#------------------------------------------------------------------------------ #$Date: 2011-09-10 04:16:28 +0100 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2011376.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2011376 loop_ _publ_author_name 'Sakamoto, Jun' 'Nakagawa, Takashi' 'Kanehisa, Nobuko' 'Kai, Yasushi' 'Katsura, Masahiro' _publ_section_title ; Methylmalonamide and ethylmalonamide ; _journal_issue 9 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first e411 _journal_page_last e412 _journal_volume 56 _journal_year 2000 _chemical_formula_moiety 'C5 H10 N2 O2 ' _chemical_formula_sum 'C5 H10 N2 O2' _chemical_formula_weight 130.15 _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _cell_angle_alpha 90 _cell_angle_beta 96.690(10) _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 6.5700(10) _cell_length_b 9.5020(10) _cell_length_c 11.0320(10) _cell_measurement_reflns_used 25 _cell_measurement_temperature 296.2 _cell_measurement_theta_max 13.5 _cell_measurement_theta_min 12.8 _cell_volume 684.02(14) _computing_cell_refinement ; MSC/AFC Diffractometer Control Software ; _computing_data_collection ; MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1990) ; _computing_data_reduction ; TEXSAN (Molecular Structure Corporation & Rigaku Corporation, 1999) ; _computing_publication_material TEXSAN _computing_structure_refinement TEXSAN _computing_structure_solution 'SIR92 (Altomare et al., 1993)' _diffrn_measured_fraction_theta_full .9994 _diffrn_measured_fraction_theta_max .9994 _diffrn_measurement_device_type 'Rigaku AFC-5R' _diffrn_measurement_method \w-2\q _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength .7107 _diffrn_reflns_av_R_equivalents .029 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 14 _diffrn_reflns_limit_l_min -14 _diffrn_reflns_number 1830 _diffrn_reflns_theta_full 27.57 _diffrn_reflns_theta_max 27.57 _diffrn_standards_decay_% .50 _diffrn_standards_interval_count 150 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu .098 _exptl_absorpt_correction_T_max .998 _exptl_absorpt_correction_T_min .974 _exptl_absorpt_correction_type '\y scan' _exptl_absorpt_process_details '(North et al., 1968)' _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.264 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prismatic _exptl_crystal_size_max .20 _exptl_crystal_size_mid .20 _exptl_crystal_size_min .20 _refine_diff_density_max .60 _refine_diff_density_min -.27 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.131 _refine_ls_hydrogen_treatment refall _refine_ls_number_parameters 121 _refine_ls_number_reflns 1589 _refine_ls_R_factor_gt .0509 _refine_ls_shift/su_max .0033 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/(\s^2^(Fo^2^) + {0.048[Max(Fo^2^,0) + 2Fc^2^]/3}^2^)' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref .1203 _reflns_number_gt 1077 _reflns_number_total 1589 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file qd0020.cif _[local]_cod_data_source_block II _[local]_cod_cif_authors_sg_H-M 'P 21/n' _[local]_cod_chemical_formula_sum_orig 'C5 H10 N2 O2 ' _cod_original_cell_volume 684.1(2) _cod_database_code 2011376 loop_ _symmetry_equiv_pos_as_xyz x,y,z 1/2-x,1/2+y,1/2-z -x,-y,-z 1/2+x,1/2-y,1/2+z loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_occupancy _atom_site_type_symbol O(1) .1713(2) .07560(10) .40070(10) .0459(4) Uani d 1.00 O O(2) .1758(2) .08010(10) .12230(10) .0392(4) Uani d 1.00 O N(1) .1488(3) -.1502(2) .0806(2) .0404(5) Uani d 1.00 N N(2) .1278(3) -.1549(2) .4256(2) .0448(5) Uani d 1.00 N C(1) .3394(3) -.0800(2) .2716(2) .0313(5) Uani d 1.00 C C(3) .2053(3) -.0466(2) .3723(2) .0315(5) Uani d 1.00 C C(4) .5393(3) .0029(3) .2888(2) .0453(7) Uani d 1.00 C C(5) .6802(4) -.0347(5) .1951(3) .0760(10) Uani d 1.00 C C(6) .2145(3) -.0436(2) .1504(2) .0292(5) Uani d 1.00 C H(1) .193(3) -.238(3) .098(2) .056(7) Uiso calc 1.00 H H(2) .071(3) -.132(2) .015(2) .054(7) Uiso calc 1.00 H H(3) .041(3) -.136(2) .481(2) .049(6) Uiso calc 1.00 H H(4) .161(4) -.238(3) .406(2) .059(7) Uiso calc 1.00 H H(5) .367(3) -.180(2) .273(2) .028(5) Uiso calc 1.00 H H(6) .507(3) .104(2) .286(2) .047(6) Uiso calc 1.00 H H(7) .602(4) -.022(2) .368(2) .062(7) Uiso calc 1.00 H H(8) .705(5) -.136(4) .196(3) .120(10) Uiso calc 1.00 H H(9) .614(5) -.021(3) .109(3) .095(9) Uiso calc 1.00 H H(10) .799(5) .021(3) .208(3) .082(8) Uiso calc 1.00 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O(1) .0621(9) .0284(7) .0524(9) -.0017(7) .0285(7) -.0042(7) O(2) .0446(8) .0263(7) .0451(8) -.0002(6) -.0009(6) .0039(6) N(1) .0500(10) .0300(9) .0389(10) .0035(8) -.0029(8) -.0022(8) N(2) .0620(10) .0296(10) .0480(10) .0005(9) .0279(10) -.0001(8) C(1) .0341(10) .0284(9) .0323(10) .0040(8) .0082(7) .0010(8) C(3) .0347(10) .0294(10) .0308(10) .0006(8) .0057(8) .0000(8) C(4) .0320(10) .064(2) .0410(10) -.0020(10) .0041(9) .0010(10) C(5) .0370(10) .120(3) .076(2) -.005(2) .0230(10) -.006(2) C(6) .0268(8) .0294(10) .0332(10) .0004(8) .0111(7) .0019(8) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .003 .002 ;International Tables for Crystallography (1992, Vol. C, Tables 4.2.6.8 and 6.1.1.1) ; H H .000 .000 ;International Tables for Crystallography (1992, Vol. C, Table 6.1.1.2) ; N N .006 .003 ;International Tables for Crystallography (1992, Vol. C, Tables 4.2.6.8 and 6.1.1.1) ; O O .011 .006 ;International Tables for Crystallography (1992, Vol. C, Tables 4.2.6.8 and 6.1.1.1) ; loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_2 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag C(6) N(1) H(1) 1_555 1_555 121.0(10) no C(6) N(1) H(2) 1_555 1_555 117.0(10) no H(1) N(1) H(2) 1_555 1_555 120(2) no C(3) N(2) H(3) 1_555 1_555 117.0(10) no C(3) N(2) H(4) 1_555 1_555 119.0(10) no H(3) N(2) H(4) 1_555 1_555 123(2) no C(3) C(1) C(4) 1_555 1_555 111.3(2) no C(3) C(1) C(6) 1_555 1_555 107.10(10) no C(3) C(1) H(5) 1_555 1_555 108.0(10) no C(4) C(1) C(6) 1_555 1_555 111.1(2) no C(4) C(1) H(5) 1_555 1_555 110.0(10) no C(6) C(1) H(5) 1_555 1_555 108.0(10) no O(1) C(3) N(2) 1_555 1_555 122.2(2) no O(1) C(3) C(1) 1_555 1_555 121.2(2) no N(2) C(3) C(1) 1_555 1_555 116.6(2) no C(1) C(4) C(5) 1_555 1_555 112.5(2) no C(1) C(4) H(6) 1_555 1_555 109.0(10) no C(1) C(4) H(7) 1_555 1_555 105.0(10) no C(5) C(4) H(6) 1_555 1_555 111.0(10) no C(5) C(4) H(7) 1_555 1_555 110(2) no H(6) C(4) H(7) 1_555 1_555 110.0(10) no C(4) C(5) H(8) 1_555 1_555 112(2) no C(4) C(5) H(9) 1_555 1_555 113.0(10) no C(4) C(5) H(10) 1_555 1_555 109.0(10) no H(8) C(5) H(9) 1_555 1_555 98(2) no H(8) C(5) H(10) 1_555 1_555 113(2) no H(9) C(5) H(10) 1_555 1_555 109(2) no O(2) C(6) N(1) 1_555 1_555 122.9(2) no O(2) C(6) C(1) 1_555 1_555 120.7(2) no N(1) C(6) C(1) 1_555 1_555 116.5(2) no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag O(1) C(3) 1.230(2) no O(2) C(6) 1.235(2) no N(1) C(6) 1.314(3) no N(1) H(1) .90(3) no N(1) H(2) .85(3) no N(2) C(3) 1.317(3) no N(2) H(3) .91(2) no N(2) H(4) .86(3) no C(1) C(3) 1.530(3) no C(1) C(4) 1.524(3) no C(1) C(6) 1.525(3) no C(1) H(5) .96(2) no C(4) C(5) 1.508(4) no C(4) H(6) .98(2) no C(4) H(7) .95(3) no C(5) H(8) .98(4) no C(5) H(9) 1.00(3) no C(5) H(10) .96(3) no loop_ _geom_contact_atom_site_label_1 _geom_contact_atom_site_label_2 _geom_contact_distance _geom_contact_site_symmetry_2 O(1) H(7) 2.85(3) 3_656 O(1) N(1) 2.858(2) 2_555 O(1) N(2) 2.996(2) 3_556 O(1) H(5) 3.00(2) 2_555 O(1) H(10) 3.07(3) 1_455 O(1) H(2) 3.33(3) 2_555 O(1) H(4) 3.58(3) 3_556 O(2) H(5) 2.59(2) 2_555 O(2) H(10) 2.79(3) 1_455 O(2) N(2) 2.906(2) 2_555 O(2) N(1) 2.982(3) 3_555 O(2) H(9) 3.07(3) 3_655 O(2) C(1) 3.441(2) 2_555 O(2) H(3) 3.54(2) 2_555 O(2) H(1) 3.55(3) 2_555 O(2) H(1) 3.56(3) 3_555 N(1) H(6) 3.02(2) 2_545 N(1) H(2) 3.17(3) 3_555 N(1) H(9) 3.19(3) 3_655 N(1) H(10) 3.26(3) 1_455 N(1) H(8) 3.32(3) 1_455 N(1) H(10) 3.47(3) 3_655 N(1) H(3) 3.55(2) 4_544 N(2) H(3) 3.19(2) 3_556 N(2) H(7) 3.20(3) 3_656 N(2) H(6) 3.31(2) 2_545 N(2) H(10) 3.45(3) 1_455 N(2) H(8) 3.54(4) 4_445 N(2) H(8) 3.55(4) 1_455 N(2) H(2) 3.59(2) 4_545 C(1) H(1) 3.56(3) 2_555 C(3) H(3) 2.97(2) 3_556 C(3) H(1) 3.01(3) 2_555 C(3) H(7) 3.07(3) 3_656 C(3) H(10) 3.09(3) 1_455 C(4) H(1) 3.22(2) 2_555 C(4) H(4) 3.42(3) 2_555 C(5) H(2) 3.38(2) 3_655 C(5) H(2) 3.55(2) 1_655 C(6) H(10) 2.92(3) 1_455 C(6) H(2) 2.97(3) 3_555 C(6) H(4) 3.09(3) 2_555 C(6) H(9) 3.24(3) 3_655 C(6) H(8) 3.52(3) 1_455 H(1) H(3) 3.00(3) 4_544 H(1) H(7) 3.37(3) 2_545 H(1) H(7) 3.41(4) 4_444 H(1) H(8) 3.59(4) 1_455 H(2) H(2) 2.69(5) 3_555 H(2) H(10) 2.89(4) 3_655 H(2) H(9) 2.98(4) 3_655 H(2) H(4) 3.07(3) 4_444 H(2) H(8) 3.30(4) 1_455 H(2) H(10) 3.28(4) 1_455 H(2) H(5) 3.36(3) 4_444 H(2) H(6) 3.42(3) 2_545 H(2) H(9) 3.43(4) 1_455 H(3) H(3) 2.68(5) 3_556 H(3) H(7) 3.10(3) 3_656 H(3) H(7) 3.19(3) 1_455 H(3) H(8) 3.27(4) 4_445 H(3) H(9) 3.54(4) 4_445 H(3) H(10) 3.56(4) 1_455 H(4) H(6) 2.72(3) 2_545 H(4) H(9) 3.22(4) 4_445 H(4) H(9) 3.25(4) 2_545 H(4) H(8) 3.36(4) 4_445 H(5) H(6) 3.22(3) 2_545 H(5) H(10) 3.56(4) 2_645 H(6) H(8) 3.09(5) 2_655 H(7) H(7) 3.39(5) 3_656 H(8) H(10) 3.43(5) 2_645 H(9) H(9) 2.72(7) 3_655 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N2 H4 O2 2_545 .85(3) 2.08(3) 2.906(2) 164(2) yes N2 H3 O1 3_556 .90(2) 2.10(2) 2.996(2) 174.5(18) yes N1 H1 O1 2_545 .90(3) 1.98(3) 2.859(2) 165(2) yes N1 H2 O2 3_555 .85(2) 2.14(2) 2.982(2) 167.1(19) yes C1 H5 O2 2_545 .967(19) 2.59(2) 3.441(2) 147.5(17) yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion _geom_torsion_publ_flag O(1) C(3) C(1) C(4) 1_555 1_555 1_555 1_555 48.4(2) no O(1) C(3) C(1) C(6) 1_555 1_555 1_555 1_555 -73.1(2) no O(2) C(6) C(1) C(3) 1_555 1_555 1_555 1_555 69.7(2) no O(2) C(6) C(1) C(4) 1_555 1_555 1_555 1_555 -52.0(2) no N(1) C(6) C(1) C(3) 1_555 1_555 1_555 1_555 -108.9(2) no N(1) C(6) C(1) C(4) 1_555 1_555 1_555 1_555 129.4(2) no N(2) C(3) C(1) C(4) 1_555 1_555 1_555 1_555 -132.1(2) no N(2) C(3) C(1) C(6) 1_555 1_555 1_555 1_555 106.4(2) no C(3) C(1) C(4) C(5) 1_555 1_555 1_555 1_555 176.5(2) no C(5) C(4) C(1) C(6) 1_555 1_555 1_555 1_555 -64.3(3) no