#------------------------------------------------------------------------------ #$Date: 2016-02-19 22:18:51 +0000 (Fri, 19 Feb 2016) $ #$Revision: 176760 $ #$URL: svn://www.crystallography.net/cod/cif/2/01/09/2010996.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2010996 loop_ _publ_author_name 'Marcus, Sebastian T.' 'Gahan, Lawrence R.' 'Bernhardt, Paul V.' _publ_section_title ; The Ni^II^, Hg^II^ and Cu^II^ complexes of 12-membered-ring mixed-donor macrocycles ; _journal_issue 6 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 655 _journal_page_last 658 _journal_paper_doi 10.1107/S0108270100003942 _journal_volume 56 _journal_year 2000 _chemical_formula_iupac '[Ni(C8 H17 NO2 S)(H2 O) 2 ](NO3 )2 ' _chemical_formula_moiety 'C8 H21 N Ni O4 S 2+ , 2NO3 - ' _chemical_formula_sum 'C8 H21 N3 Ni O10 S' _chemical_formula_weight 410.05 _chemical_name_systematic ; diaqua(1,7-dioxa-4-thia-10-azacyclododecane)nickel(II) nitrate ; _space_group_IT_number 170 _symmetry_cell_setting hexagonal _symmetry_space_group_name_Hall 'P 65' _symmetry_space_group_name_H-M 'P 65' _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 120.00 _cell_formula_units_Z 6 _cell_length_a 8.7242(3) _cell_length_b 8.7242(3) _cell_length_c 37.102(3) _cell_measurement_reflns_used 25 _cell_measurement_temperature 295(2) _cell_measurement_theta_max 14 _cell_measurement_theta_min 10 _cell_volume 2445.6(2) _computing_cell_refinement 'SET4 in CAD4 Manual (Enraf-Nonius, 1988)' _computing_data_collection 'CAD4 Manual (Enraf-Nonius, 1988)' _computing_data_reduction 'XTAL3.2 (Hall et al., 1992)' _computing_molecular_graphics 'PLATON (Spek, 1990)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS86 (Sheldrick, 1990)' _diffrn_ambient_temperature 295(2) _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 1.000 _diffrn_measurement_device_type 'Enraf-Nonius CAD4' _diffrn_measurement_method '\w-2\q scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength .71073 _diffrn_reflns_av_R_equivalents .0577 _diffrn_reflns_av_sigmaI/netI .0427 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 10 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 44 _diffrn_reflns_limit_l_min 0 _diffrn_reflns_number 4648 _diffrn_reflns_theta_full 24.98 _diffrn_reflns_theta_max 24.98 _diffrn_reflns_theta_min 2.70 _diffrn_standards_decay_% <5 _diffrn_standards_interval_time 120 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 1.372 _exptl_absorpt_correction_T_max .578 _exptl_absorpt_correction_T_min .529 _exptl_absorpt_correction_type '\y scan' _exptl_absorpt_process_details '(North et al., 1968)' _exptl_crystal_colour blue _exptl_crystal_density_diffrn 1.671 _exptl_crystal_density_meas ? _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 1284 _exptl_crystal_size_max .40 _exptl_crystal_size_mid .40 _exptl_crystal_size_min .40 _refine_diff_density_max .277 _refine_diff_density_min -.255 _refine_ls_abs_structure_details 'Flack (1983)' _refine_ls_abs_structure_Flack .00(2) _refine_ls_extinction_coef .0010(4) _refine_ls_extinction_method 'SHELXL97 (Sheldrick, 1997)' _refine_ls_goodness_of_fit_ref 1.055 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 209 _refine_ls_number_reflns 1459 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.054 _refine_ls_R_factor_all .0504 _refine_ls_R_factor_gt .0321 _refine_ls_shift/su_max .000 _refine_ls_shift/su_mean .000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.0398P)^2^+0.4947P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref .0777 _reflns_number_gt 1208 _reflns_number_total 1459 _reflns_threshold_expression I>2\s(I) _cod_data_source_file fg1589.cif _cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_exptl_crystal_density_meas' value 'not measured' was changed to '?' - the value is perceived as not measured. Automatic conversion script Id: cif_fix_values 3008 2015-01-20 13:52:24Z robertas The following automatic conversions were performed: '_refine_ls_weighting_scheme' value 'calc w = 1/[\s^2^(Fo^2^)+(0.0398P)^2^+0.4947P] where P=(Fo^2^+2Fc^2^)/3' was changed to 'calc'. New tag '_refine_ls_weighting_details' was created. The value of the new tag was set to 'w = 1/[\s^2^(Fo^2^)+(0.0398P)^2^+0.4947P] where P=(Fo^2^+2Fc^2^)/3'. Automatic conversion script Id: cif_fix_values 3143 2015-03-26 13:38:13Z robertas ; _cod_database_code 2010996 _cod_database_fobs_code 2010996 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-y, x-y, z+2/3' '-x+y, -x, z+1/3' '-x, -y, z+1/2' 'y, -x+y, z+1/6' 'x-y, x, z+5/6' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol Ni1 .75006(9) .41459(9) -.000389(18) .0430(2) Uani d . 1 . . Ni S1 .9037(2) .3596(2) -.04843(5) .0582(4) Uani d . 1 . . S N1 .5691(6) .3561(7) .04125(13) .0499(12) Uani d . 1 . . N H1 .5647 .4549 .0474 .060 Uiso d R 1 . . H O1 .5335(5) .1894(6) -.02155(11) .0520(10) Uani d . 1 . . O O2 .8233(6) .2631(6) .03031(11) .0550(11) Uani d . 1 . . O O3 .6839(6) .5672(6) -.03044(14) .0691(13) Uani d . 1 . . O H31 .6741 .6504 -.0151 .083 Uiso d R 1 . . H H32 .7740 .6299 -.0482 .083 Uiso d R 1 . . H O4 .9611(6) .6302(7) .02131(16) .0859(17) Uani d . 1 . . O H41 .9223 .7046 .0323 .103 Uiso d R 1 . . H H42 1.0447 .6945 .0026 .103 Uiso d R 1 . . H C1 .7108(9) .1682(10) -.06758(19) .0665(19) Uani d . 1 . . C H1A .7253 .1670 -.0935 .080 Uiso d R 1 . . H H1B .7024 .0610 -.0578 .080 Uiso d R 1 . . H C2 .5431(10) .1692(12) -.0598(2) .072(2) Uani d . 1 . . C H2A .5421 .2658 -.0725 .086 Uiso d R 1 . . H H2B .4418 .0589 -.0676 .086 Uiso d R 1 . . H C3 .3771(9) .1881(10) -.00996(18) .067(2) Uani d . 1 . . C H3A .2736 .0756 -.0159 .080 Uiso d R 1 . . H H3B .3665 .2818 -.0217 .080 Uiso d R 1 . . H C4 .3920(8) .2148(10) .0299(2) .069(2) Uani d . 1 . . C H4A .3044 .2449 .0379 .083 Uiso d R 1 . . H H4B .3660 .1048 .0416 .083 Uiso d R 1 . . H C5 .6395(10) .3015(11) .07165(18) .0654(19) Uani d . 1 . . C H5A .5486 .2437 .0899 .078 Uiso d R 1 . . H H5B .7383 .4050 .0825 .078 Uiso d R 1 . . H C6 .6987(10) .1761(10) .05882(19) .0652(18) Uani d . 1 . . C H6A .7546 .1484 .0784 .078 Uiso d R 1 . . H H6B .5985 .0668 .0503 .078 Uiso d R 1 . . H C7 .8742(10) .1530(9) .01084(19) .0678(19) Uani d . 1 . . C H7A .7697 .0489 .0017 .081 Uiso d R 1 . . H H7B .9364 .1143 .0268 .081 Uiso d R 1 . . H C8 .9914(9) .2567(10) -.01959(19) .0635(18) Uani d . 1 . . C H8A 1.0148 .1782 -.0341 .076 Uiso d R 1 . . H H8B 1.1036 .3478 -.0099 .076 Uiso d R 1 . . H N2 .8882(8) .8688(9) .08374(19) .0651(15) Uani d . 1 . . N O5 .8887(7) .9633(9) .10823(18) .102(2) Uani d . 1 . . O O6 1.0205(10) .9026(10) .0676(2) .118(3) Uani d . 1 . . O O7 .7530(12) .7405(11) .0759(3) .156(4) Uani d . 1 . . O N3 .4020(7) .7017(7) .0053(2) .0670(18) Uani d . 1 . . N O8 .3719(11) .5637(10) .0178(2) .126(2) Uani d . 1 . . O O9 .5279(9) .7712(9) -.01627(17) .106(2) Uani d . 1 . . O O10 .3128(9) .7616(9) .0127(4) .155(4) Uani d . 1 . . O loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Ni1 .0387(4) .0429(4) .0466(4) .0197(3) .0031(3) -.0004(3) S1 .0593(9) .0608(10) .0587(10) .0332(8) .0139(8) .0024(8) N1 .047(3) .054(3) .049(3) .026(2) .004(2) -.001(2) O1 .046(2) .059(2) .050(2) .025(2) -.0055(19) -.010(2) O2 .060(3) .066(3) .049(2) .038(2) -.003(2) .000(2) O3 .075(3) .066(3) .079(3) .045(3) .021(3) .022(2) O4 .052(3) .064(3) .119(4) .011(2) .015(3) -.037(3) C1 .078(5) .082(5) .050(4) .048(4) -.004(3) -.014(4) C2 .070(5) .080(5) .069(5) .040(4) -.019(4) -.023(4) C3 .042(3) .067(4) .086(6) .024(3) -.011(3) -.009(4) C4 .041(3) .081(5) .077(5) .024(4) .012(3) .008(4) C5 .065(4) .082(5) .047(4) .035(4) .005(3) .003(3) C6 .068(4) .079(5) .053(4) .040(4) .007(3) .018(4) C7 .070(4) .077(5) .076(5) .051(4) -.014(4) -.003(4) C8 .056(4) .071(4) .074(5) .040(3) .000(3) -.008(4) N2 .060(4) .059(4) .082(4) .035(3) .010(3) .000(3) O5 .075(4) .099(4) .125(6) .040(4) .004(3) -.051(4) O6 .100(5) .109(5) .160(7) .063(4) .061(5) .016(5) O7 .122(6) .101(5) .176(8) .005(5) .031(6) -.062(5) N3 .053(3) .047(3) .094(5) .020(3) .005(3) -.012(3) O8 .131(6) .093(5) .151(6) .055(5) -.003(5) .022(5) O9 .097(5) .103(5) .099(5) .036(4) .031(4) .014(4) O10 .077(4) .093(5) .301(13) .048(4) .037(6) -.031(6) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0033 .0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N .0061 .0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0106 .0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S .1246 .1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Ni Ni .3393 1.1124 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag O4 Ni1 O3 91.9(2) yes O4 Ni1 O2 87.0(2) yes O3 Ni1 O2 178.8(2) yes O4 Ni1 N1 99.1(2) yes O3 Ni1 N1 98.0(2) yes O2 Ni1 N1 82.75(18) yes O4 Ni1 O1 178.5(2) yes O3 Ni1 O1 89.45(19) yes O2 Ni1 O1 91.66(17) yes N1 Ni1 O1 80.19(17) yes O4 Ni1 S1 98.07(15) yes O3 Ni1 S1 95.33(15) yes O2 Ni1 S1 84.27(12) yes N1 Ni1 S1 157.83(14) yes O1 Ni1 S1 82.31(12) yes C8 S1 C1 101.7(4) ? C8 S1 Ni1 94.4(2) ? C1 S1 Ni1 96.9(2) ? C5 N1 C4 112.3(6) ? C5 N1 Ni1 105.1(4) ? C4 N1 Ni1 110.0(4) ? C3 O1 C2 114.3(5) ? C3 O1 Ni1 107.9(4) ? C2 O1 Ni1 114.0(4) ? C6 O2 C7 115.0(5) ? C6 O2 Ni1 110.4(4) ? C7 O2 Ni1 116.5(4) ? C2 C1 S1 112.2(5) ? O1 C2 C1 107.9(6) ? O1 C3 C4 106.8(5) ? N1 C4 C3 112.7(5) ? N1 C5 C6 110.1(6) ? O2 C6 C5 107.1(6) ? O2 C7 C8 108.8(6) ? C7 C8 S1 114.9(5) ? O7 N2 O6 119.4(8) ? O7 N2 O5 118.9(7) ? O6 N2 O5 121.7(8) ? O10 N3 O8 120.2(9) ? O10 N3 O9 123.9(8) ? O8 N3 O9 115.9(8) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Ni1 O4 . 2.028(5) yes Ni1 O3 . 2.029(5) yes Ni1 O2 . 2.073(4) yes Ni1 N1 . 2.082(5) yes Ni1 O1 . 2.082(4) yes Ni1 S1 . 2.4185(17) yes S1 C8 . 1.795(7) ? S1 C1 . 1.821(7) ? N1 C5 . 1.473(9) ? N1 C4 . 1.476(8) ? O1 C3 . 1.426(7) ? O1 C2 . 1.438(8) ? O2 C6 . 1.432(8) ? O2 C7 . 1.438(8) ? C1 C2 . 1.495(9) ? C3 C4 . 1.494(10) ? C5 C6 . 1.502(11) ? C7 C8 . 1.488(10) ? N2 O7 . 1.187(10) ? N2 O6 . 1.200(8) ? N2 O5 . 1.225(8) ? N3 O10 . 1.166(10) ? N3 O8 . 1.190(9) ? N3 O9 . 1.245(9) ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N1 H1 O7 . .91 2.44 3.177(9) 138.7 N1 H1 O8 . .91 2.56 3.180(9) 126.2 O3 H31 O9 . .96 2.02 2.779(8) 134.4 O3 H31 O8 . .96 2.65 3.244(10) 120.6 O3 H32 O5 6_654 .96 2.00 2.734(7) 131.6 O3 H32 O7 6_654 .96 2.40 3.347(9) 171.1 O3 H32 N2 6_654 .96 2.55 3.465(8) 159.6 O4 H41 O6 . .96 1.99 2.763(9) 136.3 O4 H41 O7 . .96 2.32 3.174(10) 148.5 O4 H41 N2 . .96 2.49 3.380(8) 153.8 O4 H42 O10 1_655 .96 2.14 2.704(8) 116.1 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion O4 Ni1 S1 C8 78.3(3) O3 Ni1 S1 C8 171.0(3) O2 Ni1 S1 C8 -7.8(3) N1 Ni1 S1 C8 -62.2(4) O1 Ni1 S1 C8 -100.2(3) O4 Ni1 S1 C1 -179.3(3) O3 Ni1 S1 C1 -86.5(3) O2 Ni1 S1 C1 94.6(3) N1 Ni1 S1 C1 40.3(5) O1 Ni1 S1 C1 2.2(3) O4 Ni1 N1 C5 -66.7(5) O3 Ni1 N1 C5 -160.0(4) O2 Ni1 N1 C5 19.0(4) O1 Ni1 N1 C5 112.0(4) S1 Ni1 N1 C5 73.6(6) O4 Ni1 N1 C4 172.2(4) O3 Ni1 N1 C4 79.0(5) O2 Ni1 N1 C4 -102.0(4) O1 Ni1 N1 C4 -9.1(4) S1 Ni1 N1 C4 -47.4(6) O4 Ni1 O1 C3 95(7) O3 Ni1 O1 C3 -64.4(4) O2 Ni1 O1 C3 116.2(4) N1 Ni1 O1 C3 33.8(4) S1 Ni1 O1 C3 -159.8(4) O4 Ni1 O1 C2 -137(7) O3 Ni1 O1 C2 63.7(4) O2 Ni1 O1 C2 -115.8(4) N1 Ni1 O1 C2 161.9(4) S1 Ni1 O1 C2 -31.8(4) O4 Ni1 O2 C6 109.6(4) O3 Ni1 O2 C6 137(9) N1 Ni1 O2 C6 10.0(4) O1 Ni1 O2 C6 -69.9(4) S1 Ni1 O2 C6 -152.0(4) O4 Ni1 O2 C7 -116.8(5) O3 Ni1 O2 C7 -89(9) N1 Ni1 O2 C7 143.7(5) O1 Ni1 O2 C7 63.8(4) S1 Ni1 O2 C7 -18.3(4) C8 S1 C1 C2 121.5(6) Ni1 S1 C1 C2 25.5(6) C3 O1 C2 C1 -178.5(6) Ni1 O1 C2 C1 56.8(7) S1 C1 C2 O1 -53.0(8) C2 O1 C3 C4 -178.7(6) Ni1 O1 C3 C4 -50.7(6) C5 N1 C4 C3 -132.8(6) Ni1 N1 C4 C3 -16.2(7) O1 C3 C4 N1 44.5(8) C4 N1 C5 C6 74.6(7) Ni1 N1 C5 C6 -45.0(7) C7 O2 C6 C5 -170.8(5) Ni1 O2 C6 C5 -36.4(7) N1 C5 C6 O2 55.4(8) C6 O2 C7 C8 175.4(5) Ni1 O2 C7 C8 43.8(6) O2 C7 C8 S1 -52.6(7) C1 S1 C8 C7 -64.2(6) Ni1 S1 C8 C7 33.8(5)