#------------------------------------------------------------------------------ #$Date: 2009-11-16 01:43:51 +0000 (Mon, 16 Nov 2009) $ #$Revision: 853 $ #$URL: svn://www.crystallography.net/cod/cif/2/2011227.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_2011227 _journal_name_full 'Acta Crystallographica, Section C' _journal_year 2000 _journal_volume 56 _journal_page_first 989 _journal_page_last 991 _publ_section_title ; 2'-Deoxy-5-methylisocytidine ; _space_group_IT_number 146 _symmetry_space_group_name_Hall 'R 3' _symmetry_space_group_name_H-M 'R 3 :H' _[local]_cod_cif_authors_sg_H-M 'R 3' loop_ _publ_author_name 'Seela, Frank' 'He, Yang' 'Reuter, Hans' 'Heithoff, Eva-Maria' _chemical_name_common 2'-Deoxy-5-methylisocytidine _chemical_formula_moiety 'C10 H15 N3 O4' _chemical_formula_sum 'C10 H15 N3 O4' _chemical_formula_weight 241.25 _symmetry_cell_setting trigonal loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-y, x-y, z' '-x+y, -x, z' 'x+2/3, y+1/3, z+1/3' '-y+2/3, x-y+1/3, z+1/3' '-x+y+2/3, -x+1/3, z+1/3' 'x+1/3, y+2/3, z+2/3' '-y+1/3, x-y+2/3, z+2/3' '-x+y+1/3, -x+2/3, z+2/3' _cell_length_a 16.611(3) _cell_length_b 16.611(3) _cell_length_c 10.6471(13) _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 120.00 _cell_volume 2544.4(7) _cell_formula_units_Z 9 _cell_measurement_temperature 293(2) _exptl_crystal_density_diffrn 1.417 _diffrn_ambient_temperature 293(2) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol N1 .1514(2) .5532(2) .7336(3) .0410(10) Uani d . 1 . . N C2 .0972(3) .5885(3) .7775(3) .0370(10) Uani d . 1 . . C N2 .0663(3) .6285(3) .6981(3) .0500(10) Uani d . 1 . . N H21 .033 .651 .731 .040(10) Uiso d R 1 . . H H22 .084 .636 .617 .060(10) Uiso d R 1 . . H N3 .0740(2) .5835(2) .8966(3) .0430(10) Uani d . 1 . . N C4 .1062(3) .5460(3) .9826(3) .0410(10) Uani d . 1 . . C O4 .0809(2) .5396(2) 1.0944(2) .0540(10) Uani d . 1 . . O C5 .1721(3) .5180(3) .9441(4) .0440(10) Uani d . 1 . . C C5A .2163(4) .4860(4) 1.0404(4) .0640(10) Uani d . 1 . . C H5A1 .256 .537 1.094 .097 Uiso calc R 1 . . H H5A2 .252 .464 .999 .097 Uiso calc R 1 . . H H5A3 .169 .437 1.090 .097 Uiso calc R 1 . . H C6 .1902(3) .5210(3) .8212(4) .0460(10) Uani d . 1 . . C H6 .230 .501 .794 .069 Uiso calc R 1 . . H C1' .1625(3) .5391(3) .5990(3) .0460(10) Uani d . 1 . . C H1' .207 .517 .591 .069 Uiso calc R 1 . . H C2' .0726(4) .4715(3) .5323(4) .069(2) Uani d . 1 . . C H2'1 .068 .412 .524 .104 Uiso calc R 1 . . H H2'2 .019 .464 .579 .104 Uiso calc R 1 . . H C3' .0770(3) .5125(3) .4056(4) .0520(10) Uani d . 1 . . C H3'1 .022 .519 .391 .076 Uiso calc R 1 . . H O3' .0824(3) .4539(3) .3140(3) .0800(10) Uani d . 1 . . O H3' .105 .491 .225 .11(2) Uiso d R 1 . . H C4' .1658(3) .6084(3) .4075(3) .0450(10) Uani d . 1 . . C H4' .213 .606 .355 .068 Uiso calc R 1 . . H O4' .1982(2) .6251(2) .5358(2) .0440(10) Uani d . 1 . . O C5' .1553(3) .6889(3) .3643(4) .0460(10) Uani d . 1 . . C H5'2 .215 .746 .365 .070 Uiso calc R 1 . . H H5'1 .131 .678 .279 .070 Uiso calc R 1 . . H O5' .0935(2) .6987(2) .4467(2) .0440(10) Uani d . 1 . . O H5' .093 .754 .429 .10(2) Uiso d R 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 .046(3) .054(2) .032(2) .032(2) .0000(10) .0000(10) C2 .038(2) .046(2) .032(2) .024(2) -.0030(10) -.003(2) N2 .063(2) .076(3) .032(2) .051(2) .008(2) .006(2) N3 .051(2) .059(2) .031(2) .037(2) .0000(10) -.0010(10) C4 .048(2) .050(2) .032(2) .029(2) -.005(2) -.004(2) O4 .069(2) .081(2) .0290(10) .052(2) .0030(10) .0030(10) C5 .046(2) .056(2) .037(2) .030(2) -.005(2) -.002(2) C5A .078(3) .093(4) .048(2) .062(3) -.008(2) .004(2) C6 .048(2) .056(2) .048(2) .037(2) .003(2) .004(2) C1' .061(2) .051(2) .036(2) .035(2) .011(2) .008(2) C2' .085(4) .049(3) .038(2) .006(2) .011(2) -.007(2) C3' .056(2) .043(2) .054(2) .025(2) -.008(2) -.007(2) O3' .136(4) .063(2) .041(2) .049(2) -.006(2) -.008(2) C4' .050(2) .058(2) .032(2) .030(2) .009(2) .004(2) O4' .03850(10) .048(2) .0430(10) .0180(10) -.0020(10) .0040(10) C5' .050(2) .047(2) .035(2) .018(2) .008(2) .008(2) O5' .051(2) .044(2) .0400(10) .0260(10) .0060(10) .0090(10) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag N1 C2 . 1.378(5) yes N1 C6 . 1.384(5) yes N1 C1' . 1.478(5) yes C2 N3 . 1.316(4) yes C2 N2 . 1.328(5) yes N2 H21 . .878 yes N2 H22 . .896 yes N3 C4 . 1.358(5) yes C4 O4 . 1.249(4) yes C4 C5 . 1.445(5) yes C5 C6 . 1.339(6) yes C5 C5A . 1.504(5) yes C5A H5A1 . .96 no C5A H5A2 . .96 no C5A H5A3 . .96 no C6 H6 . .93 no C1' O4' . 1.413(5) yes C1' C2' . 1.523(7) yes C1' H1' . .98 no C2' C3' . 1.496(6) yes C2' H2'1 . .97 no C2' H2'2 . .97 no C3' O3' . 1.412(5) yes C3' C4' . 1.539(6) yes C3' H3'1 . .98 no O3' H3' . 1.090 yes C4' O4' . 1.444(4) yes C4' C5' . 1.505(6) yes C4' H4' . .98 no C5' O5' . 1.420(5) yes C5' H5'2 . .97 no C5' H5'1 . .97 no O5' H5' . .946 yes