#------------------------------------------------------------------------------ #$Date: 2017-10-13 01:08:28 +0100 (Fri, 13 Oct 2017) $ #$Revision: 201955 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/83/2008317.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2008317 loop_ _publ_author_name 'Meyers, Cal Y.' 'Hou, Yuqing' 'Robinson, Paul D.' _publ_section_title ; ap-9-(o-tert-Butylphenyl)-9-methylthiofluorene, the first isolated ap rotamer of a 9-substituted 9-(o-tert-butylphenyl)fluorene ; _journal_issue 4 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 626 _journal_page_last 628 _journal_paper_doi 10.1107/S010827019801453X _journal_volume 55 _journal_year 1999 _chemical_formula_moiety 'C24 H24 S' _chemical_formula_sum 'C24 H24 S' _chemical_formula_weight 344.49 _chemical_name_systematic ; 1-(2-deoxy-\a-L-erythro-pentopyranosyl) 1-(S),2-(S), 4-triazolidine-3,5-dione ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _cell_angle_alpha 90.00 _cell_angle_beta 93.80(3) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 12.014(6) _cell_length_b 9.800(2) _cell_length_c 16.068(3) _cell_measurement_reflns_used 25 _cell_measurement_temperature 296 _cell_measurement_theta_max 13.5 _cell_measurement_theta_min 12.6 _cell_volume 1887.6(11) _computing_cell_refinement 'MSC/AFC Diffractometer Control Software' _computing_data_collection ; MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1996) ; _computing_data_reduction 'PROCESS in TEXSAN (Molecular Structure Corporation, 1997)' _computing_molecular_graphics 'TEXSAN and ORTEP (Johnson, 1965)' _computing_publication_material 'TEXSAN, SHELXL97 and PLATON (Spek, 1990)' _computing_structure_refinement 'LS in TEXSAN and SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'TEXSAN and SHELXS97 (Sheldrick, 1990)' _diffrn_ambient_temperature 296 _diffrn_measured_fraction_theta_full 0.939 _diffrn_measured_fraction_theta_max 0.939 _diffrn_measurement_device_type 'Rigaku AFC-5S' _diffrn_measurement_method '\w (rate 6\% min^-1^ in \w)' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'X-ray tube' _diffrn_radiation_type 'Mo K\a' _diffrn_radiation_wavelength 0.71069 _diffrn_reflns_av_R_equivalents 0.038 _diffrn_reflns_av_sigmaI/netI 0.046 _diffrn_reflns_limit_h_max 14 _diffrn_reflns_limit_h_min -14 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 19 _diffrn_reflns_limit_l_min -19 _diffrn_reflns_number 6671 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 25.00 _diffrn_reflns_theta_min 2.44 _diffrn_standards_decay_% 0.0 _diffrn_standards_interval_count 100 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.174 _exptl_absorpt_correction_type none _exptl_crystal_colour 'pale purple' _exptl_crystal_density_diffrn 1.212 _exptl_crystal_density_meas ? _exptl_crystal_description 'equant fragment' _exptl_crystal_F_000 736 _exptl_crystal_size_max 0.49 _exptl_crystal_size_mid 0.46 _exptl_crystal_size_min 0.43 _refine_diff_density_max 0.17 _refine_diff_density_min -0.17 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.00 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 230 _refine_ls_number_reflns 3338 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.00 _refine_ls_R_factor_all 0.069 _refine_ls_R_factor_gt 0.036 _refine_ls_shift/su_max 0.007 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.0449P)^2^+0.2687P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref 0.102 _reflns_number_gt 2291 _reflns_number_total 3338 _reflns_threshold_expression I>2\s(I) _cod_data_source_file bk1440.cif _cod_data_source_block default _cod_depositor_comments ; The following automatic conversions were performed: '_exptl_crystal_density_meas' value 'not measured' was changed to '?' - the value is perceived as not measured. Automatic conversion script Id: cif_fix_values 3008 2015-01-20 13:52:24Z robertas ; _cod_original_cell_volume 1887.7(11) _cod_original_sg_symbol_H-M 'P 21/c' _cod_database_code 2008317 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol S1 0.58729(4) 0.06174(5) 0.74345(3) 0.04701(17) Uani d . 1 . . S C1 0.74504(16) -0.1157(2) 0.60686(14) 0.0503(5) Uani d . 1 . . C C2 0.72171(19) -0.1758(3) 0.52980(17) 0.0686(7) Uani d . 1 . . C C3 0.6681(2) -0.1053(3) 0.46530(18) 0.0779(8) Uani d . 1 . . C C4 0.63956(17) 0.0300(3) 0.47446(14) 0.0661(7) Uani d . 1 . . C C4a 0.66479(15) 0.0935(2) 0.55094(12) 0.0467(5) Uani d . 1 . . C C4b 0.65217(14) 0.2352(2) 0.57719(13) 0.0460(5) Uani d . 1 . . C C5 0.61724(16) 0.3500(3) 0.53278(16) 0.0642(7) Uani d . 1 . . C C6 0.62284(18) 0.4742(3) 0.5726(2) 0.0747(8) Uani d . 1 . . C C7 0.66107(17) 0.4862(2) 0.65486(19) 0.0706(8) Uani d . 1 . . C C8 0.69480(15) 0.3709(2) 0.70092(15) 0.0518(6) Uani d . 1 . . C C8a 0.69084(13) 0.24697(18) 0.66100(12) 0.0389(5) Uani d . 1 . . C C9 0.72197(13) 0.10678(18) 0.69586(11) 0.0355(4) Uani d . 1 . . C C9a 0.71528(14) 0.0191(2) 0.61771(12) 0.0400(4) Uani d . 1 . . C C10 0.60844(19) -0.1122(2) 0.77642(16) 0.0676(7) Uani d . 1 . . C C1' 0.82497(14) 0.10247(17) 0.75993(11) 0.0340(4) Uani d . 1 . . C C2' 0.93987(14) 0.09829(17) 0.74344(11) 0.0336(4) Uani d . 1 . . C C3' 1.01436(16) 0.0794(2) 0.81363(13) 0.0463(5) Uani d . 1 . . C C4' 0.98570(18) 0.0794(2) 0.89469(13) 0.0539(6) Uani d . 1 . . C C5' 0.87668(18) 0.0983(2) 0.91006(12) 0.0556(6) Uani d . 1 . . C C6' 0.79977(16) 0.1076(2) 0.84371(12) 0.0484(5) Uani d . 1 . . C C7' 0.99826(14) 0.11489(19) 0.66084(11) 0.0357(4) Uani d . 1 . . C C8' 1.10499(15) 0.2032(2) 0.67705(13) 0.0525(5) Uani d . 1 . . C C9' 1.03370(18) -0.0251(2) 0.62924(14) 0.0547(5) Uani d . 1 . . C C10' 0.93138(15) 0.1906(2) 0.59147(12) 0.0484(5) Uani d . 1 . . C H1 0.7801 -0.1650 0.6506 0.060 Uiso calc R 1 . . H H2 0.7428 -0.2659 0.5216 0.082 Uiso calc R 1 . . H H3 0.6507 -0.1491 0.4148 0.093 Uiso calc R 1 . . H H4 0.6041 0.0780 0.4303 0.079 Uiso calc R 1 . . H H5 0.5906 0.3434 0.4773 0.077 Uiso calc R 1 . . H H6 0.6002 0.5522 0.5431 0.090 Uiso calc R 1 . . H H7 0.6645 0.5718 0.6800 0.085 Uiso calc R 1 . . H H8 0.7192 0.3779 0.7569 0.062 Uiso calc R 1 . . H H3' 1.0891 0.0658 0.8043 0.056 Uiso calc R 1 . . H H4' 1.0395 0.0667 0.9383 0.065 Uiso calc R 1 . . H H5' 0.8551 0.1047 0.9644 0.067 Uiso calc R 1 . . H H6' 0.7253 0.1182 0.8550 0.058 Uiso calc R 1 . . H H8'a 1.1352 0.2251 0.6248 0.079 Uiso calc R 1 . . H H8'b 1.1593 0.1531 0.7113 0.079 Uiso calc R 1 . . H H8'c 1.0864 0.2858 0.7050 0.079 Uiso calc R 1 . . H H9'a 0.9686 -0.0773 0.6120 0.082 Uiso calc R 1 . . H H9'b 1.0757 -0.0725 0.6732 0.082 Uiso calc R 1 . . H H9'c 1.0791 -0.0133 0.5828 0.082 Uiso calc R 1 . . H H10'a 0.9786 0.2107 0.5472 0.073 Uiso calc R 1 . . H H10'b 0.9032 0.2742 0.6130 0.073 Uiso calc R 1 . . H H10'c 0.8702 0.1347 0.5705 0.073 Uiso calc R 1 . . H H10a 0.6145 -0.1694 0.7284 0.101 Uiso calc R 1 . . H H10b 0.5464 -0.1415 0.8066 0.101 Uiso calc R 1 . . H H10c 0.6758 -0.1186 0.8119 0.101 Uiso calc R 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 S1 0.0334(2) 0.0478(3) 0.0606(4) 0.0022(2) 0.0093(2) 0.0073(3) C1 0.0470(11) 0.0451(12) 0.0594(14) -0.0065(9) 0.0085(10) -0.0059(10) C2 0.0607(14) 0.0658(16) 0.0813(19) -0.0185(12) 0.0199(13) -0.0297(15) C3 0.0594(15) 0.108(2) 0.0668(18) -0.0225(15) 0.0103(13) -0.0397(17) C4 0.0427(12) 0.109(2) 0.0456(14) -0.0103(13) -0.0054(10) -0.0020(14) C4a 0.0310(9) 0.0670(14) 0.0416(12) -0.0040(9) -0.0011(8) 0.0022(10) C4b 0.0266(9) 0.0586(13) 0.0523(13) 0.0015(8) -0.0006(8) 0.0154(10) C5 0.0354(11) 0.0815(18) 0.0747(17) 0.0041(11) -0.0037(11) 0.0322(15) C6 0.0369(11) 0.0646(17) 0.121(2) 0.0064(11) -0.0038(13) 0.0452(17) C7 0.0356(11) 0.0398(13) 0.136(3) 0.0010(9) 0.0019(13) 0.0099(14) C8 0.0328(10) 0.0438(12) 0.0782(16) 0.0006(9) -0.0009(10) 0.0001(11) C8a 0.0254(9) 0.0401(11) 0.0510(12) 0.0017(7) 0.0012(8) 0.0067(9) C9 0.0300(8) 0.0362(10) 0.0405(11) 0.0004(7) 0.0033(8) 0.0038(8) C9a 0.0305(9) 0.0447(11) 0.0448(12) -0.0065(8) 0.0023(8) -0.0007(9) C10 0.0571(13) 0.0535(13) 0.0948(19) 0.0032(11) 0.0261(13) 0.0232(13) C1' 0.0371(9) 0.0320(9) 0.0328(10) 0.0035(7) 0.0007(7) 0.0014(8) C2' 0.0368(9) 0.0292(9) 0.0345(10) 0.0021(7) -0.0008(7) 0.0010(8) C3' 0.0379(10) 0.0543(12) 0.0458(12) 0.0039(9) -0.0039(8) 0.0075(10) C4' 0.0582(13) 0.0625(14) 0.0390(13) -0.0047(11) -0.0117(10) 0.0073(11) C5' 0.0653(14) 0.0712(15) 0.0305(12) -0.0024(11) 0.0056(10) -0.0016(10) C6' 0.0449(11) 0.0612(13) 0.0393(12) 0.0028(9) 0.0056(9) -0.0011(10) C7' 0.0303(8) 0.0414(10) 0.0354(11) -0.0001(7) 0.0013(7) 0.0007(8) C8' 0.0406(10) 0.0639(14) 0.0531(13) -0.0098(10) 0.0031(9) 0.0009(11) C9' 0.0551(12) 0.0553(13) 0.0546(14) 0.0055(10) 0.0097(10) -0.0100(11) C10' 0.0409(10) 0.0630(13) 0.0417(12) -0.0032(10) 0.0055(9) 0.0121(10) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _diffrn_standard_refln_index_h _diffrn_standard_refln_index_k _diffrn_standard_refln_index_l -1 -1 1 -2 0 2 -1 0 2 loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C1' C2' C7' 130.98(15) yes C2' C1' C9 128.01(16) yes C1' C9 C8a 115.67(14) yes S1 C9 C9a 101.70(11) yes C2' C7' C10' 115.52(14) yes C2' C7' C9' 109.93(15) yes C3' C2' C7' 113.63(16) yes C6' C1' C9 114.94(15) yes C1' C9 C9a 121.83(14) yes S1 C9 C8a 99.44(11) yes C2' C7' C8' 109.26(15) yes C10 S1 C9 103.47(9) no C2 C1 C9a 118.8(2) no C6' C1' C2' 117.02(16) no C3 C2 C1 121.3(2) no C3' C2' C1' 115.37(17) no C2 C3 C4 120.8(2) no C4' C3' C2' 125.22(19) no C3 C4 C4a 118.8(2) no C4 C4a C9a 120.1(2) no C4 C4a C4b 131.1(2) no C9a C4a C4b 108.72(17) no C5 C4b C8a 119.9(2) no C5 C4b C4a 131.1(2) no C8a C4b C4a 108.78(16) no C5' C4' C3' 118.56(19) no C6 C5 C4b 118.5(2) no C6' C5' C4' 118.45(19) no C7 C6 C5 121.7(2) no C5' C6' C1' 124.70(18) no C6 C7 C8 120.5(2) no C10' C7' C9' 109.79(16) no C10' C7' C8' 103.92(15) no C9' C7' C8' 108.03(16) no C8 C8a C4b 121.44(18) no C8 C8a C9 128.84(18) no C4b C8a C9 109.71(16) no C8a C8 C7 117.9(2) no C9a C9 C8a 102.02(15) no C1' C9 S1 113.01(12) no C1 C9a C4a 120.18(19) no C1 C9a C9 130.14(18) no C4a C9a C9 109.58(17) no C8a C8 H8 121.0 no C7 C8 H8 121.0 no C7' C8' H8'a 109.5 no C7' C8' H8'b 109.5 no H8'a C8' H8'b 109.5 no C7' C8' H8'c 109.5 no H8'a C8' H8'c 109.5 no H8'b C8' H8'c 109.5 no C2 C1 H1 120.6 no C9a C1 H1 120.6 no C3 C2 H2 119.4 no C1 C2 H2 119.4 no C2 C3 H3 119.6 no C4 C3 H3 119.6 no C4' C3' H3' 117.4 no C2' C3' H3' 117.4 no C3 C4 H4 120.6 no C4a C4 H4 120.6 no C5' C4' H4' 120.7 no C3' C4' H4' 120.7 no C6 C5 H5 120.8 no C4b C5 H5 120.8 no C6' C5' H5' 120.8 no C4' C5' H5' 120.8 no C7 C6 H6 119.1 no C5 C6 H6 119.1 no C6 C7 H7 119.8 no C8 C7 H7 119.8 no C5' C6' H6' 117.6 no C1' C6' H6' 117.6 no C7' C9' H9'a 109.5 no C7' C9' H9'b 109.5 no H9'a C9' H9'b 109.5 no C7' C9' H9'c 109.5 no H9'a C9' H9'c 109.5 no H9'b C9' H9'c 109.5 no S1 C10 H10a 109.5 no S1 C10 H10b 109.5 no H10a C10 H10b 109.5 no S1 C10 H10c 109.5 no H10a C10 H10c 109.5 no H10b C10 H10c 109.5 no C7' C10' H10'a 109.5 no C7' C10' H10'b 109.5 no H10'a C10' H10'b 109.5 no C7' C10' H10'c 109.5 no H10'a C10' H10'c 109.5 no H10'b C10' H10'c 109.5 no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag S1 C9 . 1.8872(19) yes C1' C2' . 1.423(2) yes C2' C3' . 1.405(2) yes C4' C5' . 1.361(3) yes C1 C10 . 3.273(4) yes C3' H8'b . 2.58 yes C4a H10'c . 2.50 yes C8' H3' . 2.47 n S1 C10 . 1.798(2) yes C1' C6' . 1.400(3) yes C3' C4' . 1.369(3) yes C5' C6' . 1.367(3) yes C9a C10' . 3.145(3) yes C9a H10'c . 2.35 yes C10' C9a . 3.145(3) n C1 C2 . 1.383(3) no C1 C9a . 1.383(3) no C1' C9 . 1.557(2) no C2 C3 . 1.371(4) no C2' C7' . 1.550(3) no C3 C4 . 1.380(4) no C4 C4a . 1.393(3) no C4a C9a . 1.401(3) no C4a C4b . 1.462(3) no C4b C5 . 1.383(3) no C4b C8a . 1.400(3) no C5 C6 . 1.375(4) no C6 C7 . 1.375(4) no C7 C8 . 1.396(3) no C7' C10' . 1.523(2) no C7' C9' . 1.533(3) no C7' C8' . 1.554(2) no C8a C8 . 1.373(3) no C8a C9 . 1.521(2) no C9 C9a . 1.519(3) no C1 H1 . 0.9300 no C2 H2 . 0.9300 no C3 H3 . 0.9300 no C3' H3' . 0.9300 no C4 H4 . 0.9300 no C4' H4' . 0.9300 no C5 H5 . 0.9300 no C5' H5' . 0.9300 no C6 H6 . 0.9300 no C6' H6' . 0.9300 no C7 H7 . 0.9300 no C8 H8 . 0.9300 no C8' H8'a . 0.9600 no C8' H8'b . 0.9600 no C8' H8'c . 0.9600 no C9' H9'a . 0.9600 no C9' H9'b . 0.9600 no C9' H9'c . 0.9600 no C10 H10a . 0.9600 no C10 H10b . 0.9600 no C10 H10c . 0.9600 no C10' H10'a . 0.9600 no C10' H10'b . 0.9600 no C10' H10'c . 0.9600 no loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag S1 C9 C9a C4a 91.53(15) yes C6' C1' C9 S1 -18.4(2) n S1 C9 C9a C1 -84.8(2) n C1' C9 C9a C1 41.9(3) n C3' C4' C5' C6' 4.2(3) n C6' C1' C2' C3' 9.1(2) n C4' C5' C6' C1' -1.6(3) n C9 C1' C2' C7' 8.8(3) n C9 C1' C2' C3' -173.07(17) n C4b C8a C9 C1' 143.98(15) yes C2' C1' C9 S1 163.71(15) n C8 C8a C9 S1 83.94(19) n C8 C8a C9 C1' -37.4(3) n C1' C2' C3' C4' -7.2(3) n C2' C3' C4' C5' 0.4(3) n C2' C1' C6' C5' -5.3(3) n C9 C1' C6' C5' 176.56(19) n C9a C1 C2 C3 -1.3(3) no C6' C1' C2' C7' -169.07(18) no C1 C2 C3 C4 2.6(4) no C7' C2' C3' C4' 171.32(19) no C2 C3 C4 C4a -0.9(3) no C3 C4 C4a C9a -1.8(3) no C3 C4 C4a C4b 175.3(2) no C4 C4a C4b C5 -4.1(4) no C9a C4a C4b C5 173.23(19) no C4 C4a C4b C8a -179.62(19) no C9a C4a C4b C8a -2.3(2) no C8a C4b C5 C6 0.7(3) no C4a C4b C5 C6 -174.3(2) no C4b C5 C6 C7 -0.6(3) no C5 C6 C7 C8 -0.5(3) no C3' C2' C7' C10' -156.14(17) no C1' C2' C7' C10' 22.1(3) no C3' C2' C7' C9' 78.9(2) no C1' C2' C7' C9' -102.9(2) no C3' C2' C7' C8' -39.4(2) no C1' C2' C7' C8' 138.75(19) no C5 C4b C8a C8 0.2(3) no C4a C4b C8a C8 176.28(16) no C5 C4b C8a C9 178.97(16) no C4a C4b C8a C9 -4.9(2) no C4b C8a C8 C7 -1.3(3) no C9 C8a C8 C7 -179.79(17) no C6 C7 C8 C8a 1.4(3) no C8 C8a C9 C9a -171.84(18) no C4b C8a C9 C9a 9.50(18) no C4b C8a C9 S1 -94.72(14) no C6' C1' C9 C9a -139.96(18) no C2' C1' C9 C9a 42.2(3) no C6' C1' C9 C8a 95.3(2) no C2' C1' C9 C8a -82.6(2) no C10 S1 C9 C9a 69.01(15) no C10 S1 C9 C8a 173.49(13) no C10 S1 C9 C1' -63.30(15) no C2 C1 C9a C4a -1.5(3) no C2 C1 C9a C9 174.59(18) no C4 C4a C9a C1 3.1(3) no C4b C4a C9a C1 -174.64(16) no C4 C4a C9a C9 -173.74(16) no C4b C4a C9a C9 8.6(2) no C8a C9 C9a C1 172.73(18) no C8a C9 C9a C4a -10.91(18) no C1' C9 C9a C4a -141.71(16) no loop_ _cod_related_entry_id _cod_related_entry_database _cod_related_entry_code 1 ChemSpider 21136504