#------------------------------------------------------------------------------ #$Date: 2013-12-28 13:58:47 +0000 (Sat, 28 Dec 2013) $ #$Revision: 91933 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/85/2008554.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2008554 loop_ _publ_author_name 'Nakagawa, Hiroo' 'Kani, Yoshiyuki' 'Tsuchimoto, Masanobu' 'Ohba, Shigeru' 'Hideaki, Matsushima' 'Tokii, Tadashi' _publ_section_title ; A monomeric and a dimeric copper(II) trigonelline adduct with chloride, and a dimeric copper(II) 1-methyl-2-pyrrolecarboxylate adduct with 3-methylpyridine ; _journal_issue 6 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 882 _journal_page_last 886 _journal_volume 55 _journal_year 1999 _chemical_formula_iupac '[Cu2 Cl2 (C7 H7 N O2)4] Cl2, 8H2 O' _chemical_formula_moiety 'C28 H28 Cl2 Cu2 N4 O8 2+, 2Cl 1-, 8H2 O' _chemical_formula_structural ; (Cu2 (C7 H7 N O2)4 Cl2) 2Cl 8(H2 O) ; _chemical_formula_sum 'C28 H44 Cl4 Cu2 N4 O16' _chemical_formula_weight 961.58 _chemical_name_systematic ; Tetrakis(\m-trigonelline-O,O')-dichlorocopper(II) dichloride octahydrate ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_type_scat_source IntTabIV _cell_angle_alpha 99.400(10) _cell_angle_beta 109.290(10) _cell_angle_gamma 75.570(10) _cell_formula_units_Z 1 _cell_length_a 10.156(2) _cell_length_b 13.883(2) _cell_length_c 7.7930(10) _cell_measurement_reflns_used 25 _cell_measurement_temperature 299 _cell_measurement_theta_max 15 _cell_measurement_theta_min 10 _cell_volume 1000.4(3) _computing_cell_refinement 'AFC/MSC Diffractometer Control System' _computing_data_collection 'AFC/MSC Diffractometer Control System (Rigaku Corporation, 1993)' _computing_data_reduction 'local programs' _computing_molecular_graphics CRYSTAN-GM _computing_publication_material CRYSTAN-GM _computing_structure_refinement CRYSTAN-GM _computing_structure_solution 'CRYSTAN-GM (Edwards et al., 1996)' _diffrn_measurement_device_type 'Rigaku AFC-5' _diffrn_measurement_method \q-2\q _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.021 _diffrn_reflns_limit_h_max 13 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 18 _diffrn_reflns_limit_k_min -18 _diffrn_reflns_limit_l_max 10 _diffrn_reflns_limit_l_min -10 _diffrn_reflns_number 4848 _diffrn_reflns_theta_max 27.5 _diffrn_standards_decay_% 22.6 _diffrn_standards_interval_count 100 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 1.401 _exptl_absorpt_correction_T_max 0.872 _exptl_absorpt_correction_T_min 0.705 _exptl_absorpt_correction_type integration _exptl_absorpt_process_details '(Coppens et al., 1965)' _exptl_crystal_colour blue _exptl_crystal_density_diffrn 1.596 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate-like _exptl_crystal_F_000 494 _exptl_crystal_size_max 0.50 _exptl_crystal_size_mid 0.25 _exptl_crystal_size_min 0.10 _refine_diff_density_max 0.64 _refine_diff_density_min -0.99 _refine_ls_extinction_method None _refine_ls_goodness_of_fit_obs 1.48 _refine_ls_hydrogen_treatment constr _refine_ls_number_parameters 244 _refine_ls_number_reflns 3714 _refine_ls_R_factor_obs .043 _refine_ls_shift/esd_max 0.02 _refine_ls_shift/esd_mean 0.0074 _refine_ls_structure_factor_coef F _refine_ls_weighting_details 'w = 1/[\s^2^(F) + 0.000225F^2^]' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_obs .043 _reflns_number_observed 3714 _reflns_number_total 4586 _reflns_threshold_expression |F~o~|>3\s(|F~o~|) _[local]_cod_data_source_file da1057.cif _[local]_cod_data_source_block II _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_atom_site_thermal_displace_type' tag value 'Uij' was replaced with 'Uani' value 27 times. Automatic conversion script Id: cif_fix_values 1646 2011-03-28 12:23:43Z adriana ; _cod_original_cell_volume 1000.5(2) _cod_database_code 2008554 loop_ _symmetry_equiv_pos_as_xyz +x,+y,+z -x,-y,-z loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Cu1 .01740(10) .03050(10) .01720(10) -.00660(10) .00320(10) .00220(10) Cl2 .0303(3) .0502(4) .0370(3) -.0077(3) .0190(3) -.0015(3) Cl3 .1410(10) .0700(10) .0850(10) -.0120(10) .0240(10) .0200(10) O4 .0347(9) .0372(9) .0329(8) -.0047(7) .0105(7) .0110(7) O5 .0302(8) .0351(9) .0325(8) -.0034(7) .0078(7) .0117(7) O6 .0273(8) .0460(10) .0203(7) -.0148(7) .0045(6) -.0030(7) O7 .0223(8) .0442(10) .0245(7) -.0112(7) .0028(6) -.0039(7) O8 .112(2) .107(2) .148(3) -.031(2) .050(2) .006(2) O9 .175(3) .107(3) .126(3) .019(2) .077(3) .042(2) O10 .113(2) .077(2) .101(2) -.021(2) -.004(2) -.012(2) O11 .097(2) .202(4) .126(3) -.004(2) .009(2) -.009(3) N12 .0530(10) .0380(10) .0360(10) -.0110(10) .0110(10) .0090(10) N13 .0280(10) .0350(10) .0180(10) -.0130(10) .0020(10) .0020(10) C14 .0280(10) .0310(10) .0220(10) -.0130(10) -.0010(10) .0020(10) C15 .0320(10) .0310(10) .0290(10) -.0110(10) .0040(10) .0060(10) C16 .056(2) .042(2) .0390(10) -.0060(10) .0190(10) .0060(10) C17 .080(2) .039(2) .055(2) .002(2) .028(2) .0080(10) C18 .071(2) .034(2) .051(2) -.0050(10) .0140(10) .0140(10) C19 .088(2) .068(2) .043(2) -.010(2) .030(2) .0170(10) C20 .0350(10) .0330(10) .0350(10) -.0080(10) .0040(10) .0080(10) C21 .0240(10) .0290(10) .0210(10) -.0100(10) .0020(10) .0050(10) C22 .0220(10) .0270(10) .0220(10) -.0070(10) .0020(10) .0030(10) C23 .0270(10) .0390(10) .0250(10) -.0110(10) .0060(10) .0040(10) C24 .0240(10) .0440(10) .0320(10) -.0150(10) .0070(10) .0010(10) C25 .0250(10) .0380(10) .0280(10) -.0130(10) .0010(10) .0010(10) C26 .050(2) .074(2) .0180(10) -.0260(10) .0100(10) -.0010(10) C27 .0230(10) .0330(10) .0240(10) -.0090(10) .0030(10) .0050(10) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_occupancy Cu1 1.09933(3) .46524(2) .90592(3) .02200(10) Uani 1.000 Cl2 1.27978(6) .40018(5) .75449(8) .0404(2) Uani 1.000 Cl3 .78790(10) .12628(8) .33740(10) .1024(6) Uani 1.000 O4 .8605(2) .65110(10) .9511(2) .0344(6) Uani 1.000 O5 1.0214(2) .59580(10) .7995(2) .0320(6) Uani 1.000 O6 .7801(2) .46950(10) .8719(2) .0323(6) Uani 1.000 O7 .9402(2) .41480(10) .7180(2) .0323(6) Uani 1.000 O8 .5049(3) .0994(2) .0386(5) .125(2) Uani 1.000 O9 .7385(4) .1766(2) .7204(4) .138(2) Uani 1.000 O10 .4719(3) .1786(2) .7306(4) .1090(10) Uani 1.000 O11 .9183(3) .0924(3) 1.0188(5) .158(2) Uani 1.000 N12 .8496(2) .8383(2) .4948(3) .0421(9) Uani 1.000 N13 .6196(2) .36000(10) .2518(2) .0272(7) Uani 1.000 C14 .9207(2) .6587(2) .8383(3) .0276(8) Uani 1.000 C15 .8630(2) .7510(2) .7386(3) .0304(8) Uani 1.000 C16 .7727(3) .8324(2) .7959(3) .0470(10) Uani 1.000 C17 .7245(3) .9177(2) .7038(4) .0610(10) Uani 1.000 C18 .7657(3) .9190(2) .5534(4) .0530(10) Uani 1.000 C19 .8867(4) .8394(2) .3265(4) .0650(10) Uani 1.000 C20 .8990(3) .7550(2) .5837(3) .0351(9) Uani 1.000 C21 .8176(2) .4296(2) .7345(3) .0246(8) Uani 1.000 C22 .7031(2) .3982(2) .5714(3) .0244(7) Uani 1.000 C23 .5759(2) .3851(2) .5850(3) .0301(8) Uani 1.000 C24 .4737(2) .3575(2) .4299(3) .0338(9) Uani 1.000 C25 .4966(2) .3457(2) .2638(3) .0313(8) Uani 1.000 C26 .6459(3) .3454(2) .0733(3) .0470(10) Uani 1.000 C27 .7223(2) .3848(2) .4014(3) .0267(8) Uani 1.000 H8A .58643 .10617 .14130 .20 Uiso 1.000 H8B .50243 .12747 -.06680 .20 Uiso .500 H8C .52943 .02787 .03500 .20 Uiso .500 H9A .74201 .14891 .60085 .20 Uiso 1.000 H9B .64971 .16001 .71485 .20 Uiso 1.000 H10A .41679 .24549 .71053 .20 Uiso 1.000 H10B .39909 .14719 .64283 .20 Uiso 1.000 H11A .87520 .13704 .92397 .20 Uiso 1.000 H11B .88140 .07664 1.10717 .20 Uiso .500 H11C 1.00170 .03984 1.02867 .20 Uiso .500 H16 .74389 .82952 .90019 .10 Uiso 1.000 H17 .66317 .97499 .74428 .10 Uiso 1.000 H18 .73426 .97812 .48929 .10 Uiso 1.000 H19A .94657 .78156 .28497 .10 Uiso 1.000 H19B .93327 .89416 .34577 .10 Uiso 1.000 H19C .79847 .85206 .22957 .10 Uiso 1.000 H20 .95916 .69819 .53997 .10 Uiso 1.000 H23 .55971 .39479 .70181 .10 Uiso 1.000 H24 .38625 .34691 .43854 .10 Uiso 1.000 H25 .42543 .32702 .15547 .10 Uiso 1.000 H26A .73362 .35579 .06535 .10 Uiso 1.000 H26B .56982 .38989 -.00455 .10 Uiso 1.000 H26C .64012 .27779 .02575 .10 Uiso 1.000 H27 .80979 .39339 .38980 .10 Uiso 1.000 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_1 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Cu1 Cu1 . 2_767 2.7700(10) yes Cu1 Cl2 . . 2.4130(10) yes Cu1 O4 . 2_767 1.994(2) yes Cu1 O5 . . 1.985(2) yes Cu1 O6 . 2_767 1.989(2) yes Cu1 O7 . . 1.978(2) yes O4 C14 . . 1.255(3) yes O5 C14 . . 1.255(3) yes O6 C21 . . 1.253(3) yes O7 C21 . . 1.256(3) yes N12 C18 . . 1.343(4) no N12 C19 . . 1.483(4) no N12 C20 . . 1.347(4) no N13 C25 . . 1.347(3) no N13 C26 . . 1.475(3) no N13 C27 . . 1.345(3) no C14 C15 . . 1.497(3) no C15 C16 . . 1.381(4) no C15 C20 . . 1.384(3) no C16 C17 . . 1.383(4) no C17 C18 . . 1.372(4) no C21 C22 . . 1.501(3) no C22 C23 . . 1.388(3) no C22 C27 . . 1.378(3) no C23 C24 . . 1.380(4) no C24 C25 . . 1.367(3) no O8 H8A . . .955 no O8 H8B . . .956 no O8 H8C . . .959 no O9 H9A . . .957 no O9 H9B . . .971 no O10 H10A . . .965 no O10 H10B . . .966 no O11 H11A . . .960 no O11 H11B . . .961 no O11 H11C . . .961 no C16 H16 . . .960 no C17 H17 . . .960 no C18 H18 . . .961 no C19 H19A . . .959 no C19 H19B . . .959 no C19 H19C . . .960 no C20 H20 . . .960 no C23 H23 . . .960 no C24 H24 . . .960 no C25 H25 . . .960 no C26 H26A . . .960 no C26 H26B . . .960 no C26 H26C . . .960 no C27 H27 . . .960 no loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag Cl2 Cu1 O4 . 2_767 97.20(10) yes Cl2 Cu1 O5 . . 98.20(10) yes Cl2 Cu1 O6 . 2_767 97.40(10) yes Cl2 Cu1 O7 . . 97.90(10) yes O4 Cu1 O5 2_767 . 164.60(10) yes O4 Cu1 O6 2_767 2_767 87.50(10) yes O4 Cu1 O7 2_767 . 90.70(10) yes O5 Cu1 O6 . 2_767 89.90(10) yes O5 Cu1 O7 . . 87.90(10) yes O6 Cu1 O7 2_767 . 164.70(10) yes Cu1 O4 C14 2_767 . 126.7(2) yes Cu1 O5 C14 . . 122.4(2) yes Cu1 O6 C21 2_767 . 125.3(2) yes Cu1 O7 C21 . . 122.8(2) yes C18 N12 C19 . . 119.8(3) no C18 N12 C20 . . 121.4(3) no C19 N12 C20 . . 118.8(3) no C25 N13 C26 . . 120.1(2) no C25 N13 C27 . . 121.2(2) no C26 N13 C27 . . 118.6(2) no O4 C14 O5 . . 126.2(2) yes O4 C14 C15 . . 116.1(2) no O5 C14 C15 . . 117.7(2) no C14 C15 C16 . . 121.5(2) no C14 C15 C20 . . 119.6(2) no C16 C15 C20 . . 118.8(3) no C15 C16 C17 . . 120.1(3) no C16 C17 C18 . . 118.9(3) no N12 C18 C17 . . 120.6(3) no N12 C20 C15 . . 120.1(3) no O6 C21 O7 . . 126.8(2) yes O6 C21 C22 . . 116.4(2) no O7 C21 C22 . . 116.7(2) no C21 C22 C23 . . 122.1(2) no C21 C22 C27 . . 119.3(2) no C23 C22 C27 . . 118.6(2) no C22 C23 C24 . . 119.6(2) no C23 C24 C25 . . 119.9(2) no N13 C25 C24 . . 120.0(2) no N13 C27 C22 . . 120.7(2) no H8A O8 H8B . . 113.8 no H8A O8 H8C . . 92.3 no H8B O8 H8C . . 116.2 no H9A O9 H9B . . 98.2 no H10A O10 H10B . . 94.1 no H11A O11 H11B . . 130.8 no H11A O11 H11C . . 126.4 no H11B O11 H11C . . 101.3 no C15 C16 H16 . . 119.6 no C17 C16 H16 . . 120.3 no C16 C17 H17 . . 120.6 no C18 C17 H17 . . 120.5 no N12 C18 H18 . . 119.6 no C17 C18 H18 . . 119.8 no N12 C19 H19A . . 119.5 no N12 C19 H19B . . 106.9 no N12 C19 H19C . . 106.9 no H19A C19 H19B . . 107.1 no H19A C19 H19C . . 107.0 no H19B C19 H19C . . 109.0 no N12 C20 H20 . . 120.2 no C15 C20 H20 . . 119.8 no C22 C23 H23 . . 120.1 no C24 C23 H23 . . 120.4 no C23 C24 H24 . . 120.1 no C25 C24 H24 . . 120.0 no N13 C25 H25 . . 119.8 no C24 C25 H25 . . 120.2 no N13 C26 H26A . . 119.8 no N13 C26 H26B . . 106.9 no N13 C26 H26C . . 106.9 no H26A C26 H26B . . 107.0 no H26A C26 H26C . . 107.0 no H26B C26 H26C . . 109.0 no N13 C27 H27 . . 119.7 no C22 C27 H27 . . 119.6 no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O8 H8A Cl3 . 0.955 2.163 3.107(4) 169 O8 H8B O10 1_554 0.956 1.739 2.689(5) 172 O8 H8C O8 2_655 0.959 1.848 2.746(5) 155 O9 H9A Cl3 . 0.957 2.209 3.128(4) 161 O9 H9B O10 . 0.971 1.802 2.728(5) 158 O10 H10A Cl2 1_455 0.965 2.291 3.220(3) 161 O10 H10B N12 2_666 0.966 2.366 3.203(4) 145 O11 H11A O9 . 0.960 1.787 2.669(5) 151 O11 H11B Cl3 1_556 0.961 2.234 3.102(4) 150 O11 H11C O11 2_757 0.961 1.844 2.716(6) 150 _journal_paper_doi 10.1107/S0108270199001985