#------------------------------------------------------------------------------ #$Date: 2012-02-03 17:16:24 +0000 (Fri, 03 Feb 2012) $ #$Revision: 32112 $ #$URL: svn://www.crystallography.net/cod/cif/2/01/11/2011132.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2011132 loop_ _publ_author_name 'Leban, Ivan' '\O-isopropylidene-5-O-(4-nitrobenzoyl)-\a-D-ribofuranosyl]-4-methoxycarbonyl-1H-1,2,3-triazol-5-yl}acetate ; _journal_issue 7 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 890 _journal_page_last 891 _journal_volume 56 _journal_year 2000 _chemical_formula_sum 'C22 H24 N4 O11' _chemical_formula_weight 520.45 _chemical_melting_point 205.0(10) _chemical_name_systematic ; methyl {1-[2,3-O-isopropylidene-5-O-(4-nitrobenzoyl)-\a-D- ribofuranosyl]-4-methoxycarbonyl-1,2,3-triazol-5-yl} acetate ; _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 8.845(2) _cell_length_b 9.931(2) _cell_length_c 27.325(5) _cell_measurement_reflns_used 28700 _cell_measurement_temperature 150(2) _cell_measurement_theta_max 25 _cell_measurement_theta_min 3 _cell_volume 2400.2(8) _computing_cell_refinement ; DENZO and SCALEPACK (Otwinowski & Minor, 1997) ; _computing_data_collection ; KappaCCD Reference Manual (Nonius, 1998) ; _computing_data_reduction ; DENZO and SCALEPACK (Otwinowski & Minor, 1997) ; _computing_molecular_graphics ; ORTEPII (Johnson, 1971), PLATON (Spek, 1998), ORTEP-3 (Farrugia, 1999) ; _computing_publication_material 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-86 (Sheldrick, 1990)' _diffrn_ambient_temperature 150(2) _diffrn_measured_fraction_theta_full .997 _diffrn_measured_fraction_theta_max .997 _diffrn_measurement_device_type 'Nonius KappaCCD diffractometer' _diffrn_measurement_method ;301 frames in 5 sets of \w scans. Rotation/frame=2\%. Crystal-detector distance=45 mm. Measuring time=200 s/\%. ; _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength .71073 _diffrn_reflns_av_R_equivalents .057 _diffrn_reflns_av_sigmaI/netI .043 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min -11 _diffrn_reflns_limit_l_max 31 _diffrn_reflns_limit_l_min -32 _diffrn_reflns_number 24551 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 25.0 _diffrn_reflns_theta_min 2.18 _exptl_absorpt_coefficient_mu .117 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.440 _exptl_crystal_density_meas 1.42(5) _exptl_crystal_density_method flotation _exptl_crystal_description needles _exptl_crystal_F_000 1088 _exptl_crystal_size_max .35 _exptl_crystal_size_mid .13 _exptl_crystal_size_min .13 _refine_diff_density_max .535 _refine_diff_density_min -.243 _refine_ls_extinction_coef .0067(16) _refine_ls_extinction_method SHELXL-97 _refine_ls_goodness_of_fit_ref 1.088 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 335 _refine_ls_number_reflns 2358 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.088 _refine_ls_R_factor_all .0557 _refine_ls_R_factor_gt .0491 _refine_ls_shift/su_max .038 _refine_ls_shift/su_mean .003 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_scheme 'calc w=1/[\s^2^(Fo^2^)+(0.0546P)^2^+1.5179P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_wR_factor_ref .1221 _reflns_number_gt 2111 _reflns_number_total 2358 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file jz1388.cif _[local]_cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_chemical_melting_point' value '204-206' was changed to '205.0(10)' - the average value was taken and precision was estimated. Automatic conversion script Id: cif_fix_values 1646 2011-03-28 12:23:43Z adriana The following automatic conversions were performed: '_chemical_melting_point' value '204-206' was changed to '205.0(10)' - the average value was taken and precision was estimated. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2011132 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' 'x+1/2, -y+1/2, -z' '-x, y+1/2, -z+1/2' '-x+1/2, -y, z+1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol C1' -.6307(4) -.8855(4) -.18894(14) .0376(9) Uani d . 1 . . C H1 -.6961 -.8915 -.2187 .056 Uiso calc R 1 . . H C2' -.4774(4) -.8216(4) -.20306(14) .0378(9) Uani d . 1 . . C H2 -.4650 -.8148 -.2393 .057 Uiso calc R 1 . . H C3' -.4820(4) -.6825(4) -.17878(14) .0392(9) Uani d . 1 . . C H3 -.4540 -.6089 -.2020 .059 Uiso calc R 1 . . H C4' -.6409(5) -.6661(4) -.15912(15) .0379(9) Uani d . 1 . . C H4 -.6346 -.6251 -.1258 .057 Uiso calc R 1 . . H O4' -.7006(3) -.8011(3) -.15439(9) .0373(7) Uani d . 1 . . O C5' -.7432(5) -.5803(4) -.19017(14) .0417(10) Uani d . 1 . . C H5 -.8449 -.5739 -.1752 .063 Uiso calc R 1 . . H H6 -.7013 -.4883 -.1936 .063 Uiso calc R 1 . . H O2 -.3545(3) -.8892(3) -.18087(11) .0440(7) Uani d . 1 . . O C1 -.2650(5) -.7883(4) -.15631(16) .0453(10) Uani d . 1 . . C O3 -.3766(3) -.6952(3) -.13990(10) .0454(7) Uani d . 1 . . O C2 -.1880(5) -.8498(6) -.11333(18) .0622(13) Uani d . 1 . . C H7 -.1128 -.9152 -.1247 .093 Uiso calc R 1 . . H H8 -.2630 -.8955 -.0928 .093 Uiso calc R 1 . . H H9 -.1377 -.7793 -.0943 .093 Uiso calc R 1 . . H C3 -.1558(5) -.7230(5) -.19226(19) .0545(12) Uani d . 1 . . C H10 -.0810 -.7896 -.2029 .082 Uiso calc R 1 . . H H11 -.1041 -.6476 -.1763 .082 Uiso calc R 1 . . H H12 -.2120 -.6898 -.2207 .082 Uiso calc R 1 . . H O11 -.7515(3) -.6456(3) -.23720(9) .0403(7) Uani d . 1 . . O O12 -.9497(3) -.5140(3) -.25665(10) .0470(7) Uani d . 1 . . O C10 -.8659(4) -.6053(4) -.26637(14) .0387(9) Uani d . 1 . . C C11 -.8791(4) -.6907(4) -.31113(15) .0380(9) Uani d . 1 . . C C12 -1.0027(5) -.6691(5) -.34182(16) .0482(11) Uani d . 1 . . C H13 -1.0718 -.5988 -.3345 .072 Uiso calc R 1 . . H C13 -1.0260(5) -.7470(5) -.38204(17) .0510(11) Uani d . 1 . . C H14 -1.1100 -.7316 -.4030 .076 Uiso calc R 1 . . H C14 -.9246(5) -.8488(4) -.39157(15) .0442(10) Uani d . 1 . . C C15 -.8003(5) -.8719(4) -.36319(15) .0469(10) Uani d . 1 . . C H15 -.7304 -.9409 -.3715 .070 Uiso calc R 1 . . H C16 -.7779(5) -.7930(4) -.32216(15) .0428(10) Uani d . 1 . . C H16 -.6932 -.8087 -.3015 .064 Uiso calc R 1 . . H N11 -.9517(5) -.9355(4) -.43481(15) .0591(11) Uani d . 1 . . N O111 -.8537(5) -1.0111(4) -.44807(15) .0944(14) Uani d . 1 . . O O112 -1.0716(5) -.9275(5) -.45604(16) .0865(12) Uani d . 1 . . O N1 -.6159(4) -1.0186(3) -.16730(11) .0373(8) Uani d . 1 . . N N2 -.6226(4) -1.1245(4) -.19845(13) .0483(9) Uani d . 1 . . N N3 -.6018(4) -1.2321(4) -.17292(16) .0529(10) Uani d . 1 . . N C4 -.5828(5) -1.1970(4) -.12519(18) .0493(11) Uani d . 1 . . C C5 -.5904(4) -1.0568(4) -.12095(14) .0361(9) Uani d . 1 . . C C20 -.5770(5) -.9642(4) -.07831(14) .0386(9) Uani d . 1 . . C H17 -.5166 -.8846 -.0879 .058 Uiso calc R 1 . . H H18 -.5226 -1.0108 -.0516 .058 Uiso calc R 1 . . H C21 -.7284(5) -.9183(4) -.05990(13) .0394(10) Uani d . 1 . . C O21 -.8440(3) -.9786(3) -.06469(10) .0489(8) Uani d . 1 . . O O22 -.7165(4) -.8023(3) -.03613(10) .0545(8) Uani d . 1 . . O C22 -.8542(7) -.7580(6) -.0119(2) .0814(19) Uani d . 1 . . C H19 -.8351 -.6730 .0052 .122 Uiso calc R 1 . . H H20 -.8865 -.8265 .0117 .122 Uiso calc R 1 . . H H21 -.9339 -.7446 -.0363 .122 Uiso calc R 1 . . H C31 -.5648(7) -1.3016(6) -.0904(2) .0708(15) Uani d . 1 . . C O31 -.5500(5) -1.4199(3) -.0977(2) .0924(14) Uani d . 1 . . O O32 -.5689(8) -1.2559(4) -.04509(18) .119(2) Uani d . 1 . . O C32 -.5566(18) -1.3652(8) -.0091(3) .194(6) Uani d . 1 . . C H22 -.5566 -1.3272 .0240 .291 Uiso calc R 1 . . H H23 -.4622 -1.4148 -.0145 .291 Uiso calc R 1 . . H H24 -.6426 -1.4265 -.0128 .291 Uiso calc R 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 C1' .034(2) .046(2) .033(2) -.006(2) .0025(17) -.0025(18) C2' .035(2) .042(2) .0363(19) -.0078(19) .0037(17) -.0011(18) C3' .033(2) .041(2) .043(2) -.0055(19) .0012(18) -.0012(19) C4' .034(2) .036(2) .044(2) -.0064(18) .0032(18) -.0044(19) O4' .0333(14) .0381(15) .0405(14) -.0030(13) .0074(12) .0011(13) C5' .036(2) .043(2) .046(2) -.003(2) .0047(19) -.0060(19) O2 .0284(13) .0425(16) .0610(17) -.0063(13) .0026(13) .0015(15) C1 .032(2) .047(2) .057(2) -.003(2) .004(2) -.003(2) O3 .0318(14) .0539(17) .0505(16) -.0021(15) -.0034(13) -.0108(15) C2 .043(2) .073(3) .070(3) .006(3) -.006(2) .001(3) C3 .034(2) .049(3) .081(3) -.011(2) .009(2) -.005(2) O11 .0367(14) .0422(15) .0420(14) .0053(13) .0012(12) -.0004(13) O12 .0396(16) .0448(16) .0566(16) .0098(15) .0042(14) .0007(14) C10 .031(2) .037(2) .048(2) -.001(2) .0067(19) .0085(19) C11 .0276(19) .042(2) .045(2) .0009(18) .0039(17) .0087(19) C12 .033(2) .052(3) .059(2) .011(2) .001(2) -.004(2) C13 .036(2) .060(3) .057(3) .003(2) -.009(2) -.003(2) C14 .040(2) .046(2) .046(2) -.002(2) .0027(19) .000(2) C15 .047(2) .046(2) .048(2) .012(2) .001(2) .005(2) C16 .037(2) .047(2) .045(2) .005(2) .0008(19) .006(2) N11 .067(3) .055(2) .055(2) .006(2) -.004(2) -.001(2) O111 .104(3) .095(3) .084(3) .044(3) -.024(2) -.037(2) O112 .078(3) .093(3) .089(3) .005(3) -.029(2) -.021(2) N1 .0351(18) .0349(17) .0420(18) -.0102(15) .0050(15) -.0060(15) N2 .0409(19) .048(2) .056(2) -.0089(19) .0123(18) -.022(2) N3 .040(2) .042(2) .077(3) -.0011(17) .008(2) -.022(2) C4 .039(2) .037(2) .072(3) .004(2) .006(2) .000(2) C5 .029(2) .034(2) .045(2) -.0032(17) .0036(18) .0001(17) C20 .040(2) .039(2) .037(2) -.0070(19) -.0032(18) .0010(18) C21 .049(2) .039(2) .0308(19) .001(2) -.0069(18) -.0023(18) O21 .0463(17) .0527(18) .0478(16) -.0078(16) .0087(14) -.0090(15) O22 .069(2) .0442(17) .0509(17) .0097(17) -.0159(16) -.0172(14) C22 .080(4) .084(4) .081(4) .036(4) -.018(3) -.047(3) C31 .057(3) .064(4) .092(4) .008(3) -.007(3) .000(3) O31 .080(3) .0356(19) .161(4) .0039(19) -.006(3) .012(2) O32 .214(7) .048(2) .096(3) .018(3) -.034(4) .032(2) C32 .39(2) .087(5) .104(6) .012(10) -.081(9) .030(5) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag C1' O4' . 1.406(5) yes C1' N1 . 1.454(5) yes C1' C2' . 1.546(5) yes C2' O2 . 1.415(5) ? C2' C3' . 1.533(6) yes C3' O3 . 1.419(5) ? C3' C4' . 1.513(5) yes C4' O4' . 1.446(5) yes C4' C5' . 1.505(6) yes C5' O11 . 1.441(4) yes O2 C1 . 1.443(5) ? C1 O3 . 1.425(5) ? C1 C2 . 1.489(6) ? C1 C3 . 1.522(6) ? O11 C10 . 1.348(5) ? O12 C10 . 1.201(4) ? C10 C11 . 1.493(6) ? C11 C16 . 1.387(6) ? C11 C12 . 1.394(6) ? C12 C13 . 1.360(6) ? C13 C14 . 1.377(6) ? C14 C15 . 1.365(6) ? C14 N11 . 1.481(6) yes C15 C16 . 1.382(6) ? N11 O111 . 1.203(5) yes N11 O112 . 1.212(5) yes N1 C5 . 1.341(5) yes N1 N2 . 1.354(4) yes N2 N3 . 1.289(5) yes N3 C4 . 1.360(6) yes C4 C5 . 1.399(6) yes C4 C31 . 1.417(7) ? C5 C20 . 1.489(5) ? C20 C21 . 1.501(6) ? C21 O21 . 1.192(5) ? C21 O22 . 1.327(5) ? O22 C22 . 1.455(6) ? C31 O31 . 1.199(6) ? C31 O32 . 1.319(7) ? O32 C32 . 1.469(8) ? loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0033 .0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0106 .0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N .0061 .0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle O4' C1' N1 108.0(3) O4' C1' C2' 108.0(3) N1 C1' C2' 113.3(3) O2 C2' C3' 105.2(3) O2 C2' C1' 111.9(3) C3' C2' C1' 103.8(3) O3 C3' C4' 110.7(3) O3 C3' C2' 103.1(3) C4' C3' C2' 106.0(3) O4' C4' C5' 110.8(3) O4' C4' C3' 105.7(3) C5' C4' C3' 114.8(3) C1' O4' C4' 109.4(3) O11 C5' C4' 106.2(3) C2' O2 C1 106.9(3) O3 C1 O2 102.5(3) O3 C1 C2 109.6(4) O2 C1 C2 109.4(4) O3 C1 C3 111.5(4) O2 C1 C3 110.1(3) C2 C1 C3 113.2(4) C3' O3 C1 106.1(3) C10 O11 C5' 115.6(3) O12 C10 O11 123.8(4) O12 C10 C11 124.2(4) O11 C10 C11 112.0(3) C16 C11 C12 119.2(4) C16 C11 C10 122.9(4) C12 C11 C10 117.8(4) C13 C12 C11 121.2(4) C12 C13 C14 118.1(4) C15 C14 C13 122.8(4) C15 C14 N11 119.1(4) C13 C14 N11 118.1(4) C14 C15 C16 118.8(4) C15 C16 C11 119.9(4) O111 N11 O112 121.8(4) O111 N11 C14 119.1(4) O112 N11 C14 119.1(4) C5 N1 N2 112.4(3) C5 N1 C1' 131.0(3) N2 N1 C1' 116.5(3) N3 N2 N1 107.3(3) N2 N3 C4 108.9(3) N3 C4 C5 109.2(4) N3 C4 C31 118.0(4) C5 C4 C31 132.8(5) N1 C5 C4 102.2(4) N1 C5 C20 125.3(3) C4 C5 C20 132.5(4) C5 C20 C21 112.3(3) O21 C21 O22 123.9(4) O21 C21 C20 125.1(3) O22 C21 C20 110.9(4) C21 O22 C22 114.8(4) O31 C31 O32 119.7(6) O31 C31 C4 128.3(6) O32 C31 C4 112.0(5) C31 O32 C32 111.8(5) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag O4' C1' C2' O2 104.3(3) ? N1 C1' C2' O2 -15.2(4) ? O4' C1' C2' C3' -8.6(4) yes N1 C1' C2' C3' -128.2(3) ? O2 C2' C3' O3 -9.2(4) ? C1' C2' C3' O3 108.4(3) ? O2 C2' C3' C4' -125.6(3) ? C1' C2' C3' C4' -8.0(4) yes O3 C3' C4' O4' -89.7(4) ? C2' C3' C4' O4' 21.4(4) yes O3 C3' C4' C5' 147.9(3) ? C2' C3' C4' C5' -101.0(4) ? N1 C1' O4' C4' 145.9(3) ? C2' C1' O4' C4' 23.1(4) yes C5' C4' O4' C1' 96.9(3) ? C3' C4' O4' C1' -28.1(4) yes O4' C4' C5' O11 -59.6(4) yes C3' C4' C5' O11 60.1(4) yes C3' C2' O2 C1 -15.6(4) ? C1' C2' O2 C1 -127.6(3) ? C2' O2 C1 O3 34.6(4) ? C2' O2 C1 C2 150.8(3) ? C2' O2 C1 C3 -84.2(4) ? C4' C3' O3 C1 144.0(3) ? C2' C3' O3 C1 31.1(4) ? O2 C1 O3 C3' -41.1(4) ? C2 C1 O3 C3' -157.2(4) ? C3 C1 O3 C3' 76.7(4) ? C4' C5' O11 C10 163.8(3) ? C5' O11 C10 O12 5.9(5) ? C5' O11 C10 C11 -172.1(3) ? O12 C10 C11 C16 178.0(4) ? O11 C10 C11 C16 -4.1(5) ? O12 C10 C11 C12 -4.7(6) ? O11 C10 C11 C12 173.3(3) ? C16 C11 C12 C13 .5(6) ? C10 C11 C12 C13 -177.0(4) ? C11 C12 C13 C14 .4(7) ? C12 C13 C14 C15 -1.9(7) ? C12 C13 C14 N11 178.8(4) ? C13 C14 C15 C16 2.4(7) ? N11 C14 C15 C16 -178.3(4) ? C14 C15 C16 C11 -1.4(6) ? C12 C11 C16 C15 .0(6) ? C10 C11 C16 C15 177.3(4) ? C15 C14 N11 O111 -10.5(6) ? C13 C14 N11 O111 168.8(5) ? C15 C14 N11 O112 170.0(4) ? C13 C14 N11 O112 -10.7(6) ? O4' C1' N1 C5 -34.1(5) yes C2' C1' N1 C5 85.4(5) ? O4' C1' N1 N2 148.8(3) yes C2' C1' N1 N2 -91.7(4) ? C5 N1 N2 N3 .0(4) ? C1' N1 N2 N3 177.6(3) ? N1 N2 N3 C4 .5(5) ? N2 N3 C4 C5 -.9(5) ? N2 N3 C4 C31 177.3(4) ? N2 N1 C5 C4 -.5(5) ? C1' N1 C5 C4 -177.7(4) ? N2 N1 C5 C20 180.0(4) ? C1' N1 C5 C20 2.8(7) ? N3 C4 C5 N1 .8(5) ? C31 C4 C5 N1 -176.9(5) ? N3 C4 C5 C20 -179.7(4) ? C31 C4 C5 C20 2.5(9) ? N1 C5 C20 C21 79.4(5) ? C4 C5 C20 C21 -99.9(5) ? C5 C20 C21 O21 25.6(6) ? C5 C20 C21 O22 -156.1(3) ? O21 C21 O22 C22 5.4(6) ? C20 C21 O22 C22 -173.0(4) ? N3 C4 C31 O31 7.5(9) ? C5 C4 C31 O31 -174.9(6) ? N3 C4 C31 O32 -171.1(5) ? C5 C4 C31 O32 6.5(9) ? O31 C31 O32 C32 -1.1(11) ? C4 C31 O32 C32 177.6(8) ?