#------------------------------------------------------------------------------ #$Date: 2012-02-03 17:16:24 +0000 (Fri, 03 Feb 2012) $ #$Revision: 32112 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/83/2008376.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2008376 loop_ _publ_author_name 'Danilovski, Aleksandar' 'Vinkovi\'c, Mladen' 'Herak, Jure J.' _publ_section_title ; Two novel optically active penam derivatives ; _journal_issue 4 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 656 _journal_page_last 659 _journal_volume 55 _journal_year 1999 _chemical_formula_moiety 'C15 H16 N2 O S' _chemical_formula_sum 'C15 H16 N2 O S' _chemical_formula_weight 272.36 _chemical_name_systematic ; (5R)-3-benzylimino-2-isopropylidene-4-thia-1-azabicyclo[3.2.0]heptan-7-one ; _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _cell_angle_alpha 90.00 _cell_angle_beta 90.64(8) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 5.295(6) _cell_length_b 11.559(8) _cell_length_c 11.698(11) _cell_measurement_reflns_used 19 _cell_measurement_temperature 293 _cell_measurement_theta_max 30 _cell_measurement_theta_min 20 _cell_volume 715.9(12) _computing_cell_refinement STADI4 _computing_data_collection 'STADI4 (Stoe & Cie, 1996a)' _computing_data_reduction 'X-RED (Stoe & Cie, 1996b)' _computing_molecular_graphics 'PLATON93 (Spek, 1993a) and PLUTON93 (Spek, 1993b)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997a)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997b)' _diffrn_ambient_temperature 293 _diffrn_measurement_device 'Philips PW1100 upgraded by Stoe & Cie' _diffrn_measurement_method '2\q/\w scan' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed X-ray tube' _diffrn_radiation_type 'Mo K\a' _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.109 _diffrn_reflns_av_sigmaI/netI 0.125 _diffrn_reflns_limit_h_max 6 _diffrn_reflns_limit_h_min -6 _diffrn_reflns_limit_k_max 14 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 14 _diffrn_reflns_limit_l_min -14 _diffrn_reflns_number 3265 _diffrn_reflns_theta_max 27 _diffrn_reflns_theta_min 2.5 _diffrn_standards_decay_% 2.7 _diffrn_standards_interval_time 60 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.220 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.263 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 288 _exptl_crystal_size_max 0.53 _exptl_crystal_size_mid 0.45 _exptl_crystal_size_min 0.15 _refine_diff_density_max 0.256 _refine_diff_density_min -0.304 _refine_ls_abs_structure_details 'retention of (R)-configuration at C5 atom assumed (Flack, 1983)' _refine_ls_abs_structure_Flack 0.07(19) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_all 0.992 _refine_ls_goodness_of_fit_obs 1.164 _refine_ls_hydrogen_treatment 'only coordinates of H atoms refined' _refine_ls_matrix_type full _refine_ls_number_parameters 188 _refine_ls_number_reflns 1630 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.021 _refine_ls_restrained_S_obs 1.163 _refine_ls_R_factor_all 0.128 _refine_ls_R_factor_obs 0.061 _refine_ls_shift/esd_max <0.001 _refine_ls_shift/esd_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_scheme 'calc w = 1/[\s^2^(Fo^2^)+(0.0680P)^2^+0.0338P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_wR_factor_all 0.143 _refine_ls_wR_factor_obs 0.115 _reflns_number_observed 886 _reflns_number_total 1633 _reflns_observed_criterion I>2\s(I) _[local]_cod_data_source_file ka1291.cif _[local]_cod_data_source_block II _[local]_cod_cif_authors_sg_H-M 'P 21' _cod_depositor_comments ; The following automatic conversions were performed: '_atom_site_thermal_displace_type' tag value 'Uij' was replaced with 'Uani' value 19 times. Automatic conversion script Id: cif_fix_values 1646 2011-03-28 12:23:43Z adriana ; _cod_database_code 2008376 loop_ _symmetry_equiv_pos_as_xyz x,y,z -x,y+1/2,-z loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 _atom_site_aniso_type_symbol N1 0.064(3) 0.046(3) 0.062(3) 0.002(3) 0.000(2) 0.002(2) N C2 0.049(3) 0.043(3) 0.056(3) 0.005(3) -0.006(2) -0.006(3) C C21 0.075(4) 0.046(3) 0.062(3) 0.002(3) 0.003(3) -0.005(3) C C22 0.136(8) 0.060(4) 0.074(5) -0.005(5) -0.002(4) 0.017(4) C C23 0.119(6) 0.059(4) 0.075(5) -0.031(5) -0.001(4) -0.004(4) C C3 0.048(3) 0.043(3) 0.060(3) 0.002(3) 0.006(3) -0.007(3) C N31 0.066(3) 0.051(3) 0.058(3) -0.003(3) -0.001(2) 0.000(2) N C32 0.082(4) 0.051(4) 0.064(3) -0.002(3) -0.003(3) 0.008(3) C C33 0.053(3) 0.053(3) 0.061(3) 0.016(3) -0.001(3) -0.002(3) C C34 0.075(4) 0.054(3) 0.058(3) 0.013(3) 0.004(3) 0.009(3) C C35 0.093(5) 0.070(4) 0.049(3) 0.025(4) -0.010(3) 0.001(3) C C36 0.073(4) 0.098(6) 0.075(5) 0.015(5) -0.025(3) -0.029(4) C C37 0.061(4) 0.090(5) 0.073(4) -0.013(4) 0.004(3) -0.012(4) C C38 0.062(4) 0.071(4) 0.056(4) -0.004(4) 0.006(3) -0.006(3) C S4 0.0752(10) 0.0640(9) 0.0619(8) -0.0185(9) 0.0069(6) -0.0002(8) S C5 0.051(3) 0.057(4) 0.088(4) -0.002(3) 0.004(3) -0.007(3) C C6 0.069(4) 0.070(4) 0.068(4) -0.013(4) -0.012(3) -0.006(3) C C7 0.065(4) 0.060(4) 0.062(3) 0.001(3) 0.000(3) -0.013(3) C O71 0.102(3) 0.076(3) 0.073(2) -0.018(3) 0.018(2) -0.019(2) O loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_type_symbol N1 -0.1436(8) -0.6238(4) -0.7943(4) 0.0572(12) Uani ? ? N C2 0.0221(9) -0.5614(5) -0.7210(4) 0.0494(13) Uani ? ? C C21 0.1548(12) -0.4682(5) -0.7565(5) 0.061(2) Uani ? ? C C22 0.120(2) -0.4258(7) -0.8781(5) 0.090(2) Uani ? ? C C23 0.3451(17) -0.4040(7) -0.6875(6) 0.084(2) Uani ? ? c C3 0.0316(9) -0.6179(5) -0.6071(4) 0.0500(13) Uani ? ? C N31 0.1808(9) -0.5902(4) -0.5274(4) 0.0581(12) Uani ? ? N C32 0.1818(12) -0.6557(5) -0.4210(4) 0.066(2) Uani ? ? C C33 0.3571(10) -0.6043(5) -0.3319(4) 0.0557(14) Uani ? ? C C34 0.3368(12) -0.6383(6) -0.2174(4) 0.062(2) Uani ? ? C C35 0.5045(13) -0.5980(6) -0.1369(5) 0.071(2) Uani ? ? C C36 0.6924(13) -0.5222(7) -0.1658(6) 0.082(2) Uani ? ? C C37 0.7126(12) -0.4868(7) -0.2782(6) 0.075(2) Uani ? ? C C38 0.5485(11) -0.5278(6) -0.3590(5) 0.063(2) Uani ? ? C S4 -0.1839(3) -0.73824(14) -0.60190(11) 0.0670(5) Uani ? ? S C5 -0.3223(10) -0.7024(5) -0.7397(5) 0.065(2) Uani ? ? C C6 -0.2829(12) -0.7902(6) -0.8396(5) 0.069(2) Uani ? ? C C7 -0.0715(11) -0.7081(5) -0.8746(5) 0.062(2) Uani ? ? C O71 0.1029(9) -0.7109(4) -0.9379(3) 0.0835(14) Uani ? ? O H5 -0.4945(10) -0.6718(5) -0.7354(5) 0.065 Uiso ? ? H H6A -0.2262(12) -0.8663(6) -0.8156(5) 0.122 Uiso ? ? H H6B -0.4227(12) -0.7948(6) -0.8937(5) 0.061 Uiso ? ? H H32A 0.2333(12) -0.7346(5) -0.4365(4) 0.092 Uiso ? ? H H32B 0.0118(12) -0.6579(5) -0.3911(4) 0.092 Uiso ? ? H H34 0.2086(12) -0.6885(6) -0.1960(4) 0.076 Uiso ? ? H H35 0.4908(13) -0.6224(6) -0.0615(5) 0.048 Uiso ? ? H H36 0.8049(13) -0.4949(7) -0.1104(6) 0.065 Uiso ? ? H H37 0.8383(12) -0.4349(7) -0.2987(6) 0.060 Uiso ? ? H H38 0.5656(11) -0.5039(6) -0.4344(5) 0.073 Uiso ? ? H H22A 0.226(2) -0.3596(7) -0.8903(5) 0.176 Uiso ? ? H H22B -0.053(2) -0.4046(7) -0.8909(5) 0.145 Uiso ? ? H H22C 0.166(2) -0.4862(7) -0.9303(5) 0.194 Uiso ? ? H H23A 0.4120(17) -0.3416(7) -0.7321(6) 0.388 Uiso ? ? H H23B 0.4796(17) -0.4554(7) -0.6656(6) 0.244 Uiso ? ? H H23C 0.2670(17) -0.3734(7) -0.6203(6) 0.235 Uiso ? ? H loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_1 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag S4 C3 ? ? 1.801(6) ? S4 C5 ? ? 1.811(6) ? O71 C7 ? ? 1.190(6) ? N1 C7 ? ? 1.409(8) yes N1 C2 ? ? 1.417(7) ? N1 C5 ? ? 1.464(7) ? N31 C3 ? ? 1.257(6) yes N31 C32 ? ? 1.457(7) yes C3 C2 ? ? 1.484(7) yes C2 C21 ? ? 1.354(8) ? C5 C6 ? ? 1.563(8) ? C6 C7 ? ? 1.527(9) ? C32 C33 ? ? 1.510(7) ? C33 C38 ? ? 1.384(8) ? C33 C34 ? ? 1.402(7) ? C34 C35 ? ? 1.369(8) ? C35 C36 ? ? 1.371(10) ? C36 C37 ? ? 1.383(10) ? C37 C38 ? ? 1.361(9) ? C21 C23 ? ? 1.483(9) ? C21 C22 ? ? 1.513(8) ? loop_ _atom_type_symbol _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C 0.0033 0.0016 ' International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H 0.0000 0.0000 ' International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N 0.0061 0.0033 ' International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O 0.0106 0.0060 ' International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S 0.1246 0.1234 ' International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _diffrn_standard_refln_index_h _diffrn_standard_refln_index_k _diffrn_standard_refln_index_l 2 4 0 0 6 0 0 4 6 loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C3 S4 C5 92.5(3) yes C7 N1 C2 125.8(4) yes C7 N1 C5 92.5(5) yes C2 N1 C5 116.8(4) yes C3 N31 C32 119.9(5) ? N31 C3 C2 124.7(5) ? N31 C3 S4 124.4(4) ? C2 C3 S4 110.8(4) yes C21 C2 N1 122.6(5) ? C21 C2 C3 127.8(5) ? N1 C2 C3 109.5(5) ? N1 C5 C6 89.1(4) yes N1 C5 S4 105.9(4) yes C6 C5 S4 117.4(5) yes C7 C6 C5 84.4(4) yes O71 C7 N1 130.7(6) ? O71 C7 C6 136.5(6) ? N1 C7 C6 92.7(4) yes N31 C32 C33 112.4(5) ? C38 C33 C34 117.5(5) ? C38 C33 C32 122.7(5) ? C34 C33 C32 119.7(5) ? C35 C34 C33 120.4(6) ? C34 C35 C36 121.0(5) ? C35 C36 C37 119.2(6) ? C38 C37 C36 120.1(7) ? C37 C38 C33 121.8(6) ? C2 C21 C23 125.7(6) ? C2 C21 C22 119.3(6) ? C23 C21 C22 115.0(6) ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C32 N31 C3 C2 -176.9(5) ? C32 N31 C3 S4 -1.6(7) ? C5 S4 C3 N31 175.9(5) ? C5 S4 C3 C2 -8.2(4) yes C7 N1 C2 C21 80.3(7) ? C5 N1 C2 C21 -164.7(5) ? C7 N1 C2 C3 -96.9(6) yes C5 N1 C2 C3 18.1(6) yes N31 C3 C2 C21 -4.7(8) ? S4 C3 C2 C21 179.4(5) ? N31 C3 C2 N1 172.3(5) ? S4 C3 C2 N1 -3.5(5) yes C7 N1 C5 C6 -9.3(5) ? C2 N1 C5 C6 -141.9(5) ? C7 N1 C5 S4 109.0(4) ? C2 N1 C5 S4 -23.6(6) ? C3 S4 C5 N1 17.0(4) yes C3 S4 C5 C6 114.4(4) yes N1 C5 C6 C7 8.6(4) ? S4 C5 C6 C7 -98.8(5) ? C2 N1 C7 O71 -40.3(9) ? C5 N1 C7 O71 -166.2(7) ? C2 N1 C7 C6 135.5(5) ? C5 N1 C7 C6 9.5(5) ? C5 C6 C7 O71 166.3(7) ? C5 C6 C7 N1 -9.0(4) ? C3 N31 C32 C33 -175.3(5) ? N31 C32 C33 C38 -18.7(7) yes N31 C32 C33 C34 164.6(5) ? C38 C33 C34 C35 -1.1(8) ? C32 C33 C34 C35 175.9(5) ? C33 C34 C35 C36 1.2(9) ? C34 C35 C36 C37 -0.4(10) ? C35 C36 C37 C38 -0.6(11) ? C36 C37 C38 C33 0.7(11) ? C34 C33 C38 C37 0.1(9) ? C32 C33 C38 C37 -176.7(6) ? N1 C2 C21 C23 -175.3(6) ? C3 C2 C21 C23 1.5(10) ? N1 C2 C21 C22 2.0(8) ? C3 C2 C21 C22 178.7(6) ?