#------------------------------------------------------------------------------ #$Date: 2011-09-10 04:16:28 +0100 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2008489.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2008489 loop_ _publ_author_name 'Tamura, M.' 'Kajikawa, Y.' 'Azuma, N.' 'Tani, H.' 'Tajima, K.' 'Kanaori, K.' 'Makino, K.' 'Takayama, T.' _publ_section_title ; [1,3-Bis(pyridine-2-carboxamido)propane]palladium(II) monohydrate and its nickel(II) analogue ; _journal_issue 5 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 719 _journal_page_last 722 _journal_volume 55 _journal_year 1999 _chemical_formula_analytical 'C15 H16 N4 Ni1 O3 ' _chemical_formula_iupac '[Ni (C15 H14 N4 O2)], H2 O' _chemical_formula_moiety 'C15 H16 N4 Ni1 O3 ' _chemical_formula_structural 'C15 H16 N4 Ni1 O3 ' _chemical_formula_sum 'C15 H16 N4 Ni O3' _chemical_formula_weight 359.02 _space_group_IT_number 13 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yac' _symmetry_space_group_name_H-M 'P 1 2/n 1' _audit_creation_method 'from TEXRAY.INF file' _cell_angle_alpha 90 _cell_angle_beta 105.73(2) _cell_angle_gamma 90 _cell_formula_units_Z 2 _cell_length_a 7.183(2) _cell_length_b 9.307(3) _cell_length_c 11.326(3) _cell_measurement_reflns_used 25 _cell_measurement_temperature 298.2 _cell_measurement_theta_max 12.8 _cell_measurement_theta_min 12.0 _cell_volume 728.8(4) _computing_cell_refinement 'MSC/AFC Diffractometer Control Software' _computing_data_collection ; MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1993) ; _computing_data_reduction 'TEXSAN (Molecular Structure Corporation, 1995)' _computing_molecular_graphics TEXSAN _computing_publication_material TEXSAN _computing_structure_refinement TEXSAN _computing_structure_solution TEXSAN _diffrn_ambient_temperature 298.2 _diffrn_measurement_device_type 'Rigaku AFC-5R' _diffrn_measurement_method \w-2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'Rigaku rotating anode' _diffrn_radiation_type 'Mo K\a' _diffrn_radiation_wavelength 0.7107 _diffrn_reflns_av_R_equivalents 0.023 _diffrn_reflns_av_sigmaI/netI 0.000 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 14 _diffrn_reflns_limit_l_min -14 _diffrn_reflns_number 1919 _diffrn_reflns_reduction_process 'Lp corrections applied' _diffrn_reflns_theta_max 27.5 _diffrn_reflns_theta_min 2.35 _diffrn_standards_decay_% 0.85 _diffrn_standards_interval_count 150 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 1.355 _exptl_absorpt_correction_T_max 0.897 _exptl_absorpt_correction_T_min 0.723 _exptl_absorpt_correction_type '\y scan' _exptl_absorpt_process_details '(North et al., 1968)' _exptl_crystal_colour red _exptl_crystal_density_diffrn 1.636 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prismatic _exptl_crystal_F_000 372 _exptl_crystal_size_max 0.50 _exptl_crystal_size_mid 0.25 _exptl_crystal_size_min 0.08 _refine_diff_density_max 0.42 _refine_diff_density_min -0.62 _refine_ls_extinction_coef 0.03346 _refine_ls_extinction_method 'Zachariasen (1967) type 2, Gaussian isotropic' _refine_ls_goodness_of_fit_ref 1.674 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 111 _refine_ls_number_reflns 1231 _refine_ls_number_restraints 0 _refine_ls_R_factor_gt 0.043 _refine_ls_shift/esd_max 0.0022 _refine_ls_structure_factor_coef F _refine_ls_weighting_details 'w = 1/\s^2^(Fo)' _refine_ls_weighting_scheme sigma _refine_ls_wR_factor_ref 0.045 _reflns_number_gt 1231 _reflns_number_total 1786 _reflns_threshold_expression I>3\s(I) _[local]_cod_data_source_file oa1076.cif _[local]_cod_data_source_block II _[local]_cod_cif_authors_sg_H-M 'P 2/n' _[local]_cod_chemical_formula_sum_orig 'C15 H16 N4 Ni1 O3 ' _cod_original_cell_volume 728.8(3) _cod_database_code 2008489 loop_ _symmetry_equiv_pos_as_xyz ' +x, +y, +z' '1/2+x, -y, 1/2+z' ' -x, -y, -z' ' 1/2-x, +y, 1/2-z' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Ni 0.0577(4) 0.0315(3) 0.0300(3) 0.00000 0.0014(3) 0.00000 O1 0.100(2) 0.080(2) 0.0490(10) 0.0260(10) -0.0120(10) -0.0330(10) O2 0.113(4) 0.050(2) 0.085(3) 0.00000 0.045(3) 0.00000 N1 0.0530(10) 0.0410(10) 0.0270(10) 0.0120(10) 0.0090(10) -0.0010(10) N2 0.076(2) 0.0360(10) 0.0470(10) 0.0090(10) -0.0040(10) -0.0090(10) C1 0.045(2) 0.060(2) 0.0300(10) 0.0150(10) 0.0070(10) -0.0030(10) C2 0.058(2) 0.043(2) 0.0320(10) 0.0080(10) 0.0150(10) 0.0030(10) C3 0.060(2) 0.054(2) 0.048(2) 0.0110(10) 0.0240(10) 0.0110(10) C4 0.062(2) 0.090(3) 0.040(2) 0.018(2) 0.0210(10) 0.019(2) C5 0.054(2) 0.089(3) 0.0280(10) 0.017(2) 0.0090(10) -0.0030(10) C6 0.060(2) 0.056(2) 0.046(2) 0.018(2) -0.0030(10) -0.0170(10) C7 0.123(4) 0.034(2) 0.101(3) 0.005(2) -0.033(3) -0.014(2) C8 0.390(10) 0.030(3) 0.124(7) 0.00000 0.160(10) 0.00000 loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_occupancy Ni 0.25 0.10000(10) 0.25 0.0418(3) Uani 0.500 O1 0.3594(5) 0.2465(3) 0.5881(2) 0.0830(10) Uani 1.000 O2 0.25000 0.4494(5) -0.25000 0.079(3) Uani 0.500 N1 0.2193(4) -0.0337(3) 0.3714(2) 0.0410(10) Uani 1.000 N2 0.2759(5) 0.2339(3) 0.3755(3) 0.0570(10) Uani 1.000 C1 0.2685(5) 0.0236(4) 0.4857(3) 0.0460(10) Uani 1.000 C2 0.1485(5) -0.1678(4) 0.3570(3) 0.0440(10) Uani 1.000 C3 0.1339(6) -0.2508(4) 0.4551(3) 0.052(2) Uani 1.000 C4 0.1966(6) -0.1956(5) 0.5719(3) 0.062(2) Uani 1.000 C5 0.2625(6) -0.0549(5) 0.5864(3) 0.057(2) Uani 1.000 C6 0.3093(6) 0.1813(4) 0.4881(3) 0.057(2) Uani 1.000 C7 0.2920(8) 0.3903(5) 0.3642(5) 0.099(3) Uani 1.000 C8 0.25000 0.4422(7) 0.25000 0.163(8) Uani 0.500 H1 0.10708 -0.20696 0.27667 0.05266 Uiso 1.000 H2 0.08110 -0.34489 0.44212 0.06212 Uiso 1.000 H3 0.19485 -0.25270 0.64112 0.07474 Uiso 1.000 H4 0.30306 -0.01342 0.66595 0.06881 Uiso 1.000 H5 0.20663 0.43393 0.40457 0.11850 Uiso 1.000 H6 0.42137 0.41675 0.40443 0.11850 Uiso 1.000 H7 0.13965 0.49993 0.24678 0.19555 Uiso 1.000 H8 0.283(7) 0.390(4) -0.301(3) 0.090(10) Uiso 1.000 loop_ _atom_type_symbol _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C 0.002 0.002 'International Tables Vol IV Table 2.2A' H 0.000 0.000 'International Tables Vol IV Table 2.2A' N 0.004 0.003 'International Tables Vol IV Table 2.2A' O 0.008 0.006 'International Tables Vol IV Table 2.2A' Ni 0.285 1.113 'International Tables Vol IV Table 2.2A' loop_ _diffrn_standard_refln_index_h _diffrn_standard_refln_index_k _diffrn_standard_refln_index_l 1 -2 -1 0 -2 1 -1 1 3 loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag N1 Ni N1 4_555 98.7(2) yes N1 Ni N2 . 83.90(10) yes N1 Ni N2 4_555 168.00(10) yes N1 Ni N2 4_555 168.00(10) yes N1 Ni N2 . 83.90(10) no N2 Ni N2 . 96.0(2) no Ni N1 C1 . 112.3(2) no Ni N1 C2 . 129.2(2) no C1 N1 C2 . 118.3(3) no Ni N2 C6 . 116.2(3) no Ni N2 C7 . 126.2(3) no C6 N2 C7 . 116.9(3) no N1 C1 C5 . 121.9(4) no N1 C1 C6 . 113.8(3) no C5 C1 C6 . 124.0(3) no N1 C2 C3 . 122.1(3) no C2 C3 C4 . 119.3(4) no C3 C4 C5 . 118.6(3) no C1 C5 C4 . 119.5(3) no O1 C6 N2 . 128.7(4) no O1 C6 C1 . 120.1(4) no N2 C6 C1 . 111.2(3) no N2 C7 C8 . 116.2(5) no C7 C8 C7 . 137.6(7) no H8 O2 H8 . 102(6) no N1 C2 H1 . 118.92 no C3 C2 H1 . 118.93 no C2 C3 H2 . 120.35 no C3 C4 H3 . 120.67 no C5 C4 H3 . 120.73 no C1 C5 H4 . 120.23 no C4 C5 H4 . 120.24 no N2 C7 H5 . 107.75 no N2 C7 H6 . 107.89 no C8 C7 H5 . 107.56 no C8 C7 H6 . 107.86 no H5 C7 H6 . 109.52 no C7 C8 H7 . 101.99 no C7 C8 H7 . 101.83 no C7 C8 H7 . 101.83 no C7 C8 H7 . 101.99 no H7 C8 H7 . 110.44 no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Ni N1 . 1.911(3) yes Ni N1 4_555 1.911(3) no Ni N2 . 1.862(3) yes Ni N2 . 1.862(3) no O1 C6 . 1.248(4) no N1 C1 . 1.355(4) no N1 C2 . 1.341(4) no N2 C6 . 1.326(5) yes N2 C7 . 1.468(5) yes C1 C5 . 1.366(5) no C1 C6 . 1.495(5) no C2 C3 . 1.380(5) no C3 C4 . 1.376(5) no C4 C5 . 1.387(6) no C7 C8 . 1.336(6) no O2 H8 . 0.87(4) no O2 H8 4_554 0.87(4) no C2 H1 . 0.950 no C3 H2 . 0.950 no C4 H3 . 0.950 no C5 H4 . 0.951 no C7 H5 . 0.951 no C7 H6 . 0.948 no C8 H7 . 0.944 no C8 H7 . 0.944 no loop_ _geom_contact_atom_site_label_1 _geom_contact_atom_site_label_2 _geom_contact_distance _geom_contact_site_symmetry_2 _geom_contact_publ_flag Ni C5 3.515(4) 2_454 no Ni C5 3.515(4) 3_656 no O1 O2 2.886(4) 1_556 no O1 C2 3.271(4) 2_555 no O1 C3 3.444(5) 3_556 no O1 C2 3.496(5) 3_656 no O1 N1 3.541(4) 3_656 no O2 C3 3.598(5) 2_554 no O2 C3 3.598(5) 3_555 no N1 C1 3.597(5) 3_656 no C1 C1 3.282(7) 3_656 no C1 C6 3.526(5) 3_656 no C3 C6 3.475(6) 3_556 no C4 C6 3.514(6) 3_556 no Ni H4 3.197 2_454 no Ni H4 3.197 3_656 no O1 H8 2.01(4) 1_556 no O1 H1 2.409 2_555 no O1 H8 3.16(4) 4_555 no O1 H2 3.223 3_555 no O1 H2 3.223 3_556 no O1 H7 3.305 2_565 no O1 H6 3.498 3_666 no O2 H7 2.856 2_564 no O2 H7 2.856 3_565 no O2 H2 2.921 2_554 no O2 H2 2.921 3_555 no O2 H3 3.016 1_564 no O2 H3 3.016 4_565 no O2 H1 3.368 2_554 no O2 H1 3.368 3_555 no O2 H5 3.444 2_564 no O2 H5 3.444 3_565 no O2 H6 3.528 2_464 no O2 H6 3.528 3_665 no N1 H4 3.284 2_454 no N1 H4 3.598 3_656 no N2 H3 3.342 3_556 no C2 H4 3.283 2_454 no C2 H7 3.327 1_545 no C2 H8 3.44(5) 2_455 no H2 H8 2.703 3_555 no H2 H7 2.767 1_545 no H2 H8 3.023 2_455 no H2 H5 3.149 3_556 no H2 H6 3.408 1_545 no H2 H2 3.499 3_546 no H2 H6 3.590 3_656 no H3 H3 2.377 4_556 no H3 H4 3.118 4_556 no H3 H5 3.256 3_556 no H3 H6 3.314 3_656 no H3 H8 3.413 1_546 no H4 H4 2.232 4_556 no H5 H8 3.262 1_556 no H5 H6 3.264 3_666 no H6 H6 2.651 3_666 no H6 H8 3.240 3_665 no H7 H8 2.683 2_465 no H7 H8 3.417 3_565 no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_D _geom_hbond_site_symmetry_H _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag O2 H8 O1 1_556 1_556 0.87(4) 2.01(4) 2.886(4) 177(4) no loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion Ni N1 C1 C5 -178.1(3) Ni N1 C1 C6 7.7(4) Ni N1 C2 C3 -179.3(3) Ni N1 C1 C5 -178.1(3) Ni N1 C1 C6 7.7(4) Ni N1 C2 C3 -179.3(3) Ni N2 C6 O1 168.6(4) Ni N2 C6 C1 -14.7(5) Ni N2 C7 C8 12.6(7) Ni N2 C6 O1 168.6(4) Ni N2 C6 C1 -14.7(5) Ni N2 C7 C8 12.6(7) O1 C6 N2 C7 -2.5(7) O1 C6 C1 N1 -178.8(4) O1 C6 C1 C5 7.2(6) N1 Ni N1 C1 155.9(3) N1 Ni N1 C2 -28.0(3) N1 Ni N2 C6 15.5(3) N1 Ni N2 C7 -174.3(4) N1 Ni N2 C6 -87.9(7) N1 Ni N2 C7 82.2(7) N1 C1 C5 C4 -2.7(6) N1 C1 C6 N2 4.1(5) N1 C2 C3 C4 -1.1(6) N2 Ni N1 C1 -12.3(2) N2 Ni N1 C2 163.8(3) N2 Ni N1 C1 -102.2(7) N2 Ni N1 C2 73.9(7) N2 Ni N2 C6 -176.5(4) N2 Ni N2 C7 -6.4(3) N2 C6 C1 C5 -169.9(4) N2 C7 C8 C7 -6.3(4) C1 N1 C2 C3 -3.4(5) C1 C5 C4 C3 -1.8(6) C1 C6 N2 C7 174.3(4) C2 N1 C1 C5 5.3(5) C2 N1 C1 C6 -168.9(3) C2 C3 C4 C5 3.6(6) C4 C5 C1 C6 170.8(4) C6 N2 C7 C8 -177.3(4)