#------------------------------------------------------------------------------ #$Date: 2013-12-28 13:58:47 +0000 (Sat, 28 Dec 2013) $ #$Revision: 91933 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/83/2008392.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2008392 loop_ _publ_author_name 'Nakasa, Kazuyuki' 'Nakagawa, Hiroo' 'Kani, Yoshiyuki' 'Tsuchimoto, Masanobu' 'Ohba, Shigeru' _publ_section_title ; Copper(II) 2-thiopheneglyoxylate adducts with pyridine derivatives ; _journal_issue 4 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 513 _journal_page_last 517 _journal_volume 55 _journal_year 1999 _chemical_formula_iupac '[Cu2 (C6 H3 O3 S)4 (C6 H7 N)2], H2 O' _chemical_formula_moiety '(C36 H26 Cu2 N2 O12 S4), H2 O' _chemical_formula_structural '(Cu (C6 H3 O3 S)2 (C6 H7 N))2 (H2 O)' _chemical_formula_sum 'C36 H28 Cu2 N2 O13 S4' _chemical_formula_weight 951.96 _chemical_name_systematic ; catena-Poly[bis(2-thiopheneglyoxylato-O^1^,O^2^)copper(II) -\m-(2-thiopheneglyoxylato-O^1^:O^1^,O^2^)-bis(3-methylpyridine)copper(II) -\m-(2-thiopheneglyoxylato-O^1^,O^2^:O^1^)monohydrate ; _space_group_IT_number 15 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-C 2yc' _symmetry_space_group_name_H-M 'C 1 2/c 1' _atom_type_scat_source IntTabIV _cell_angle_alpha 90. _cell_angle_beta 118.470(10) _cell_angle_gamma 90. _cell_formula_units_Z 4 _cell_length_a 20.160(3) _cell_length_b 9.000(2) _cell_length_c 24.497(3) _cell_measurement_reflns_used 25 _cell_measurement_temperature 298 _cell_measurement_theta_max 15 _cell_measurement_theta_min 10 _cell_volume 3907.2(12) _computing_cell_refinement 'AFC/MSC Diffractometer Control System' _computing_data_collection 'AFC/MSC Diffractometer Control System (Rigaku Corporation, 1993)' _computing_data_reduction 'local programs' _computing_molecular_graphics CRYSTAN-GM _computing_publication_material CRYSTAN-GM _computing_structure_refinement CRYSTAN-GM _computing_structure_solution 'CRYSTAN-GM (Edwards et al., 1996)' _diffrn_measurement_device_type 'Rigaku AFC-5' _diffrn_measurement_method \w _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.020 _diffrn_reflns_limit_h_max 26 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 32 _diffrn_reflns_limit_l_min -32 _diffrn_reflns_number 4934 _diffrn_reflns_theta_max 27.5 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 100 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 1.370 _exptl_absorpt_correction_T_max 0.673 _exptl_absorpt_correction_T_min 0.582 _exptl_absorpt_correction_type integration _exptl_absorpt_process_details '(Coppens et al., 1965)' _exptl_crystal_colour 'dark green' _exptl_crystal_density_diffrn 1.618 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 1936 _exptl_crystal_size_max 0.55 _exptl_crystal_size_mid 0.30 _exptl_crystal_size_min 0.20 _refine_diff_density_max 0.52 _refine_diff_density_min -0.69 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_obs 1.643 _refine_ls_hydrogen_treatment 'H atoms riding' _refine_ls_number_parameters 264 _refine_ls_number_reflns 3347 _refine_ls_R_factor_obs 0.052 _refine_ls_shift/esd_max 0.03 _refine_ls_shift/esd_mean 0.0039 _refine_ls_structure_factor_coef F _refine_ls_weighting_details 'w = 1/[\s^2^(F) + 0.000225F^2^]' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_obs 0.050 _reflns_number_observed 3347 _reflns_number_total 4481 _reflns_threshold_expression '|F~o~| > 3\s(|F~o~|)' _[local]_cod_data_source_file oa1077.cif _[local]_cod_data_source_block II _[local]_cod_cif_authors_sg_H-M 'C 2/c' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_atom_site_thermal_displace_type' tag value 'Uij' was replaced with 'Uani' value 30 times. Automatic conversion script Id: cif_fix_values 1646 2011-03-28 12:23:43Z adriana The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2008392 loop_ _symmetry_equiv_pos_as_xyz +x,+y,+z -x,+y,1/2-z -x,-y,-z +x,-y,1/2+z 1/2+x,1/2+y,+z 1/2-x,1/2+y,1/2-z 1/2-x,1/2-y,-z 1/2+x,1/2-y,1/2+z loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Cu1 0.0345(4) 0.0335(4) 0.0449(4) -.0026(3) 0.0194(3) -.0026(3) Cu2 0.0397(4) 0.0361(4) 0.0700(6) 0.0017(3) 0.0325(4) 0.0071(4) S3 0.0640(10) 0.0550(10) 0.0560(10) -0.0120(10) 0.0140(10) -0.0080(10) S4 0.0960(10) 0.1020(10) 0.0690(10) -0.0070(10) 0.0280(10) -0.0110(10) O5 0.036(2) 0.039(2) 0.053(2) -0.0020(10) 0.0180(10) 0.0020(10) O6 0.050(2) 0.063(2) 0.057(2) 0.004(2) 0.003(2) 0.002(2) O7 0.038(2) 0.048(2) 0.049(2) 0.0020(10) 0.0160(10) -0.0050(10) O8 0.047(2) 0.083(2) 0.056(2) -0.017(2) 0.030(2) -0.009(2) O9 0.039(2) 0.046(2) 0.054(2) -0.0030(10) 0.027(2) 0.0010(10) O10 0.068(2) 0.070(2) 0.076(2) -0.001(2) 0.053(2) 0.004(2) O11 0.184(7) 0.063(4) 0.068(4) 0.000(2) 0.022(4) 0.000(2) N12 0.043(2) 0.038(2) 0.077(3) 0.002(2) 0.036(2) 0.007(2) C13 0.045(3) 0.048(3) 0.049(3) 0.000(2) 0.025(2) 0.007(2) C14 0.042(2) 0.045(3) 0.042(2) -0.002(2) 0.024(2) 0.001(2) C15 0.051(3) 0.044(2) 0.042(3) -0.003(2) 0.023(2) 0.001(2) C16 0.075(2) 0.0440(10) 0.055(2) -0.0060(10) 0.0360(10) -0.0060(10) C17 0.110(5) 0.051(3) 0.078(4) -0.009(3) 0.053(4) -0.009(3) C18 0.092(4) 0.083(4) 0.065(4) -0.034(4) 0.024(3) -0.019(3) C19 0.044(3) 0.040(2) 0.056(3) 0.008(2) 0.031(2) 0.008(2) C20 0.060(3) 0.043(3) 0.061(3) 0.012(2) 0.040(3) 0.011(2) C21 0.066(3) 0.051(3) 0.059(3) 0.014(2) 0.031(3) 0.008(3) C22 0.090(4) 0.069(4) 0.035(3) 0.024(3) 0.021(3) 0.003(3) C23 0.194(9) 0.123(7) 0.096(6) 0.061(6) 0.104(7) 0.028(5) C24 0.127(6) 0.108(6) 0.049(4) 0.018(5) 0.013(4) -0.016(4) C25 0.052(3) 0.050(3) 0.089(4) -0.001(2) 0.043(3) -0.001(3) C26 0.058(3) 0.055(3) 0.104(5) 0.011(3) 0.049(3) 0.005(3) C27 0.067(3) 0.048(3) 0.108(5) 0.015(3) 0.040(3) 0.009(3) C28 0.059(3) 0.048(3) 0.081(4) 0.003(2) 0.032(3) 0.009(3) C29 0.052(3) 0.042(3) 0.079(3) 0.001(2) 0.035(3) 0.007(2) C30 0.134(6) 0.061(4) 0.101(5) 0.008(4) 0.063(4) 0.027(4) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_occupancy Cu1 0.25 0.25 0.50 0.0465(3) Uani 1.000 Cu2 0.50 0.50 0.50 0.0564(4) Uani 1.000 S3 0.43150(10) 0.6639(2) 0.66976(9) 0.0735(9) Uani 0.688 S4 0.22290(10) 0.2579(2) 0.31081(8) 0.1094(9) Uani 1.000 O5 0.3498(2) 0.2290(3) 0.56870(10) 0.0510(10) Uani 1.000 O6 0.4394(2) 0.3552(4) 0.6482(2) 0.066(2) Uani 1.000 O7 0.2626(2) 0.4652(3) 0.53370(10) 0.0550(10) Uani 1.000 O8 0.2919(2) 0.3237(4) 0.43440(10) 0.076(2) Uani 1.000 O9 0.4011(2) 0.4387(3) 0.49220(10) 0.0550(10) Uani 1.000 O10 0.4270(2) 0.4316(4) 0.3934(2) 0.084(2) Uani 1.000 O11 0.00 0.3486(6) 0.25 0.130(4) Uani 1.000 N12 0.4618(2) 0.7070(4) 0.4778(2) 0.062(2) Uani 1.000 C13 0.3776(2) 0.3436(5) 0.6015(2) 0.054(2) Uani 1.000 C14 0.3254(2) 0.4830(5) 0.5788(2) 0.051(2) Uani 1.000 C15 0.3491(2) 0.6256(5) 0.6088(2) 0.054(2) Uani 1.000 C16 0.2942(2) 0.7666(3) 0.58210(10) 0.0740(10) Uani 1.833 C17 0.3455(4) 0.8834(6) 0.6266(3) 0.101(3) Uani 1.000 C18 0.4133(4) 0.8356(7) 0.6705(3) 0.103(3) Uani 1.000 C19 0.3518(2) 0.3828(5) 0.4430(2) 0.053(2) Uani 1.000 C20 0.3659(3) 0.3845(5) 0.3854(2) 0.062(2) Uani 1.000 C21 0.3096(3) 0.3296(5) 0.3260(2) 0.068(2) Uani 1.000 C22 0.3240(3) 0.3275(6) 0.2716(2) 0.076(3) Uani 1.000 C23 0.2568(6) 0.2663(9) 0.2232(4) 0.154(6) Uani 1.000 C24 0.2015(4) 0.2250(8) 0.2357(3) 0.118(4) Uani 1.000 C25 0.4291(3) 0.7741(5) 0.5076(3) 0.078(3) Uani 1.000 C26 0.3979(3) 0.9136(6) 0.4911(3) 0.086(3) Uani 1.000 C27 0.3988(3) 0.9833(6) 0.4416(3) 0.088(3) Uani 1.000 C28 0.4328(3) 0.9176(6) 0.4099(3) 0.073(3) Uani 1.000 C29 0.4641(3) 0.7770(5) 0.4302(2) 0.068(2) Uani 1.000 C30 0.4376(4) 0.9910(7) 0.3573(3) 0.110(4) Uani 1.000 H11 -0.01270 0.30407 0.21060 0.20 Uiso 1.000 H16 0.24389 0.77480 0.54809 0.20 Uiso 0.500 H17 0.33084 0.98575 0.62357 0.20 Uiso 1.000 H18 0.44904 0.90196 0.70111 0.20 Uiso 1.000 H22 0.36864 0.36002 0.27029 0.20 Uiso 1.000 H23 0.25187 0.25454 0.18246 0.20 Uiso 1.000 H24 0.15503 0.18292 0.20459 0.20 Uiso 1.000 H25 0.42712 0.72328 0.54133 0.20 Uiso 1.000 H26 0.37615 0.96107 0.51386 0.20 Uiso 1.000 H27 0.39093 1.06572 0.43019 0.20 Uiso 1.000 H29 0.48849 0.72860 0.40965 0.20 Uiso 1.000 H30A 0.49025 0.99923 0.36920 0.20 Uiso 1.000 H30B 0.41365 0.92503 0.32250 0.20 Uiso 1.000 H30C 0.41595 1.08753 0.34290 0.20 Uiso 1.000 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_1 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Cu1 O5 . . 1.920(4) yes Cu1 O5 . 7_556 1.920(4) no Cu1 O7 . . 2.073(4) yes Cu1 O7 . 7_556 2.073(4) no Cu1 O8 . . 2.243(4) yes Cu1 O8 . 7_556 2.243(4) no Cu2 O9 . . 1.988(4) yes Cu2 O9 . 3_666 1.988(4) no Cu2 O10 . . 2.388(4) yes Cu2 O10 . 3_666 2.388(4) no Cu2 N12 . . 1.990(4) yes Cu2 N12 . 3_666 1.990(4) no S3 C15 . . 1.656(5) no S3 C18 . . 1.590(7) no S4 C21 . . 1.729(6) no S4 C24 . . 1.704(7) no O5 C13 . . 1.263(6) yes O6 C13 . . 1.231(6) yes O7 C14 . . 1.231(5) yes O8 C19 . . 1.243(6) yes O9 C19 . . 1.246(6) yes O10 C20 . . 1.226(6) yes N12 C25 . . 1.338(7) no N12 C29 . . 1.344(7) no C13 C14 . . 1.560(7) no C14 C15 . . 1.443(6) no C15 C16 . . 1.604(5) no C16 C17 . . 1.512(7) no C17 C18 . . 1.345(9) no C19 C20 . . 1.567(7) no C20 C21 . . 1.440(7) no C21 C22 . . 1.493(8) no C22 C23 . . 1.420(11) no C23 C24 . . 1.341(13) no C25 C26 . . 1.376(8) no C26 C27 . . 1.373(9) no C27 C28 . . 1.389(9) no C28 C29 . . 1.396(7) no C28 C30 . . 1.492(9) no O11 H11 . . 0.960 no O11 H11 . 2_555 0.960 no C16 H16 . . 0.960 no C17 H17 . . 0.960 no C18 H18 . . 0.961 no C22 H22 . . 0.960 no C23 H23 . . 0.960 no C24 H24 . . 0.960 no C25 H25 . . 0.961 no C26 H26 . . 0.960 no C27 H27 . . 0.781 no C29 H29 . . 0.961 no C30 H30A . . 0.959 no C30 H30B . . 0.959 no C30 H30C . . 0.961 no loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag O5 Cu1 O5 . 7_556 180.0 no O5 Cu1 O7 . . 82.2(2) yes O5 Cu1 O7 . 7_556 97.8(2) no O5 Cu1 O8 . . 93.5(2) yes O5 Cu1 O8 . 7_556 86.5(2) no O5 Cu1 O7 7_556 . 97.8(2) no O5 Cu1 O7 7_556 7_556 82.2(2) no O5 Cu1 O8 7_556 . 86.5(2) no O5 Cu1 O8 7_556 7_556 93.5(2) no O7 Cu1 O7 . 7_556 180.0 no O7 Cu1 O8 . . 89.6(2) yes O7 Cu1 O8 . 7_556 90.4(2) no O7 Cu1 O8 7_556 . 90.4(2) no O7 Cu1 O8 7_556 7_556 89.6(2) no O8 Cu1 O8 . 7_556 180.0 no O9 Cu2 O9 . 3_666 180.0 no O9 Cu2 O10 . . 75.9(2) yes O9 Cu2 O10 . 3_666 104.1(2) no O9 Cu2 N12 . . 89.6(2) yes O9 Cu2 N12 . 3_666 90.4(2) no O9 Cu2 O10 3_666 . 104.1(2) no O9 Cu2 O10 3_666 3_666 75.9(2) no O9 Cu2 N12 3_666 . 90.4(2) no O9 Cu2 N12 3_666 3_666 89.6(2) no O10 Cu2 O10 . 3_666 180.0 no O10 Cu2 N12 . . 89.2(2) yes O10 Cu2 N12 . 3_666 90.8(2) no O10 Cu2 N12 3_666 . 90.8(2) no O10 Cu2 N12 3_666 3_666 89.2(2) no N12 Cu2 N12 . 3_666 180.0 no C15 S3 C18 . . 94.3(3) no C21 S4 C24 . . 90.4(4) no Cu1 O5 C13 . . 116.0(3) yes Cu1 O5 C13 7_556 . 116.0(3) no Cu1 O7 C14 . . 110.9(3) yes Cu1 O7 C14 7_556 . 110.9(3) no Cu1 O8 C19 . . 132.3(3) yes Cu1 O8 C19 7_556 . 132.3(3) no Cu2 O9 C19 . . 120.4(3) yes Cu2 O9 C19 3_666 . 120.4(3) no Cu2 O10 C20 . . 108.2(3) yes Cu2 O10 C20 3_666 . 108.2(3) no Cu2 N12 C25 . . 120.0(4) no Cu2 N12 C29 . . 120.4(3) no Cu2 N12 C25 3_666 . 120.0(4) no Cu2 N12 C29 3_666 . 120.4(3) no C25 N12 C29 . . 119.4(4) no O5 C13 O6 . . 127.3(5) no O5 C13 C14 . . 114.3(4) no O6 C13 C14 . . 118.4(4) no O7 C14 C13 . . 116.5(4) no O7 C14 C15 . . 121.5(4) no C13 C14 C15 . . 122.0(4) no S3 C15 C14 . . 126.2(4) no S3 C15 C16 . . 113.8(3) no C14 C15 C16 . . 119.9(4) no C15 C16 C17 . . 98.8(4) no C16 C17 C18 . . 116.1(5) no S3 C18 C17 . . 117.0(5) no O8 C19 O9 . . 126.8(5) no O8 C19 C20 . . 115.5(4) no O9 C19 C20 . . 117.7(4) no O10 C20 C19 . . 117.3(5) no O10 C20 C21 . . 121.9(5) no C19 C20 C21 . . 120.8(5) no S4 C21 C20 . . 125.1(4) no S4 C21 C22 . . 114.2(4) no C20 C21 C22 . . 120.7(5) no C21 C22 C23 . . 103.6(6) no C22 C23 C24 . . 118.9(7) no S4 C24 C23 . . 112.9(6) no N12 C25 C26 . . 121.7(5) no C25 C26 C27 . . 118.8(5) no C26 C27 C28 . . 121.1(5) no C27 C28 C29 . . 116.5(5) no C27 C28 C30 . . 123.1(5) no C29 C28 C30 . . 120.4(5) no N12 C29 C28 . . 122.6(5) no H11 O11 H11 . 2_555 130.7 no C15 C16 H16 . . 130.8 no C17 C16 H16 . . 130.4 no C16 C17 H17 . . 122.1 no C18 C17 H17 . . 121.8 no S3 C18 H18 . . 121.5 no C17 C18 H18 . . 121.5 no C21 C22 H22 . . 127.6 no C23 C22 H22 . . 128.8 no C22 C23 H23 . . 119.7 no C24 C23 H23 . . 121.4 no S4 C24 H24 . . 125.0 no C23 C24 H24 . . 122.1 no N12 C25 H25 . . 119.2 no C26 C25 H25 . . 119.2 no C25 C26 H26 . . 120.4 no C27 C26 H26 . . 120.8 no C26 C27 H27 . . 131.5 no C28 C27 H27 . . 106.0 no N12 C29 H29 . . 118.7 no C28 C29 H29 . . 118.7 no C28 C30 H30A . . 106.8 no C28 C30 H30B . . 106.3 no C28 C30 H30C . . 120.8 no H30A C30 H30B . . 109.5 no H30A C30 H30C . . 106.6 no H30B C30 H30C . . 106.6 no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O11 H11 O6 8_454 0.960 1.979 2.859(6) 151.2 _journal_paper_doi 10.1107/S0108270198016424