#------------------------------------------------------------------------------ #$Date: 2011-01-02 20:00:31 +0000 (Sun, 02 Jan 2011) $ #$Revision: 5310 $ #$URL: svn://www.crystallography.net/cod/cif/2/2008436.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_2008436 loop_ _publ_author_name 'D. Prahadeeswaran' 'T. P. Seshadri' _publ_section_title ; 2'-O-Tosyladenosine ; _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 606 _journal_page_last 608 _journal_volume 55 _journal_year 1999 _chemical_formula_structural 'C17 H19 N5 O6 S' _chemical_formula_sum 'C17 H19 N5 O6 S' _chemical_formula_weight 421.43 _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _cell_angle_alpha 90.000(10) _cell_angle_beta 96.00(2) _cell_angle_gamma 90.000(10) _cell_formula_units_Z 2 _cell_length_a 7.359(3) _cell_length_b 7.873(3) _cell_length_c 16.098(4) _cell_measurement_temperature 293(2) _cell_volume 927.6(6) _diffrn_ambient_temperature 293(2) _exptl_crystal_density_diffrn 1.509 _refine_ls_R_factor_obs 0.0565 _refine_ls_wR_factor_obs 0.1356 _[local]_cod_cif_authors_sg_H-M 'P 21' _[local]_cod_cif_authors_sg_Hall 'P 2y1' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. '_geom_bond_publ_flag' value 'No' changed to 'no' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (32 times). Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius ; _cod_database_code 2008436 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 0.057(2) 0.0254(14) 0.0309(13) -0.0011(14) -0.0053(11) 0.0003(13) C2 0.056(2) 0.022(2) 0.034(2) 0.0006(14) -0.0057(14) -0.0005(13) N3 0.0448(15) 0.0256(14) 0.0313(14) 0.0023(11) -0.0048(11) 0.0057(11) C4 0.0325(14) 0.026(2) 0.0286(15) -0.0013(12) -0.0043(11) 0.0005(14) C5 0.0408(15) 0.023(2) 0.0267(15) -0.0012(13) -0.0019(11) 0.0015(13) C6 0.046(2) 0.026(2) 0.030(2) -0.0034(14) -0.0022(12) -0.0016(14) N6 0.083(2) 0.027(2) 0.0295(14) 0.003(2) -0.0112(13) -0.0014(13) N7 0.0475(15) 0.0254(14) 0.0311(13) 0.0017(12) -0.0041(11) 0.0034(12) C8 0.041(2) 0.0238(15) 0.0315(14) 0.0008(13) -0.0013(11) 0.0026(14) N9 0.0384(13) 0.0242(13) 0.0262(12) -0.0016(11) -0.0039(10) 0.0000(11) C1' 0.0376(15) 0.027(2) 0.0244(14) 0.0015(13) -0.0024(11) -0.0007(12) C2' 0.0341(15) 0.026(2) 0.0290(14) -0.0052(13) -0.0013(11) -0.0004(13) O2' 0.0413(12) 0.0343(13) 0.0334(11) -0.0119(11) 0.0005(9) -0.0066(11) C3' 0.0389(15) 0.028(2) 0.0274(15) 0.0004(13) -0.0063(11) 0.0005(13) O3' 0.0540(14) 0.0357(15) 0.0338(12) -0.0046(12) -0.0033(10) -0.0063(11) C4' 0.0347(14) 0.034(2) 0.0267(14) -0.0018(14) -0.0002(11) 0.0023(13) O4' 0.0343(11) 0.0430(14) 0.0307(11) -0.0010(10) -0.0016(8) 0.0099(11) C5' 0.048(2) 0.032(2) 0.039(2) -0.009(2) -0.0070(13) 0.011(2) O5' 0.062(2) 0.0322(13) 0.0373(14) 0.0070(12) -0.0091(12) 0.0056(12) S 0.0408(4) 0.0296(4) 0.0363(4) -0.0072(3) 0.0030(3) -0.0004(3) OS1 0.049(2) 0.044(2) 0.0498(14) -0.0154(13) 0.0063(11) -0.0088(14) OS2 0.0548(15) 0.041(2) 0.056(2) 0.0011(13) 0.0006(12) 0.0112(15) C10 0.037(2) 0.038(2) 0.042(2) -0.0077(14) 0.0022(13) -0.004(2) C11 0.035(2) 0.047(2) 0.043(2) -0.002(2) -0.0016(14) -0.007(2) C12 0.045(2) 0.043(3) 0.066(3) 0.003(2) 0.005(2) -0.008(2) C13 0.055(2) 0.047(2) 0.065(2) -0.011(2) 0.017(2) -0.021(2) C14 0.081(3) 0.064(3) 0.033(2) -0.019(3) 0.007(2) -0.012(2) C15 0.059(2) 0.047(2) 0.037(2) -0.011(2) -0.001(2) -0.001(2) C13' 0.109(5) 0.068(4) 0.088(4) -0.025(4) 0.039(4) -0.043(4) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_group _atom_site_type_symbol N1 0.8916(4) 0.9533(4) 0.4012(2) 0.0384(6) Uani d . 1 . N C2 0.8288(5) 0.9853(4) 0.3212(2) 0.0381(8) Uani d . 1 . C H2 0.7850(5) 1.0948(4) 0.3106(2) 0.067(16) Uiso calc R 1 . H N3 0.8203(4) 0.8837(4) 0.2557(2) 0.0345(6) Uani d . 1 . N C4 0.8790(4) 0.7256(4) 0.2775(2) 0.0295(7) Uani d . 1 . C C5 0.9463(5) 0.6744(4) 0.3569(2) 0.0304(7) Uani d . 1 . C C6 0.9539(5) 0.7952(5) 0.4211(2) 0.0344(7) Uani d . 1 . C N6 1.0182(6) 0.7632(5) 0.4997(2) 0.0475(8) Uani d . 1 . N H61 1.0197(6) 0.8422(5) 0.5367(2) 0.10(3) Uiso calc R 1 . H H62 1.0585(6) 0.6636(5) 0.5137(2) 0.052(14) Uiso calc R 1 . H N7 0.9922(4) 0.5031(4) 0.3569(2) 0.0353(6) Uani d . 1 . N C8 0.9532(4) 0.4572(5) 0.2795(2) 0.0325(7) Uani d . 1 . C H8 0.9703(4) 0.3471(5) 0.2610(2) 0.023(9) Uiso calc R 1 . H N9 0.8850(4) 0.5845(4) 0.2280(2) 0.0301(6) Uani d . 1 . N C1' 0.8297(4) 0.5698(5) 0.1391(2) 0.0299(7) Uani d . 1 . C H1' 0.8449(4) 0.4523(5) 0.1210(2) 0.052(13) Uiso calc R 1 . H C2' 0.6348(4) 0.6307(4) 0.1109(2) 0.0300(7) Uani d . 1 . C H2' 0.6067(4) 0.7306(4) 0.1436(2) 0.028(9) Uiso calc R 1 . H O2' 0.4923(3) 0.5061(3) 0.11357(14) 0.0365(6) Uani d . 1 . O C3' 0.6480(4) 0.6828(5) 0.0204(2) 0.0321(7) Uani d . 1 . C H3' 0.5523(4) 0.7644(5) 0.0009(2) 0.031(10) Uiso calc R 1 . H O3' 0.6449(4) 0.5394(4) -0.0323(2) 0.0417(6) Uani d . 1 . O HO3' 0.528(7) 0.520(4) -0.056(3) 0.062(15) Uiso calc R 1 . H C4' 0.8357(4) 0.7641(5) 0.0275(2) 0.0321(7) Uani d . 1 . C H4' 0.8922(4) 0.7399(5) -0.0237(2) 0.033(10) Uiso calc R 1 . H O4' 0.9415(3) 0.6777(4) 0.09741(14) 0.0363(6) Uani d . 1 . O C5' 0.8423(5) 0.9544(5) 0.0426(2) 0.0407(8) Uani d . 1 . C H5'1 0.9652(5) 0.9850(5) 0.0653(2) 0.052(13) Uiso calc R 1 . H H5'2 0.8170(5) 1.0118(5) -0.0107(2) 0.056(14) Uiso calc R 1 . H O5' 0.7191(4) 1.0140(4) 0.0971(2) 0.0448(7) Uani d . 1 . O HO5' 0.740(6) 0.979(8) 0.136(4) 0.07(2) Uiso calc R 1 . H S 0.42556(10) 0.44258(11) 0.19784(5) 0.0357(3) Uani d . 1 . S OS1 0.2545(4) 0.3663(4) 0.1713(2) 0.0474(7) Uani d . 1 . O OS2 0.5634(4) 0.3433(4) 0.2426(2) 0.0508(7) Uani d . 1 . O C10 0.3988(5) 0.6301(5) 0.2539(2) 0.0388(8) Uani d . 1 . C C11 0.3128(5) 0.7698(6) 0.2153(2) 0.0420(8) Uani d . 1 . C H11 0.2637(5) 0.7637(6) 0.1597(2) 0.061(15) Uiso calc R 1 . H C12 0.3004(5) 0.9186(6) 0.2600(3) 0.0515(10) Uani d . 1 . C H12 0.2452(5) 1.0134(6) 0.2338(3) 0.061(15) Uiso calc R 1 . H C13 0.3701(6) 0.9283(7) 0.3443(3) 0.0547(11) Uani d . 1 . C C14 0.4492(7) 0.7858(8) 0.3813(3) 0.0591(13) Uani d . 1 . C H14 0.4922(7) 0.7902(8) 0.4376(3) 0.073(17) Uiso calc R 1 . H C15 0.4678(6) 0.6350(6) 0.3379(2) 0.0481(9) Uani d . 1 . C H15 0.5244(6) 0.5407(6) 0.3640(2) 0.09(2) Uiso calc R 1 . H C13' 0.3580(10) 1.0924(10) 0.3910(5) 0.086(2) Uani d . 1 . C H1M 0.2981(10) 1.1763(10) 0.3545(5) 0.104 Uiso calc R 1 . H H2M 0.4787(10) 1.1308(10) 0.4105(5) 0.104 Uiso calc R 1 . H H3M 0.2893(10) 1.0749(10) 0.4378(5) 0.104 Uiso calc R 1 . H loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag N1 C2 . 1.345(5) no N1 C6 . 1.354(5) no C2 N3 . 1.320(5) no N3 C4 . 1.351(5) no C4 N9 . 1.370(4) no C4 C5 . 1.383(4) no C5 N7 . 1.390(5) no C5 C6 . 1.402(5) no C6 N6 . 1.328(5) no N7 C8 . 1.299(4) no C8 N9 . 1.363(4) no N9 C1' . 1.451(4) no C1' O4' . 1.402(4) no C1' C2' . 1.535(4) no C2' O2' . 1.440(4) no C2' C3' . 1.527(4) no O2' S . 1.572(2) no C3' O3' . 1.411(4) no C3' C4' . 1.516(4) no C4' O4' . 1.466(4) no C4' C5' . 1.517(6) no C5' O5' . 1.406(5) no S OS2 . 1.417(3) no S OS1 . 1.420(3) no S C10 . 1.752(4) no C10 C11 . 1.384(6) no C10 C15 . 1.394(5) no C11 C12 . 1.382(6) no C12 C13 . 1.402(7) no C13 C14 . 1.371(8) no C13 C13' . 1.502(7) no C14 C15 . 1.391(7) no