cell_measurement_reflns_used 25 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 20 _cell_measurement_theta_min 6 _cell_volume 912.7(5) _computing_data_collection 'CAD-4 Software (Enraf-Nonius, 1989)' _computing_data_reduction 'CAD-4 Software' _computing_molecular_graphics ; INSIGHT II (Biosym Technologies, 1995) and Xtal_GX (Hall & du Boulay, 1995) ; _computing_publication_material SHELXL93 _computing_structure_refinement 'SHELXL93 (Sheldrick, 1993)' _computing_structure_solution 'SHELXS86 (Sheldrick, 1990)' _diffrn_ambient_temperature 293(2) _diffrn_measurement_device 'Enraf-Nonius CAD4' _diffrn_measurement_method \w/2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.5418 _diffrn_reflns_av_R_equivalents 0.060 _diffrn_reflns_av_sigmaI/netI 0.024 _diffrn_reflns_limit_h_max 5 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 16 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 17 _diffrn_reflns_limit_l_min -17 _diffrn_reflns_number 2046 _diffrn_reflns_theta_max 71.87 _diffrn_reflns_theta_min 3.18 _diffrn_standards_decay_% none _diffrn_standards_interval_count 100 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 1.052 _exptl_absorpt_correction_type none _exptl_crystal_colour Colourless _exptl_crystal_density_diffrn 1.504 _exptl_crystal_density_method 'not measured' _exptl_crystal_description Needle _exptl_crystal_F_000 436 _exptl_crystal_size_max 1.1 _exptl_crystal_size_mid 0.05 _exptl_crystal_size_min 0.05 _refine_diff_density_max 0.392 _refine_diff_density_min -0.219 _refine_ls_abs_structure_details 'Flack (1983)' _refine_ls_abs_structure_Flack -0.3(3) _refine_ls_extinction_coef 0.0053(16) _refine_ls_extinction_method 'SHELXL93 (Sheldrick, 1993)' _refine_ls_goodness_of_fit_all 1.051 _refine_ls_goodness_of_fit_obs 1.062 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 284 _refine_ls_number_reflns 1857 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.136 _refine_ls_restrained_S_obs 1.062 _refine_ls_R_factor_all 0.049 _refine_ls_R_factor_obs 0.042 _refine_ls_shift/esd_max 0.005 _refine_ls_shift/esd_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[s^2^(Fo^2^)+( 0.1042P)^2^+0.0243P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_all 0.132 _refine_ls_wR_factor_obs 0.117 _reflns_number_observed 1682 _reflns_number_total 1864 _reflns_observed_criterion I>2\s(I) _cod_data_source_file de1095.cif _cod_data_source_block asyl _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_refine_ls_weighting_scheme' value 'calc w = 1/[s^2^(Fo^2^)+( 0.1042P)^2^+0.0243P] where P=(Fo^2^+2Fc^2^)/3' was changed to 'calc'. New tag '_refine_ls_weighting_details' was created. The value of the new tag was set to 'w = 1/[s^2^(Fo^2^)+( 0.1042P)^2^+0.0243P] where P=(Fo^2^+2Fc^2^)/3'. Automatic conversion script Id: cif_fix_values 3143 2015-03-26 13:38:13Z robertas ; _cod_original_sg_symbol_H-M 'P 21' _cod_database_code 2008243 _cod_database_fobs_code 2008243 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 0.0236(11) 0.0238(12) 0.0242(11) 0.0010(9) -0.0061(9) -0.0013(9) C2 0.0258(13) 0.0243(13) 0.0282(13) 0.0007(12) -0.0055(10) -0.0034(11) O2 0.0449(13) 0.0253(11) 0.0412(12) 0.0082(9) -0.0189(10) -0.0050(10) N3 0.0315(12) 0.0280(13) 0.0291(12) 0.0016(10) -0.0096(10) -0.0038(10) C4 0.0233(13) 0.034(2) 0.0230(13) -0.0031(12) -0.0024(10) 0.0001(11) N4 0.0285(13) 0.0284(13) 0.0336(13) -0.0043(10) -0.0103(10) 0.0007(10) C5 0.035(2) 0.0277(15) 0.0332(15) 0.0067(13) -0.0134(12) 0.0009(12) C6 0.036(2) 0.0242(14) 0.0338(15) 0.0025(13) -0.0108(12) -0.0023(12) C1' 0.0191(12) 0.0232(13) 0.0255(13) -0.0026(10) -0.0047(9) -0.0021(10) C2' 0.0184(12) 0.0267(14) 0.0276(13) -0.0031(10) -0.0020(9) -0.0003(11) O2' 0.0295(11) 0.0255(10) 0.0364(11) -0.0059(9) -0.0006(8) 0.0046(8) C3' 0.0208(12) 0.0280(14) 0.0273(13) 0.0004(10) -0.0010(9) -0.0046(11) O3' 0.0277(10) 0.0361(11) 0.0351(11) 0.0036(9) -0.0126(8) -0.0050(9) C4' 0.0167(13) 0.0238(13) 0.0334(14) -0.0020(10) 0.0002(10) -0.0066(12) O4' 0.0285(10) 0.0234(10) 0.0309(10) -0.0048(8) 0.0023(8) -0.0025(8) C5' 0.0250(15) 0.0296(15) 0.052(2) 0.0046(12) 0.0067(13) 0.0022(14) O5' 0.0331(12) 0.0319(12) 0.065(2) 0.0092(10) 0.0057(11) 0.0088(12) C7 0.0244(14) 0.033(2) 0.0276(14) 0.0013(12) -0.0031(11) -0.0023(12) O7 0.0427(13) 0.0295(11) 0.0435(12) 0.0006(10) -0.0182(10) 0.0011(10) C8 0.0216(13) 0.031(2) 0.0310(14) -0.0002(12) -0.0015(11) 0.0012(12) C9 0.0327(15) 0.0282(15) 0.036(2) -0.0004(13) -0.0095(13) 0.0016(13) C10 0.0274(15) 0.038(2) 0.036(2) 0.0008(13) -0.0087(12) 0.0051(13) C11 0.0255(14) 0.035(2) 0.0301(15) -0.0052(12) -0.0036(11) 0.0024(12) C12 0.045(2) 0.031(2) 0.040(2) -0.0051(14) -0.0100(14) 0.0044(13) C13 0.039(2) 0.031(2) 0.036(2) -0.0026(14) -0.0141(13) 0.0064(14) O14 0.0456(15) 0.0404(13) 0.0400(13) -0.0107(11) -0.0166(11) 0.0038(10) C15 0.038(2) 0.057(2) 0.038(2) -0.008(2) -0.0143(14) 0.002(2) O1W 0.0476(14) 0.0322(12) 0.0427(13) -0.0067(11) -0.0099(10) -0.0001(11) O2W 0.0414(14) 0.062(2) 0.051(2) -0.0068(13) -0.0108(11) 0.0103(14) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_group _atom_site_type_symbol N1 0.3030(5) 0.4552(2) 0.6724(2) 0.0247(5) Uani d . 1 . N C2 0.3279(6) 0.5526(3) 0.7052(2) 0.0269(6) Uani d . 1 . C O2 0.1660(5) 0.6165(2) 0.6685(2) 0.0392(6) Uani d . 1 . O N3 0.5373(6) 0.5743(2) 0.7765(2) 0.0307(6) Uani d . 1 . N C4 0.7003(6) 0.5041(3) 0.8155(2) 0.0273(6) Uani d . 1 . C N4 0.9122(5) 0.5392(3) 0.8833(2) 0.0314(6) Uani d . 1 . N H4 0.9382(5) 0.6021(3) 0.8836(2) 0.044(12) Uiso calc R 1 . H C5 0.6714(7) 0.4044(3) 0.7895(2) 0.0334(7) Uani d . 1 . C H5 0.7847(7) 0.3556(3) 0.8203(2) 0.086(19) Uiso calc R 1 . H C6 0.4676(7) 0.3831(3) 0.7163(2) 0.0325(7) Uani d . 1 . C H6 0.4406(7) 0.3180(3) 0.6961(2) 0.047(12) Uiso calc R 1 . H C1' 0.1067(6) 0.4357(3) 0.5842(2) 0.0232(6) Uani d . 1 . C H1' -0.0585(6) 0.4775(3) 0.5836(2) 0.022(8) Uiso calc R 1 . H C2' 0.2434(6) 0.4536(3) 0.4930(2) 0.0247(6) Uani d . 1 . C H2' 0.4373(6) 0.4318(3) 0.5052(2) 0.023(8) Uiso calc R 1 . H O2' 0.2400(4) 0.5520(2) 0.4621(2) 0.0309(5) Uani d . 1 . O H2'O 0.089(5) 0.5769(15) 0.469(5) 0.09(2) Uiso calc R 1 . H C3' 0.0837(6) 0.3808(3) 0.4222(2) 0.0257(6) Uani d . 1 . C H3' 0.1868(6) 0.3646(3) 0.3685(2) 0.019(8) Uiso calc R 1 . H O3' -0.1783(5) 0.4239(2) 0.3904(2) 0.0344(5) Uani d . 1 . O H3'O -0.258(4) 0.391(2) 0.346(2) 0.054(14) Uiso calc R 1 . H C4' 0.0609(5) 0.2927(3) 0.4881(2) 0.0249(6) Uani d . 1 . C H4' -0.1067(5) 0.2550(3) 0.4648(2) 0.025(8) Uiso calc R 1 . H O4' 0.0291(4) 0.3351 0.5821(2) 0.0277(5) Uani d . 1 . O C5' 0.3081(7) 0.2253(3) 0.4944(3) 0.0354(7) Uani d . 1 . C H5' 0.3291(7) 0.1995(3) 0.4311(3) 0.041(11) Uiso calc R 1 . H H5" 0.4754(7) 0.2615(3) 0.5181(3) 0.029(9) Uiso calc R 1 . H O5' 0.2682(5) 0.1461(2) 0.5580(2) 0.0435(6) Uani d . 1 . O H5'O 0.410(4) 0.113(2) 0.567(3) 0.050(13) Uiso calc R 1 . H C7 1.0852(6) 0.4862(3) 0.9497(2) 0.0289(6) Uani d . 1 . C O7 1.0561(5) 0.3977(2) 0.9598(2) 0.0406(6) Uani d . 1 . O C8 1.3085(6) 0.5426(3) 1.0081(2) 0.0282(6) Uani d . 1 . C C9 1.4963(7) 0.4905(3) 1.0718(2) 0.0336(7) Uani d . 1 . C H9 1.4806(7) 0.4221(3) 1.0750(2) 0.061(14) Uiso calc R 1 . H C10 1.7080(7) 0.5377(3) 1.1311(2) 0.0348(7) Uani d . 1 . C H10 1.8322(7) 0.5014(3) 1.1733(2) 0.057(14) Uiso calc R 1 . H C11 1.7316(6) 0.6395(3) 1.1266(2) 0.0307(6) Uani d . 1 . C C12 1.5505(8) 0.6926(3) 1.0609(3) 0.0399(8) Uani d . 1 . C H12 1.5703(8) 0.7607(3) 1.0562(3) 0.076(18) Uiso calc R 1 . H C13 1.3425(7) 0.6450(3) 1.0028(2) 0.0372(7) Uani d . 1 . C H13 1.2224(7) 0.6814(3) 0.9592(2) 0.064(15) Uiso calc R 1 . H O14 1.9221(5) 0.6935(3) 1.1828(2) 0.0439(6) Uani d . 1 . O C15 2.1004(8) 0.6426(4) 1.2550(3) 0.0459(9) Uani d . 1 . C H15 2.2251(8) 0.6889(4) 1.2899(3) 0.12(3) Uiso calc R 1 . H H15' 2.2057(8) 0.5939(4) 1.2254(3) 0.14(3) Uiso calc R 1 . H H15" 1.9909(8) 0.6108(4) 1.2985(3) 0.041(11) Uiso calc R 1 . H O1W 0.6515(5) 0.2936(2) 0.2439(2) 0.0422(6) Uani d . 1 . O O2W 0.1121(6) 0.2875(3) 0.1376(2) 0.0530(7) Uani d . 1 . O loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0181 .0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N .0311 .0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0492 .0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C6 N1 C2 120.5(2) C6 N1 C1' 121.8(2) C2 N1 C1' 117.5(2) O2 C2 N3 122.0(3) O2 C2 N1 120.0(3) N3 C2 N1 118.0(3) C4 N3 C2 120.3(3) N3 C4 N4 113.0(3) N3 C4 C5 123.7(3) N4 C4 C5 123.2(3) C7 N4 C4 128.2(3) C7 N4 H4 115.9(2) C4 N4 H4 115.9(2) C6 C5 C4 116.1(3) C6 C5 H5 122.0(2) C4 C5 H5 122.0(2) C5 C6 N1 121.2(3) C5 C6 H6 119.4(2) N1 C6 H6 119.4(2) O4' C1' N1 109.3(2) O4' C1' C2' 106.1(2) N1 C1' C2' 111.5(2) O4' C1' H1' 109.97(14) N1 C1' H1' 109.97(14) C2' C1' H1' 109.97(15) O2' C2' C1' 114.7(2) O2' C2' C3' 115.2(2) C1' C2' C3' 101.6(2) O2' C2' H2' 108.31(15) C1' C2' H2' 108.31(15) C3' C2' H2' 108.3(2) C2' O2' H2'O 109.5(2) O3' C3' C4' 112.5(2) O3' C3' C2' 107.3(2) C4' C3' C2' 100.4(2) O3' C3' H3' 112.0(2) C4' C3' H3' 112.00(15) C2' C3' H3' 112.00(15) C3' O3' H3'O 109.47(15) O4' C4' C5' 111.1(2) O4' C4' C3' 105.2(2) C5' C4' C3' 113.2(2) O4' C4' H4' 109.06(13) C5' C4' H4' 109.1(2) C3' C4' H4' 109.06(14) C1' O4' C4' 109.8(2) O5' C5' C4' 108.9(3) O5' C5' H5' 109.9(2) C4' C5' H5' 109.9(2) O5' C5' H5" 109.9(2) C4' C5' H5" 109.9(2) H5' C5' H5" 108.3 C5' O5' H5'O 109.5(2) O7 C7 N4 121.6(3) O7 C7 C8 122.0(3) N4 C7 C8 116.4(3) C9 C8 C13 117.8(3) C9 C8 C7 117.9(3) C13 C8 C7 124.3(3) C8 C9 C10 121.7(3) C8 C9 H9 119.2(2) C10 C9 H9 119.2(2) C11 C10 C9 119.3(3) C11 C10 H10 120.4(2) C9 C10 H10 120.4(2) O14 C11 C10 124.5(3) O14 C11 C12 115.8(3) C10 C11 C12 119.7(3) C13 C12 C11 120.4(3) C13 C12 H12 119.8(2) C11 C12 H12 119.8(2) C12 C13 C8 121.0(3) C12 C13 H13 119.5(2) C8 C13 H13 119.5(2) C11 O14 C15 117.6(3) O14 C15 H15 109.5(2) O14 C15 H15' 109.5(2) H15 C15 H15' 109.5 O14 C15 H15" 109.5(2) H15 C15 H15" 109.5 H15' C15 H15" 109.5 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag N1 C6 . 1.358(4) ? N1 C2 . 1.397(4) ? N1 C1' . 1.485(3) ? C2 O2 . 1.235(4) ? C2 N3 . 1.363(4) ? N3 C4 . 1.311(4) ? C4 N4 . 1.392(4) ? C4 C5 . 1.400(4) ? N4 C7 . 1.374(4) ? N4 H4 . 0.86 ? C5 C6 . 1.362(4) ? C5 H5 . 0.93 ? C6 H6 . 0.93 ? C1' O4' . 1.412(3) ? C1' C2' . 1.532(4) ? C1' H1' . 0.98 ? C2' O2' . 1.400(4) ? C2' C3' . 1.536(4) ? C2' H2' . 0.98 ? O2' H2'O . 0.82 ? C3' O3' . 1.419(4) ? C3' C4' . 1.521(4) ? C3' H3' . 0.98 ? O3' H3'O . 0.82 ? C4' O4' . 1.462(3) ? C4' C5' . 1.500(4) ? C4' H4' . 0.98 ? C5' O5' . 1.423(4) ? C5' H5' . 0.97 ? C5' H5" . 0.97 ? O5' H5'O . 0.82 ? C7 O7 . 1.216(4) ? C7 C8 . 1.484(4) ? C8 C9 . 1.386(4) ? C8 C13 . 1.398(4) ? C9 C10 . 1.392(5) ? C9 H9 . 0.93 ? C10 C11 . 1.384(5) ? C10 H10 . 0.93 ? C11 O14 . 1.350(4) ? C11 C12 . 1.390(4) ? C12 C13 . 1.374(5) ? C12 H12 . 0.93 ? C13 H13 . 0.93 ? O14 C15 . 1.423(4) ? C15 H15 . 0.96 ? C15 H15' . 0.96 ? C15 H15" . 0.96 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA C5 H5 O7 1_555 0.93 2.29 2.839(4) 118 N4 H4 O2W 2_656 0.86 2.54 3.374(5) 165 O1W ? O2 2_646 ? ? 2.787(4) ? O1W ? N3 2_646 ? ? 3.110(5) ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C6 N1 C2 O2 -175.6(3) ? C1' N1 C2 O2 8.9(4) ? C6 N1 C2 N3 5.7(4) ? C1' N1 C2 N3 -169.9(3) ? O2 C2 N3 C4 178.1(3) ? N1 C2 N3 C4 -3.2(4) ? C2 N3 C4 N4 176.6(3) ? C2 N3 C4 C5 -1.1(5) ? N3 C4 N4 C7 166.7(3) ? C5 C4 N4 C7 -15.5(5) ? N3 C4 C5 C6 2.9(5) ? N4 C4 C5 C6 -174.6(3) ? C4 C5 C6 N1 -0.3(5) ? C2 N1 C6 C5 -3.9(5) ? C1' N1 C6 C5 171.4(3) ? C6 N1 C1' O4' 26.5(4) ? C2 N1 C1' O4' -158.1(2) yes C6 N1 C1' C2' -90.5(3) ? C2 N1 C1' C2' 85.0(3) ? O4' C1' C2' O2' 156.9(2) ? N1 C1' C2' O2' -84.3(3) ? O4' C1' C2' C3' 31.9(3) yes N1 C1' C2' C3' 150.8(2) ? O2' C2' C3' O3' -46.8(3) ? C1' C2' C3' O3' 77.8(3) ? O2' C2' C3' C4' -164.5(2) ? C1' C2' C3' C4' -39.9(3) yes O3' C3' C4' O4' -78.9(3) ? C2' C3' C4' O4' 34.9(2) yes O3' C3' C4' C5' 159.6(3) ? C2' C3' C4' C5' -86.6(3) ? N1 C1' O4' C4' -130.5(2) ? C2' C1' O4' C4' -10.2(3) yes C5' C4' O4' C1' 106.8(3) ? C3' C4' O4' C1' -16.0(3) yes O4' C4' C5' O5' 61.3(3) yes C3' C4' C5' O5' 179.5(3) yes C4 N4 C7 O7 -4.7(5) ? C4 N4 C7 C8 175.3(3) ? O7 C7 C8 C9 3.7(5) ? N4 C7 C8 C9 -176.4(3) ? O7 C7 C8 C13 -176.6(3) ? N4 C7 C8 C13 3.3(5) ? C13 C8 C9 C10 1.9(5) ? C7 C8 C9 C10 -178.4(3) ? C8 C9 C10 C11 0.1(5) ? C9 C10 C11 O14 177.6(3) ? C9 C10 C11 C12 -2.2(5) ? O14 C11 C12 C13 -177.6(3) ? C10 C11 C12 C13 2.3(5) ? C11 C12 C13 C8 -0.2(6) ? C9 C8 C13 C12 -1.9(5) ? C7 C8 C13 C12 178.5(3) ? C10 C11 O14 C15 -3.6(5) ? C12 C11 O14 C15 176.3(3) ?