#------------------------------------------------------------------------------ #$Date: 2025-08-18 23:52:38 +0100 (Mon, 18 Aug 2025) $ #$Revision: 301791 $ #$URL: svn://www.crystallography.net/cod/cif/2/00/89/2008976.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2008976 loop_ _publ_author_name 'Jelsch, Christian' 'Didierjean, Claude' _publ_section_title ; The oxidized form of glutathione ; _journal_issue 9 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1538 _journal_page_last 1540 _journal_paper_doi 10.1107/S0108270199007039 _journal_volume 55 _journal_year 1999 _chemical_formula_moiety 'C20 H32 N6 O12 S2, 8H2 O1' _chemical_formula_sum 'C20 H40 N6 O20 S2' _chemical_formula_weight 756.76 _chemical_name_common Glutathione _chemical_name_systematic ; \g-L-Glutamyl-L-cysteinyl-glycine ; _space_group_IT_number 18 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2 2ab' _symmetry_space_group_name_H-M 'P 21 21 2' _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 9.4742(2) _cell_length_b 16.6161(4) _cell_length_c 10.8918(7) _cell_measurement_reflns_used 57 _cell_measurement_temperature 100(2) _cell_measurement_theta_max 22 _cell_measurement_theta_min 3 _cell_volume 1714.63(12) _computing_cell_refinement 'DENZO and SCALEPACK (Otwinowski & Minor, 1997)' _computing_data_collection 'COLLECT (Nonius, 1998)' _computing_data_reduction 'DENZO and SCALEPACK' _computing_molecular_graphics 'ORTEP (Johnson, 1970)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SIR92 (Altomare et al., 1994)' _diffrn_ambient_temperature 100(2) _diffrn_measured_fraction_theta_full 0.927 _diffrn_measured_fraction_theta_max 0.927 _diffrn_measurement_device_type 'Nonius Kappa-CCD' _diffrn_measurement_method oscillation _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type AgK\a _diffrn_radiation_wavelength 0.56087 _diffrn_reflns_av_R_equivalents 0.051 _diffrn_reflns_av_sigmaI/netI 0.0283 _diffrn_reflns_limit_h_max 13 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 25 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 16 _diffrn_reflns_limit_l_min 0 _diffrn_reflns_number 23453 _diffrn_reflns_theta_full 25.60 _diffrn_reflns_theta_max 25.6 _diffrn_reflns_theta_min 1.48 _exptl_absorpt_coefficient_mu 0.134 _exptl_absorpt_correction_type none _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.466 _exptl_crystal_density_method 'not measured' _exptl_crystal_description 'Rectangular prism' _exptl_crystal_F_000 804 _exptl_crystal_size_max 0.30 _exptl_crystal_size_mid 0.22 _exptl_crystal_size_min 0.20 _refine_diff_density_max 0.394 _refine_diff_density_min -0.288 _refine_ls_abs_structure_details 'Flack, H. D. (1983). Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack 0.30(12) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.108 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 261 _refine_ls_number_reflns 3430 _refine_ls_number_restraints 38 _refine_ls_restrained_S_all 1.105 _refine_ls_R_factor_all 0.040 _refine_ls_R_factor_gt 0.038 _refine_ls_shift/su_max 0.034 _refine_ls_shift/su_mean 0.006 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.0592P)^2^+0.3916P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref 0.100 _reflns_number_gt 3263 _reflns_number_total 3430 _reflns_threshold_expression I>2\s(I) _cod_data_source_file sx1077.cif _cod_data_source_block sx1077 _cod_depositor_comments ; The following automatic conversions were performed: '_refine_ls_weighting_scheme' value 'calc w = 1/[\s^2^(Fo^2^)+(0.0592P)^2^+0.3916P] where P = (Fo^2^+2Fc^2^)/3' was changed to 'calc'. New tag '_refine_ls_weighting_details' was created. The value of the new tag was set to 'w = 1/[\s^2^(Fo^2^)+(0.0592P)^2^+0.3916P] where P = (Fo^2^+2Fc^2^)/3'. Automatic conversion script Id: cif_fix_values 3143 2015-03-26 13:38:13Z robertas ; _cod_database_code 2008976 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z' 'x+1/2, -y+1/2, -z' '-x, -y, z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol N1 0.22896(17) 0.02466(9) 0.27529(14) 0.0180(3) Uani d . 1 . . N H11 0.3090 0.0005 0.2534 0.027 Uiso calc R 1 . . H H21 0.1582 -0.0105 0.2714 0.027 Uiso calc R 1 . . H H31 0.2368 0.0431 0.3517 0.027 Uiso calc R 1 . . H O11 -0.01772(14) 0.09864(7) 0.30275(12) 0.0163(2) Uani d . 1 . . O O21 0.04667(16) 0.20487(8) 0.19046(13) 0.0201(3) Uani d . 1 . . O CA1 0.20031(17) 0.09282(9) 0.19074(13) 0.0102(3) Uani d . 1 . . C HA1 0.2785 0.1312 0.1975 0.012 Uiso calc R 1 . . H CB1 0.18965(17) 0.06584(10) 0.05608(14) 0.0125(3) Uani d . 1 . . C HB11 0.1291 0.0189 0.0507 0.015 Uiso calc R 1 . . H HB21 0.1471 0.1085 0.0078 0.015 Uiso calc R 1 . . H CG1 0.33524(18) 0.04543(11) 0.00308(14) 0.0141(3) Uani d . 1 . . C HG11 0.3966 0.0918 0.0118 0.017 Uiso calc R 1 . . H HG21 0.3761 0.0016 0.0499 0.017 Uiso calc R 1 . . H CD1 0.32847(17) 0.02154(9) -0.13137(14) 0.0114(3) Uani d . 1 . . C C1 0.06481(17) 0.13542(10) 0.23192(15) 0.0120(3) Uani d . 1 . . C OE1 0.34071(14) -0.04954(7) -0.16451(11) 0.0153(2) Uani d . 1 . . O N2 0.30892(15) 0.08238(8) -0.21052(12) 0.0119(2) Uani d . 1 . . N H2 0.3156 0.1310 -0.1840 0.018 Uiso calc R 1 . . H CA2 0.27698(17) 0.06915(9) -0.33919(14) 0.0111(3) Uani d . 1 . . C HA2 0.2847 0.0113 -0.3552 0.013 Uiso calc R 1 . . H CB2 0.12553(19) 0.09546(11) -0.37230(16) 0.0165(3) Uani d . 1 . . C HB12 0.1030 0.0752 -0.4535 0.020 Uiso calc R 1 . . H HB22 0.1225 0.1538 -0.3759 0.020 Uiso calc R 1 . . H SG2 -0.00838(5) 0.06116(3) -0.26597(4) 0.01921(10) Uani d . 1 . . S C2 0.37960(18) 0.11251(10) -0.42513(16) 0.0137(3) Uani d . 1 . . C O2 0.34950(17) 0.12063(10) -0.53562(14) 0.0282(4) Uani d . 1 . . O N3 0.49815(17) 0.14094(8) -0.37608(12) 0.0150(3) Uani d . 1 . . N H3 0.5162 0.1301 -0.3005 0.018 Uiso calc R 1 . . H CA3 0.5979(2) 0.18923(10) -0.44448(19) 0.0199(4) Uani d . 1 . . C HA13 0.6488 0.2235 -0.3875 0.024 Uiso calc R 1 . . H HA23 0.5460 0.2239 -0.5001 0.024 Uiso calc R 1 . . H C3 0.70320(18) 0.14125(9) -0.51764(14) 0.0112(3) Uani d . 1 . . C O13 0.70174(18) 0.06905(8) -0.52456(13) 0.0249(3) Uani d . 1 . . O O23 0.79792(15) 0.18796(8) -0.57140(13) 0.0191(3) Uani d . 1 . . O H23 0.8509 0.1568 -0.6306 0.029 Uiso calc R 1 . . H O4 0.23308(18) -0.20317(8) -0.12227(16) 0.0266(3) Uani d D 1 . . O H14 0.274(3) -0.1511(10) -0.127(3) 0.040 Uiso d D 1 . . H H24 0.309(3) -0.2391(16) -0.142(3) 0.040 Uiso d D 1 . . H O5 0.29186(19) 0.24311(9) -0.11488(16) 0.0263(3) Uani d D 1 . . O H15 0.309(4) 0.2634(18) -0.0349(14) 0.039 Uiso d D 1 . . H H25 0.233(3) 0.2671(18) -0.175(2) 0.039 Uiso d D 1 . . H O6A 0.552(3) 0.118(2) 0.235(2) 0.074(11) Uani d PU 0.125(11) . . O O6B 0.6295(4) 0.11875(17) 0.1753(3) 0.0136(10) Uani d PU 0.392(7) . . O O6C 0.5304(3) 0.0667(2) 0.2536(2) 0.0143(9) Uani d PU 0.483(9) . . O O7A 0.4557(3) 0.22928(18) 0.2943(3) 0.0211(8) Uani d PU 0.472(6) . . O O7B 0.5214(4) 0.2276(2) 0.2137(4) 0.0389(11) Uani d PU 0.528(6) . . O loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 0.0115(7) 0.0211(6) 0.0213(6) 0.0062(5) 0.0052(6) 0.0106(5) O11 0.0120(6) 0.0161(5) 0.0208(5) 0.0018(4) 0.0073(5) -0.0003(4) O21 0.0233(7) 0.0164(5) 0.0205(6) 0.0078(5) 0.0056(5) 0.0036(5) CA1 0.0086(7) 0.0125(6) 0.0097(5) 0.0015(5) 0.0012(5) 0.0014(5) CB1 0.0069(7) 0.0189(6) 0.0118(6) 0.0016(6) 0.0008(5) -0.0037(5) CG1 0.0071(7) 0.0230(7) 0.0123(6) 0.0024(6) -0.0001(5) -0.0043(5) CD1 0.0050(6) 0.0162(6) 0.0131(6) 0.0004(5) 0.0016(5) -0.0020(5) C1 0.0108(7) 0.0146(6) 0.0105(5) 0.0020(5) -0.0001(5) -0.0020(5) OE1 0.0163(6) 0.0134(5) 0.0161(5) 0.0015(4) 0.0007(5) -0.0014(4) N2 0.0106(6) 0.0117(5) 0.0134(5) -0.0005(4) 0.0015(5) -0.0034(4) CA2 0.0085(7) 0.0123(6) 0.0125(6) -0.0016(5) 0.0009(5) 0.0002(5) CB2 0.0093(7) 0.0207(7) 0.0194(7) -0.0012(6) -0.0005(6) 0.0004(6) SG2 0.00873(19) 0.0239(2) 0.02495(19) -0.00352(15) 0.00342(16) -0.00504(16) C2 0.0106(7) 0.0126(6) 0.0178(7) -0.0001(5) 0.0023(6) 0.0040(5) O2 0.0203(7) 0.0421(9) 0.0222(7) -0.0115(7) -0.0061(6) 0.0205(6) N3 0.0111(6) 0.0171(6) 0.0167(5) -0.0040(5) 0.0058(6) -0.0031(5) CA3 0.0149(8) 0.0119(6) 0.0329(9) -0.0038(6) 0.0135(7) -0.0055(6) C3 0.0113(7) 0.0132(6) 0.0089(5) -0.0004(5) 0.0020(5) -0.0009(5) O13 0.0367(9) 0.0118(5) 0.0262(6) 0.0004(6) 0.0198(6) 0.0008(5) O23 0.0154(6) 0.0155(5) 0.0263(6) -0.0035(5) 0.0115(5) -0.0031(5) O4 0.0275(8) 0.0153(5) 0.0370(8) 0.0004(5) -0.0026(7) -0.0017(5) O5 0.0250(8) 0.0208(6) 0.0332(8) -0.0006(6) 0.0062(6) -0.0044(6) O6A 0.09(2) 0.09(2) 0.043(12) 0.021(16) -0.015(12) -0.020(13) O6B 0.0130(18) 0.0092(13) 0.0185(17) 0.0007(10) -0.0036(12) -0.0005(10) O6C 0.0107(13) 0.0215(15) 0.0106(11) 0.0050(9) -0.0003(8) -0.0004(9) O7A 0.0213(16) 0.0230(13) 0.0189(14) -0.0015(11) 0.0026(11) 0.0038(10) O7B 0.0268(18) 0.0315(16) 0.058(2) 0.0011(13) 0.0024(16) 0.0080(15) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0015 0.0009 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0056 0.0036 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0030 0.0019 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.0826 0.0763 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag N1 CA1 C1 . 108.89(13) ? N1 CA1 CB1 . 112.42(13) ? C1 CA1 CB1 . 111.03(13) ? CG1 CB1 CA1 . 111.38(13) ? CD1 CG1 CB1 . 112.51(13) ? OE1 CD1 N2 . 122.92(15) ? OE1 CD1 CG1 . 121.70(14) ? N2 CD1 CG1 . 115.38(13) ? O21 C1 O11 . 125.77(16) ? O21 C1 CA1 . 115.81(15) ? O11 C1 CA1 . 118.42(14) ? CD1 N2 CA2 . 122.38(13) ? N2 CA2 C2 . 112.78(13) ? N2 CA2 CB2 . 112.14(14) ? C2 CA2 CB2 . 108.34(13) ? CA2 CB2 SG2 . 114.41(12) y CB2 SG2 SG2 4 105.03(6) y O2 C2 N3 . 122.92(16) ? O2 C2 CA2 . 119.82(16) ? N3 C2 CA2 . 117.26(14) ? C2 N3 CA3 . 122.80(15) ? N3 CA3 C3 . 114.32(14) ? O13 C3 O23 . 124.43(16) ? O13 C3 CA3 . 123.65(16) ? O23 C3 CA3 . 111.91(13) ? O6C O6A O6B . 109(3) ? O6A O6B O6C . 34(2) ? O6A O6C O6B . 37.0(18) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag N1 CA1 . 1.485(2) ? O11 C1 . 1.257(2) y O21 C1 . 1.251(2) y CA1 C1 . 1.533(2) ? CA1 CB1 . 1.537(2) ? CB1 CG1 . 1.533(2) ? CG1 CD1 . 1.519(2) ? CD1 OE1 . 1.2405(19) ? CD1 N2 . 1.341(2) ? N2 CA2 . 1.451(2) ? CA2 C2 . 1.530(2) ? CA2 CB2 . 1.543(2) y CB2 SG2 . 1.8098(19) y SG2 SG2 4 2.0387(9) y C2 O2 . 1.244(2) ? C2 N3 . 1.330(2) ? N3 CA3 . 1.446(2) ? CA3 C3 . 1.505(2) ? C3 O13 . 1.2021(19) y C3 O23 . 1.323(2) y O6A O6C . 0.90(4) ? O6A O6B . 0.98(3) ? O6B O6C . 1.535(4) ? O7A O7B . 1.076(5) ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N1 H11 O6C 4_655 0.89 1.89 2.750(3) 162.3 N1 H11 O6B 4_655 0.89 2.23 2.943(3) 136.3 N1 H11 O6C . 0.89 2.37 2.949(3) 123.0 N1 H11 O6A 4_655 0.89 2.38 3.18(3) 150.2 N1 H21 O11 4 0.89 2.01 2.880(2) 165.8 N1 H31 O2 1_556 0.89 2.08 2.844(2) 144.1 N2 H2 O5 . 0.86 2.02 2.871(2) 169.2 N3 H3 OE1 4_655 0.86 2.41 3.154(2) 144.6 O23 H23 O11 1_654 0.97 1.74 2.6707(18) 161.6 O4 H14 OE1 . 0.950(10) 1.848(12) 2.7870(19) 169(3) O4 H24 O21 2_545 0.956(10) 1.739(11) 2.691(2) 173(3) O5 H15 O4 2 0.949(10) 1.845(17) 2.743(2) 157(3) O5 H25 O7B 3_455 0.944(10) 2.05(2) 2.822(4) 138(3) O5 H25 O6B 3_455 0.944(10) 2.14(3) 2.840(4) 130(3) O5 H25 O6A 3_455 0.944(10) 2.65(5) 3.49(4) 149(3) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion _geom_torsion_publ_flag N1 CA1 CB1 CG1 . . -73.90(17) ? C1 CA1 CB1 CG1 . . 163.83(13) ? CA1 CB1 CG1 CD1 . . -177.87(13) ? CB1 CG1 CD1 OE1 . . -104.97(19) ? CB1 CG1 CD1 N2 . . 75.21(19) ? N1 CA1 C1 O21 . . 162.35(15) ? CB1 CA1 C1 O21 . . -73.36(18) ? N1 CA1 C1 O11 . . -17.9(2) ? CB1 CA1 C1 O11 . . 106.43(17) ? OE1 CD1 N2 CA2 . . 10.5(3) ? CG1 CD1 N2 CA2 . . -169.65(14) y CD1 N2 CA2 C2 . . -125.57(16) y CD1 N2 CA2 CB2 . . 111.79(17) ? N2 CA2 CB2 SG2 . . -46.55(16) ? C2 CA2 CB2 SG2 . . -171.67(11) ? CA2 CB2 SG2 SG2 . 4 -58.30(13) y CB2 SG2 SG2 CB2 4 4 -97.0(4) y N2 CA2 C2 O2 . . -165.22(17) ? CB2 CA2 C2 O2 . . -40.5(2) ? N2 CA2 C2 N3 . . 14.0(2) y CB2 CA2 C2 N3 . . 138.75(15) ? O2 C2 N3 CA3 . . 4.9(3) ? CA2 C2 N3 CA3 . . -174.31(14) y C2 N3 CA3 C3 . . -85.2(2) y N3 CA3 C3 O13 . . 3.5(3) ? N3 CA3 C3 O23 . . -175.55(16) ? loop_ _cod_related_entry_id _cod_related_entry_database _cod_related_entry_code 1 PubChem 139056817