#------------------------------------------------------------------------------ #$Date: 2008-11-20 19:58:43 +0000 (Thu, 20 Nov 2008) $ #$Revision: 481 $ #$URL: svn://www.crystallography.net/cod/cif/2/2010359.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_2010359 _journal_name_full 'Acta Crystallographica Section C' _journal_year 1995 _journal_volume 51 _journal_page_first 96 _journal_page_last 98 _publ_section_title ; 5-Ethyl-2'-deoxycytidine, C~11~H~17~N~3~O~4~ ; loop_ _publ_author_name 'Napper, Scott' 'Stuart, Allan L.' 'Kumar, Sashi V.P.' 'Gupta, V. Sagar ' 'Delbaere, Louis T.J.' _chemical_name_common EtdCyd _chemical_formula_moiety 'C11 H17 N3 O4 ' _chemical_formula_sum 'C11 H17 N3 O4 ' _chemical_formula_weight 255.27 _symmetry_cell_setting 'Orthorhombic' _symmetry_space_group_name_H-M 'P 21 21 21' loop_ _symmetry_equiv_pos_as_xyz x,y,z 1/2+x,1/2-y,-z -x,1/2+y,1/2-z 1/2-x,-y,1/2+z _cell_length_a 4.600(3) _cell_length_b 10.0410(10) _cell_length_c 24.8350(3) _cell_angle_alpha 90.0 _cell_angle_beta 90.0 _cell_angle_gamma 90.0 _cell_volume 1147.1(8) _cell_formula_units_Z 4 _cell_measurement_temperature '123' _exptl_crystal_density_diffrn 1.478 _diffrn_ambient_temperature '-150 C' _refine_ls_R_factor_obs 0.054 _refine_ls_wR_factor_obs 0.052 loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_type_symbol O2 0.5910(9) 0.3677(3) 0.24090(10) 0.019(2) Ueq ? . O O3' 0.5434(9) -0.0846(3) 0.15470(10) 0.020(2) Ueq ? . O O4' 0.5145(9) 0.1900(3) 0.10500(10) 0.015(2) Ueq ? . O O5' 0.2877(9) 0.1723(3) 0.00020(10) 0.020(2) Ueq ? . O N1 0.3061(10) 0.3409(4) 0.1671(2) 0.014(2) Ueq ? . N N3 0.2985(11) 0.5399(4) 0.2176(2) 0.016(2) Ueq ? . N N4 0.0036(12) 0.7109(4) 0.1951(2) 0.018(2) Ueq ? . N C2 0.4042(13) 0.4167(5) 0.2099(2) 0.015(3) Ueq ? . C C4 0.0967(13) 0.5874(5) 0.1843(2) 0.014(3) Ueq ? . C C5 -0.0100(13) 0.5144(5) 0.1392(2) 0.015(3) Ueq ? . C C51 -0.2254(13) 0.5719(5) 0.0992(2) 0.017(3) Ueq ? . C C52 -0.0716(15) 0.6589(5) 0.0573(2) 0.027(3) Ueq ? . C C6 0.0991(13) 0.3917(5) 0.1325(2) 0.017(3) Ueq ? . C C1' 0.4154(12) 0.2044(5) 0.1597(2) 0.012(3) Ueq ? . C C2' 0.1906(13) 0.0953(5) 0.1679(2) 0.015(3) Ueq ? . C C3' 0.3030(14) -0.0143(5) 0.1316(2) 0.016(3) Ueq ? . C C4' 0.4129(13) 0.0638(5) 0.0836(2) 0.013(3) Ueq ? . C C5' 0.1815(13) 0.0893(5) 0.0417(2) 0.016(3) Ueq ? . C HO3' 0.471 -0.102 0.192 0.030 Uiso ? . H HO5' 0.132 0.227 -0.017 0.030 Uiso ? . H HN4A -0.177 0.735 0.175 0.027 Uiso ? . H HN4B 0.102 0.775 0.220 0.028 Uiso ? . H H51A -0.331 0.498 0.081 0.027 Uiso ? . H H51B -0.369 0.629 0.119 0.027 Uiso ? . H H52A 0.037 0.733 0.075 0.037 Uiso ? . H H52B 0.073 0.604 0.037 0.037 Uiso ? . H H52C -0.213 0.696 0.031 0.037 Uiso ? . H HC1' 0.581 0.187 0.185 0.022 Uiso ? . H HC2'A 0.180 0.067 0.206 0.025 Uiso ? . H HC2'B -0.007 0.128 0.157 0.025 Uiso ? . H HC3' 0.141 -0.075 0.121 0.026 Uiso ? . H HC4' 0.576 0.015 0.066 0.023 Uiso ? . H HC5'A 0.011 0.132 0.060 0.027 Uiso ? . H HC5'B 0.112 0.003 0.026 0.027 Uiso ? . H H6 0.029 0.336 0.102 0.027 Uiso ? . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 _atom_site_aniso_type_symbol O2 0.021(2) 0.018(2) 0.019(2) 0.005(2) -0.003(2) 0.002(2) O O3' 0.016(2) 0.020(2) 0.025(2) 0.006(2) 0.001(2) 0.004(2) O O4' 0.018(2) 0.015(2) 0.011(2) -0.003(2) -0.002(2) -0.002(2) O O5' 0.021(2) 0.024(2) 0.015(2) 0.000(2) -0.002(2) 0.005(2) O N1 0.013(3) 0.012(2) 0.016(2) 0.001(2) 0.003(2) -0.001(2) N N3 0.018(3) 0.012(2) 0.016(2) 0.001(2) 0.006(2) -0.001(2) N N4 0.018(3) 0.015(2) 0.019(2) 0.003(3) -0.004(2) -0.002(2) N C2 0.015(3) 0.013(3) 0.017(3) -0.003(3) 0.005(3) 0.001(2) C C4 0.011(3) 0.013(3) 0.020(3) 0.000(3) 0.004(3) 0.004(2) C C5 0.012(3) 0.014(3) 0.020(3) -0.004(3) 0.004(3) 0.000(2) C C51 0.014(3) 0.019(3) 0.018(3) 0.001(3) 0.001(3) 0.004(2) C C52 0.037(4) 0.021(3) 0.023(3) -0.001(4) -0.013(3) -0.002(3) C C6 0.015(3) 0.019(3) 0.017(3) -0.005(3) -0.004(3) -0.001(2) C C1' 0.008(3) 0.013(3) 0.016(2) 0.004(3) 0.003(3) -0.003(2) C C2' 0.016(3) 0.014(3) 0.015(2) 0.002(3) 0.002(3) -0.002(2) C C3' 0.015(3) 0.016(3) 0.017(2) 0.003(3) 0.000(3) 0.002(2) C C4' 0.012(3) 0.011(2) 0.017(2) -0.001(3) 0.003(3) -0.005(2) C C5' 0.010(3) 0.018(3) 0.019(3) 0.001(3) 0.003(3) -0.001(2) C loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_1 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag O2 C2 ? ? 1.255(7) y O3' C3' ? ? 1.432(7) y O4' C1' ? ? 1.439(6) y O4' C4' ? ? 1.450(6) y O5' C5' ? ? 1.413(6) y N1 C2 ? ? 1.384(7) y N1 C6 ? ? 1.380(7) y N1 C1' ? ? 1.471(6) y N3 C2 ? ? 1.343(6) y N3 C4 ? ? 1.332(7) y N4 C4 ? ? 1.339(7) y C4 C5 ? ? 1.425(7) y C5 C51 ? ? 1.517(8) y C5 C6 ? ? 1.341(7) y C51 C52 ? ? 1.533(8) y C1' C2' ? ? 1.520(8) y C2' C3' ? ? 1.514(7) y C3' C4' ? ? 1.513(7) y C4' C5' ? ? 1.510(8) y