#------------------------------------------------------------------------------ #$Date: 2015-04-02 12:22:18 +0100 (Thu, 02 Apr 2015) $ #$Revision: 134621 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/88/2008804.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2008804 loop_ _publ_author_name 'Rybarczyk, Agnieszka J.' 'Olszak, Tomasz A.' 'Ma\/lecka, Magdalena' 'Nawrot-Modranka, Jolanta' _publ_section_title ; X-ray investigations of benzopyran derivatives substituted at position 3 ; _journal_issue 8 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1313 _journal_page_last 1315 _journal_paper_doi 10.1107/S0108270199004734 _journal_volume 55 _journal_year 1999 _chemical_formula_analytical 'C13 H15 N2 O5 P S' _chemical_formula_moiety 'C13 H15 N2 O5 P S' _chemical_formula_sum 'C13 H15 N2 O5 P S' _chemical_formula_weight 342.30 _chemical_name_systematic ; 3-{[2-(dimethoxythiophosphoryl)- 2-methylhydrazino]carbonyl}-3,4-dihydro-2H-1-benzopyran-2,4-dione ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _audit_creation_method SHELXL97 _cell_angle_alpha 101.53(2) _cell_angle_beta 115.50(3) _cell_angle_gamma 91.91(3) _cell_formula_units_Z 2 _cell_length_a 7.666(3) _cell_length_b 15.521(2) _cell_length_c 7.470(2) _cell_measurement_reflns_used 24 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 15.67 _cell_measurement_theta_min 10.86 _cell_volume 778.8(4) _computing_cell_refinement 'MSC/AFC Diffractometer Control Software' _computing_data_collection ;MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1989a) ; _computing_data_reduction 'TEXSAN (Molecular Structure Corporation, 1989b)' _computing_molecular_graphics 'ORTEX (McArdle, 1995)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS86 (Sheldrick, 1990)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.997 _diffrn_measured_fraction_theta_max 0.997 _diffrn_measurement_device_type 'Rigaku AFC-5S' _diffrn_measurement_method '2\q/\w scan' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.012 _diffrn_reflns_av_sigmaI/netI 0.018 _diffrn_reflns_limit_h_max 11 _diffrn_reflns_limit_h_min -11 _diffrn_reflns_limit_k_max 23 _diffrn_reflns_limit_k_min -23 _diffrn_reflns_limit_l_max 11 _diffrn_reflns_limit_l_min -11 _diffrn_reflns_number 11308 _diffrn_reflns_theta_full 32.57 _diffrn_reflns_theta_max 32.57 _diffrn_reflns_theta_min 3.74 _diffrn_standards_decay_% <2 _diffrn_standards_interval_count 150 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.334 _exptl_absorpt_correction_T_max 0.914 _exptl_absorpt_correction_T_min 0.823 _exptl_absorpt_correction_type analytical _exptl_absorpt_process_details '(de Meulenar & Tompa, 1965)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.460 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 356 _exptl_crystal_size_max 0.7 _exptl_crystal_size_mid 0.6 _exptl_crystal_size_min 0.3 _refine_diff_density_max 0.514 _refine_diff_density_min -0.531 _refine_ls_extinction_coef 0.093(7) _refine_ls_extinction_method 'SHELXL97 (Sheldrick, 1997)' _refine_ls_goodness_of_fit_ref 1.085 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 261 _refine_ls_number_reflns 5654 _refine_ls_number_restraints 18 _refine_ls_restrained_S_all 1.087 _refine_ls_R_factor_all 0.045 _refine_ls_R_factor_gt 0.035 _refine_ls_shift/su_max 0.003 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.0672P)^2^+0.0863P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref 0.119 _reflns_number_gt 4593 _reflns_number_total 5654 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file na1410.cif _[local]_cod_data_source_block II _cod_depositor_comments ; The following automatic conversions were performed: '_refine_ls_weighting_scheme' value 'calc w = 1/[\s^2^(Fo^2^)+(0.0672P)^2^+0.0863P] where P=(Fo^2^+2Fc^2^)/3' was changed to 'calc'. New tag '_refine_ls_weighting_details' was created. The value of the new tag was set to 'w = 1/[\s^2^(Fo^2^)+(0.0672P)^2^+0.0863P] where P=(Fo^2^+2Fc^2^)/3'. Automatic conversion script Id: cif_fix_values 3143 2015-03-26 13:38:13Z robertas ; _cod_database_code 2008804 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol P1 0.52996(4) 0.650631(18) 0.29385(4) 0.03468(9) Uani d . 1 . . P S2 0.54863(7) 0.71081(3) 0.55231(6) 0.06044(12) Uani d . 1 . . S O61 -0.26871(12) 0.87616(6) 0.14186(16) 0.0449(2) Uani d . 1 . . O O11 0.45593(14) 0.54774(6) 0.22307(17) 0.0502(2) Uani d . 1 . . O O13 0.72601(13) 0.64877(7) 0.27349(16) 0.0484(2) Uani d . 1 . . O C64 0.12146(15) 0.92034(7) 0.20488(17) 0.03426(19) Uani d . 1 . . C O641 0.28867(13) 0.94019(6) 0.23019(18) 0.0506(2) Uani d . 1 . . O C70 0.00297(15) 0.98795(7) 0.23918(16) 0.03366(19) Uani d . 1 . . C C63 0.02445(15) 0.82918(7) 0.14034(17) 0.03392(19) Uani d . 1 . . C C69 -0.18566(15) 0.96386(7) 0.20880(17) 0.0360(2) Uani d . 1 . . C N3 0.40411(16) 0.69622(7) 0.10391(16) 0.0426(2) Uani d . 1 . . N O51 0.03115(16) 0.67352(6) 0.0554(2) 0.0619(3) Uani d . 1 . . O C5 0.11637(17) 0.74855(7) 0.10441(19) 0.0389(2) Uani d . 1 . . C N4 0.30115(15) 0.76523(7) 0.13184(18) 0.0420(2) Uani d . 1 . . N C65 0.07708(19) 1.07850(8) 0.3071(2) 0.0428(2) Uani d . 1 . . C C68 -0.30100(19) 1.02584(9) 0.2444(2) 0.0448(3) Uani d . 1 . . C C67 -0.2231(2) 1.11439(9) 0.3118(2) 0.0502(3) Uani d . 1 . . C C66 -0.0354(2) 1.14052(9) 0.3416(2) 0.0506(3) Uani d . 1 . . C C62 -0.16041(16) 0.81414(8) 0.1132(2) 0.0406(2) Uani d . 1 . . C H621 -0.229(2) 0.7562(11) 0.073(3) 0.047(4) Uiso d . 1 . . H C12 0.2866(3) 0.51252(12) 0.2354(4) 0.0705(5) Uani d D 1 . . C H121 0.276(4) 0.4525(8) 0.185(4) 0.106(8) Uiso d D 1 . . H H122 0.175(3) 0.5385(15) 0.173(3) 0.105(8) Uiso d D 1 . . H H123 0.314(4) 0.5244(18) 0.375(2) 0.122(11) Uiso d D 1 . . H C31 0.3551(3) 0.65412(14) -0.1059(2) 0.0632(4) Uani d D 1 . . C H311 0.424(3) 0.6059(10) -0.113(3) 0.075(6) Uiso d D 1 . . H H312 0.347(3) 0.6929(13) -0.189(3) 0.094(7) Uiso d D 1 . . H H313 0.227(2) 0.6233(13) -0.172(3) 0.093(8) Uiso d D 1 . . H C14 0.8779(2) 0.60347(14) 0.3914(4) 0.0724(5) Uani d D 1 . . C H141 0.846(3) 0.5431(8) 0.332(3) 0.096(8) Uiso d D 1 . . H H142 0.891(4) 0.607(2) 0.524(2) 0.146(13) Uiso d D 1 . . H H143 0.996(2) 0.6266(12) 0.403(3) 0.077(6) Uiso d D 1 . . H H41 0.358(3) 0.8171(13) 0.166(3) 0.062(5) Uiso d . 1 . . H H671 -0.293(3) 1.1576(14) 0.349(3) 0.073(6) Uiso d . 1 . . H H651 0.199(3) 1.0929(13) 0.322(3) 0.069(6) Uiso d . 1 . . H H681 -0.426(2) 1.0041(11) 0.225(3) 0.049(4) Uiso d . 1 . . H H661 0.020(3) 1.2011(14) 0.383(3) 0.069(5) Uiso d . 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 P1 0.03483(14) 0.03304(14) 0.04313(16) 0.00673(9) 0.02218(11) 0.01236(10) S2 0.0770(3) 0.0649(2) 0.04538(19) 0.01395(19) 0.03348(18) 0.01061(16) O61 0.0321(4) 0.0391(4) 0.0670(6) 0.0026(3) 0.0253(4) 0.0125(4) O11 0.0519(5) 0.0337(4) 0.0738(6) 0.0057(3) 0.0356(5) 0.0139(4) O13 0.0375(4) 0.0534(5) 0.0677(6) 0.0143(4) 0.0302(4) 0.0260(4) C64 0.0308(4) 0.0336(4) 0.0413(5) 0.0025(3) 0.0185(4) 0.0097(4) O641 0.0365(4) 0.0396(4) 0.0806(7) -0.0009(3) 0.0339(4) 0.0076(4) C70 0.0336(4) 0.0325(4) 0.0376(5) 0.0037(3) 0.0177(4) 0.0099(4) C63 0.0315(4) 0.0316(4) 0.0415(5) 0.0035(3) 0.0181(4) 0.0108(4) C69 0.0334(5) 0.0372(5) 0.0412(5) 0.0058(4) 0.0185(4) 0.0125(4) N3 0.0468(5) 0.0432(5) 0.0445(5) 0.0189(4) 0.0239(4) 0.0142(4) O51 0.0533(5) 0.0331(4) 0.1017(9) 0.0028(4) 0.0395(6) 0.0105(5) C5 0.0380(5) 0.0334(5) 0.0478(6) 0.0066(4) 0.0205(4) 0.0118(4) N4 0.0382(5) 0.0339(4) 0.0605(6) 0.0108(4) 0.0259(4) 0.0155(4) C65 0.0438(6) 0.0343(5) 0.0511(6) 0.0016(4) 0.0229(5) 0.0086(4) C68 0.0402(6) 0.0493(6) 0.0530(7) 0.0145(5) 0.0258(5) 0.0166(5) C67 0.0583(7) 0.0453(6) 0.0553(7) 0.0207(6) 0.0309(6) 0.0147(5) C66 0.0614(8) 0.0342(5) 0.0578(7) 0.0084(5) 0.0289(6) 0.0089(5) C62 0.0341(5) 0.0343(5) 0.0551(6) 0.0015(4) 0.0213(5) 0.0113(4) C12 0.0524(8) 0.0482(8) 0.1200(17) 0.0023(6) 0.0410(10) 0.0345(9) C31 0.0717(10) 0.0805(11) 0.0446(7) 0.0309(9) 0.0299(7) 0.0174(7) C14 0.0431(7) 0.0734(11) 0.1066(15) 0.0254(7) 0.0293(9) 0.0403(11) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' P P 0.1023 0.0942 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _diffrn_standard_refln_index_h _diffrn_standard_refln_index_k _diffrn_standard_refln_index_l 0 -2 4 0 -3 4 4 0 0 loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag O13 P1 O11 99.10(10) yes O13 P1 N3 99.40(10) yes O11 P1 N3 108.20(10) yes O13 P1 S2 116.70(10) yes O11 P1 S2 116.50(10) yes N3 P1 S2 114.60(10) yes C62 O61 C69 118.20(10) no C12 O11 P1 121.30(10) yes C14 O13 P1 121.10(10) yes O641 C64 C63 123.90(10) no O641 C64 C70 121.80(10) no C63 C64 C70 114.30(10) no C69 C70 C65 118.00(10) no C69 C70 C64 120.70(10) no C65 C70 C64 121.30(10) no C62 C63 C64 119.50(10) no C62 C63 C5 115.70(10) no C64 C63 C5 124.80(10) no O61 C69 C70 121.30(10) no O61 C69 C68 116.20(10) no C70 C69 C68 122.40(10) no N4 N3 C31 115.70(10) yes N4 N3 P1 120.40(10) yes C31 N3 P1 122.20(10) yes O51 C5 N4 122.90(10) yes O51 C5 C63 122.50(10) yes N4 C5 C63 114.60(10) yes C5 N4 N3 120.70(10) yes C5 N4 H41 122.0(10) no N3 N4 H41 117.0(10) no C66 C65 C70 120.30(10) no C66 C65 H651 123.0(10) no C70 C65 H651 116.0(10) no C67 C68 C69 118.00(10) no C67 C68 H681 124.0(10) no C69 C68 H681 118.0(10) no C68 C67 C66 120.80(10) no C68 C67 H671 120.0(10) no C66 C67 H671 119.0(10) no C65 C66 C67 120.50(10) no C65 C66 H661 117.0(10) no C67 C66 H661 122.0(10) no O61 C62 C63 125.80(10) no O61 C62 H621 111.0(10) no C63 C62 H621 123.0(10) no O11 C12 H121 103(2) no O11 C12 H122 115(2) no H121 C12 H122 116(2) no O11 C12 H123 108(2) no H121 C12 H123 110(2) no H122 C12 H123 105(2) no N3 C31 H311 111.0(10) no N3 C31 H312 115(2) no H311 C31 H312 118(2) no N3 C31 H313 110(2) no H311 C31 H313 99(2) no H312 C31 H313 102(2) no O13 C14 H141 109(2) no O13 C14 H142 114(2) no H141 C14 H142 103(2) no O13 C14 H143 110.0(10) no H141 C14 H143 113(2) no H142 C14 H143 109(2) no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag P1 O13 . 1.5750(10) yes P1 O11 . 1.5700(10) yes P1 N3 . 1.6470(10) yes P1 S2 . 1.9110(10) yes O61 C62 . 1.336(2) no O61 C69 . 1.3800(10) no O11 C12 . 1.438(2) yes O13 C14 . 1.430(2) no C64 O641 . 1.2310(10) no C64 C63 . 1.462(2) no C64 C70 . 1.466(2) no C70 C69 . 1.390(2) no C70 C65 . 1.403(2) no C63 C62 . 1.348(2) no C63 C5 . 1.491(2) yes C69 C68 . 1.391(2) no N3 N4 . 1.3860(10) yes N3 C31 . 1.446(2) yes O51 C5 . 1.221(2) yes C5 N4 . 1.350(2) yes N4 H41 . 0.84(2) no C65 C66 . 1.373(2) no C65 H651 . 0.91(2) no C68 C67 . 1.382(2) no C68 H681 . 0.95(2) no C67 C66 . 1.391(2) no C67 H671 . 0.94(2) no C66 H661 . 0.95(2) no C62 H621 . 0.95(2) no C12 H121 . 0.920(10) no C12 H122 . 0.930(10) no C12 H123 . 0.950(10) no C31 H311 . 0.940(10) no C31 H312 . 0.930(10) no C31 H313 . 0.950(10) no C14 H141 . 0.930(10) no C14 H142 . 0.940(10) no C14 H143 . 0.920(10) no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N4 H41 O641 1_555 0.84(2) 2.02(2) 2.6840(10) 135(2) yes