#------------------------------------------------------------------------------ #$Date: 2016-02-14 14:26:36 +0000 (Sun, 14 Feb 2016) $ #$Revision: 176435 $ #$URL: svn://www.crystallography.net/cod/cif/2/01/13/2011376.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2011376 loop_ _publ_author_name 'Sakamoto, Jun' 'Nakagawa, Takashi' 'Kanehisa, Nobuko' 'Kai, Yasushi' 'Katsura, Masahiro' _publ_section_title ; Methylmalonamide and ethylmalonamide ; _journal_issue 9 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first e411 _journal_page_last e412 _journal_paper_doi 10.1107/S0108270100010866 _journal_volume 56 _journal_year 2000 _chemical_formula_moiety 'C5 H10 N2 O2 ' _chemical_formula_sum 'C5 H10 N2 O2' _chemical_formula_weight 130.15 _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _cell_angle_alpha 90 _cell_angle_beta 96.690(10) _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 6.5700(10) _cell_length_b 9.5020(10) _cell_length_c 11.0320(10) _cell_measurement_reflns_used 25 _cell_measurement_temperature 296.2 _cell_measurement_theta_max 13.5 _cell_measurement_theta_min 12.8 _cell_volume 684.02(14) _computing_cell_refinement ; MSC/AFC Diffractometer Control Software ; _computing_data_collection ; MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1990) ; _computing_data_reduction ; TEXSAN (Molecular Structure Corporation & Rigaku Corporation, 1999) ; _computing_publication_material TEXSAN _computing_structure_refinement TEXSAN _computing_structure_solution 'SIR92 (Altomare et al., 1993)' _diffrn_measured_fraction_theta_full .9994 _diffrn_measured_fraction_theta_max .9994 _diffrn_measurement_device_type 'Rigaku AFC-5R' _diffrn_measurement_method \w-2\q _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength .7107 _diffrn_reflns_av_R_equivalents .029 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 14 _diffrn_reflns_limit_l_min -14 _diffrn_reflns_number 1830 _diffrn_reflns_theta_full 27.57 _diffrn_reflns_theta_max 27.57 _diffrn_standards_decay_% .50 _diffrn_standards_interval_count 150 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu .098 _exptl_absorpt_correction_T_max .998 _exptl_absorpt_correction_T_min .974 _exptl_absorpt_correction_type '\y scan' _exptl_absorpt_process_details '(North et al., 1968)' _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.264 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prismatic _exptl_crystal_size_max .20 _exptl_crystal_size_mid .20 _exptl_crystal_size_min .20 _refine_diff_density_max .60 _refine_diff_density_min -.27 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.131 _refine_ls_hydrogen_treatment refall _refine_ls_number_parameters 121 _refine_ls_number_reflns 1589 _refine_ls_R_factor_gt .0509 _refine_ls_shift/su_max .0033 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/(\s^2^(Fo^2^) + {0.048[Max(Fo^2^,0) + 2Fc^2^]/3}^2^)' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref .1203 _reflns_number_gt 1077 _reflns_number_total 1589 _reflns_threshold_expression I>2\s(I) _cod_data_source_file qd0020.cif _cod_data_source_block II _cod_original_cell_volume 684.1(2) _cod_original_sg_symbol_H-M 'P 21/n' _cod_original_formula_sum 'C5 H10 N2 O2 ' _cod_database_code 2011376 _cod_database_fobs_code 2011376 loop_ _symmetry_equiv_pos_as_xyz x,y,z 1/2-x,1/2+y,1/2-z -x,-y,-z 1/2+x,1/2-y,1/2+z loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol O(1) .1713(2) .07560(10) .40070(10) .0459(4) Uani d . 1.00 . . O O(2) .1758(2) .08010(10) .12230(10) .0392(4) Uani d . 1.00 . . O N(1) .1488(3) -.1502(2) .0806(2) .0404(5) Uani d . 1.00 . . N N(2) .1278(3) -.1549(2) .4256(2) .0448(5) Uani d . 1.00 . . N C(1) .3394(3) -.0800(2) .2716(2) .0313(5) Uani d . 1.00 . . C C(3) .2053(3) -.0466(2) .3723(2) .0315(5) Uani d . 1.00 . . C C(4) .5393(3) .0029(3) .2888(2) .0453(7) Uani d . 1.00 . . C C(5) .6802(4) -.0347(5) .1951(3) .0760(10) Uani d . 1.00 . . C C(6) .2145(3) -.0436(2) .1504(2) .0292(5) Uani d . 1.00 . . C H(1) .193(3) -.238(3) .098(2) .056(7) Uiso calc . 1.00 . . H H(2) .071(3) -.132(2) .015(2) .054(7) Uiso calc . 1.00 . . H H(3) .041(3) -.136(2) .481(2) .049(6) Uiso calc . 1.00 . . H H(4) .161(4) -.238(3) .406(2) .059(7) Uiso calc . 1.00 . . H H(5) .367(3) -.180(2) .273(2) .028(5) Uiso calc . 1.00 . . H H(6) .507(3) .104(2) .286(2) .047(6) Uiso calc . 1.00 . . H H(7) .602(4) -.022(2) .368(2) .062(7) Uiso calc . 1.00 . . H H(8) .705(5) -.136(4) .196(3) .120(10) Uiso calc . 1.00 . . H H(9) .614(5) -.021(3) .109(3) .095(9) Uiso calc . 1.00 . . H H(10) .799(5) .021(3) .208(3) .082(8) Uiso calc . 1.00 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O(1) .0621(9) .0284(7) .0524(9) -.0017(7) .0285(7) -.0042(7) O(2) .0446(8) .0263(7) .0451(8) -.0002(6) -.0009(6) .0039(6) N(1) .0500(10) .0300(9) .0389(10) .0035(8) -.0029(8) -.0022(8) N(2) .0620(10) .0296(10) .0480(10) .0005(9) .0279(10) -.0001(8) C(1) .0341(10) .0284(9) .0323(10) .0040(8) .0082(7) .0010(8) C(3) .0347(10) .0294(10) .0308(10) .0006(8) .0057(8) .0000(8) C(4) .0320(10) .064(2) .0410(10) -.0020(10) .0041(9) .0010(10) C(5) .0370(10) .120(3) .076(2) -.005(2) .0230(10) -.006(2) C(6) .0268(8) .0294(10) .0332(10) .0004(8) .0111(7) .0019(8) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .003 .002 ;International Tables for Crystallography (1992, Vol. C, Tables 4.2.6.8 and 6.1.1.1) ; H H .000 .000 ;International Tables for Crystallography (1992, Vol. C, Table 6.1.1.2) ; N N .006 .003 ;International Tables for Crystallography (1992, Vol. C, Tables 4.2.6.8 and 6.1.1.1) ; O O .011 .006 ;International Tables for Crystallography (1992, Vol. C, Tables 4.2.6.8 and 6.1.1.1) ; loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_2 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag C(6) N(1) H(1) 1_555 1_555 121.0(10) no C(6) N(1) H(2) 1_555 1_555 117.0(10) no H(1) N(1) H(2) 1_555 1_555 120(2) no C(3) N(2) H(3) 1_555 1_555 117.0(10) no C(3) N(2) H(4) 1_555 1_555 119.0(10) no H(3) N(2) H(4) 1_555 1_555 123(2) no C(3) C(1) C(4) 1_555 1_555 111.3(2) no C(3) C(1) C(6) 1_555 1_555 107.10(10) no C(3) C(1) H(5) 1_555 1_555 108.0(10) no C(4) C(1) C(6) 1_555 1_555 111.1(2) no C(4) C(1) H(5) 1_555 1_555 110.0(10) no C(6) C(1) H(5) 1_555 1_555 108.0(10) no O(1) C(3) N(2) 1_555 1_555 122.2(2) no O(1) C(3) C(1) 1_555 1_555 121.2(2) no N(2) C(3) C(1) 1_555 1_555 116.6(2) no C(1) C(4) C(5) 1_555 1_555 112.5(2) no C(1) C(4) H(6) 1_555 1_555 109.0(10) no C(1) C(4) H(7) 1_555 1_555 105.0(10) no C(5) C(4) H(6) 1_555 1_555 111.0(10) no C(5) C(4) H(7) 1_555 1_555 110(2) no H(6) C(4) H(7) 1_555 1_555 110.0(10) no C(4) C(5) H(8) 1_555 1_555 112(2) no C(4) C(5) H(9) 1_555 1_555 113.0(10) no C(4) C(5) H(10) 1_555 1_555 109.0(10) no H(8) C(5) H(9) 1_555 1_555 98(2) no H(8) C(5) H(10) 1_555 1_555 113(2) no H(9) C(5) H(10) 1_555 1_555 109(2) no O(2) C(6) N(1) 1_555 1_555 122.9(2) no O(2) C(6) C(1) 1_555 1_555 120.7(2) no N(1) C(6) C(1) 1_555 1_555 116.5(2) no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_1 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag O(1) C(3) . . 1.230(2) no O(2) C(6) . . 1.235(2) no N(1) C(6) . . 1.314(3) no N(1) H(1) . . .90(3) no N(1) H(2) . . .85(3) no N(2) C(3) . . 1.317(3) no N(2) H(3) . . .91(2) no N(2) H(4) . . .86(3) no C(1) C(3) . . 1.530(3) no C(1) C(4) . . 1.524(3) no C(1) C(6) . . 1.525(3) no C(1) H(5) . . .96(2) no C(4) C(5) . . 1.508(4) no C(4) H(6) . . .98(2) no C(4) H(7) . . .95(3) no C(5) H(8) . . .98(4) no C(5) H(9) . . 1.00(3) no C(5) H(10) . . .96(3) no loop_ _geom_contact_atom_site_label_1 _geom_contact_atom_site_label_2 _geom_contact_distance _geom_contact_site_symmetry_2 O(1) H(7) 2.85(3) 3_656 O(1) N(1) 2.858(2) 2_555 O(1) N(2) 2.996(2) 3_556 O(1) H(5) 3.00(2) 2_555 O(1) H(10) 3.07(3) 1_455 O(1) H(2) 3.33(3) 2_555 O(1) H(4) 3.58(3) 3_556 O(2) H(5) 2.59(2) 2_555 O(2) H(10) 2.79(3) 1_455 O(2) N(2) 2.906(2) 2_555 O(2) N(1) 2.982(3) 3_555 O(2) H(9) 3.07(3) 3_655 O(2) C(1) 3.441(2) 2_555 O(2) H(3) 3.54(2) 2_555 O(2) H(1) 3.55(3) 2_555 O(2) H(1) 3.56(3) 3_555 N(1) H(6) 3.02(2) 2_545 N(1) H(2) 3.17(3) 3_555 N(1) H(9) 3.19(3) 3_655 N(1) H(10) 3.26(3) 1_455 N(1) H(8) 3.32(3) 1_455 N(1) H(10) 3.47(3) 3_655 N(1) H(3) 3.55(2) 4_544 N(2) H(3) 3.19(2) 3_556 N(2) H(7) 3.20(3) 3_656 N(2) H(6) 3.31(2) 2_545 N(2) H(10) 3.45(3) 1_455 N(2) H(8) 3.54(4) 4_445 N(2) H(8) 3.55(4) 1_455 N(2) H(2) 3.59(2) 4_545 C(1) H(1) 3.56(3) 2_555 C(3) H(3) 2.97(2) 3_556 C(3) H(1) 3.01(3) 2_555 C(3) H(7) 3.07(3) 3_656 C(3) H(10) 3.09(3) 1_455 C(4) H(1) 3.22(2) 2_555 C(4) H(4) 3.42(3) 2_555 C(5) H(2) 3.38(2) 3_655 C(5) H(2) 3.55(2) 1_655 C(6) H(10) 2.92(3) 1_455 C(6) H(2) 2.97(3) 3_555 C(6) H(4) 3.09(3) 2_555 C(6) H(9) 3.24(3) 3_655 C(6) H(8) 3.52(3) 1_455 H(1) H(3) 3.00(3) 4_544 H(1) H(7) 3.37(3) 2_545 H(1) H(7) 3.41(4) 4_444 H(1) H(8) 3.59(4) 1_455 H(2) H(2) 2.69(5) 3_555 H(2) H(10) 2.89(4) 3_655 H(2) H(9) 2.98(4) 3_655 H(2) H(4) 3.07(3) 4_444 H(2) H(8) 3.30(4) 1_455 H(2) H(10) 3.28(4) 1_455 H(2) H(5) 3.36(3) 4_444 H(2) H(6) 3.42(3) 2_545 H(2) H(9) 3.43(4) 1_455 H(3) H(3) 2.68(5) 3_556 H(3) H(7) 3.10(3) 3_656 H(3) H(7) 3.19(3) 1_455 H(3) H(8) 3.27(4) 4_445 H(3) H(9) 3.54(4) 4_445 H(3) H(10) 3.56(4) 1_455 H(4) H(6) 2.72(3) 2_545 H(4) H(9) 3.22(4) 4_445 H(4) H(9) 3.25(4) 2_545 H(4) H(8) 3.36(4) 4_445 H(5) H(6) 3.22(3) 2_545 H(5) H(10) 3.56(4) 2_645 H(6) H(8) 3.09(5) 2_655 H(7) H(7) 3.39(5) 3_656 H(8) H(10) 3.43(5) 2_645 H(9) H(9) 2.72(7) 3_655 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N2 H4 O2 2_545 .85(3) 2.08(3) 2.906(2) 164(2) yes N2 H3 O1 3_556 .90(2) 2.10(2) 2.996(2) 174.5(18) yes N1 H1 O1 2_545 .90(3) 1.98(3) 2.859(2) 165(2) yes N1 H2 O2 3_555 .85(2) 2.14(2) 2.982(2) 167.1(19) yes C1 H5 O2 2_545 .967(19) 2.59(2) 3.441(2) 147.5(17) yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion _geom_torsion_publ_flag O(1) C(3) C(1) C(4) 1_555 1_555 1_555 1_555 48.4(2) no O(1) C(3) C(1) C(6) 1_555 1_555 1_555 1_555 -73.1(2) no O(2) C(6) C(1) C(3) 1_555 1_555 1_555 1_555 69.7(2) no O(2) C(6) C(1) C(4) 1_555 1_555 1_555 1_555 -52.0(2) no N(1) C(6) C(1) C(3) 1_555 1_555 1_555 1_555 -108.9(2) no N(1) C(6) C(1) C(4) 1_555 1_555 1_555 1_555 129.4(2) no N(2) C(3) C(1) C(4) 1_555 1_555 1_555 1_555 -132.1(2) no N(2) C(3) C(1) C(6) 1_555 1_555 1_555 1_555 106.4(2) no C(3) C(1) C(4) C(5) 1_555 1_555 1_555 1_555 176.5(2) no C(5) C(4) C(1) C(6) 1_555 1_555 1_555 1_555 -64.3(3) no