#------------------------------------------------------------------------------ #$Date: 2011-09-10 04:16:28 +0100 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2011424.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2011424 loop_ _publ_author_name 'Michaux, Catherine' 'Norberg, Bernadette' 'Dogn\'e, Jean-Michel' 'Durant, Fran\,cois' 'Masereel, Bernard' 'Delarge, Jacques' 'Wouters, Johan' _publ_section_title ; Terbogrel, a dual-acting agent for thromboxane receptor antagonism and thromboxane synthase inhibition ; _journal_issue 10 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1265 _journal_page_last 1266 _journal_volume 56 _journal_year 2000 _chemical_formula_sum 'C23 H27 N5 O2' _chemical_formula_weight 405.50 _chemical_name_common terbogrel _chemical_name_systematic ; E-6-[4-(3-tert-butyl-2-cyanoguanidino)phenyl]-6-(3-pyridyl)hex-5-enoic acid ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _audit_creation_method SHELXL97 _cell_angle_alpha 90.00 _cell_angle_beta 113.049(5) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 14.9340(10) _cell_length_b 10.1150(10) _cell_length_c 15.7400(10) _cell_measurement_reflns_used 25 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 40 _cell_measurement_theta_min 30 _cell_volume 2187.8(3) _computing_cell_refinement 'CAD-4 Software' _computing_data_collection 'CAD-4 Software (Enraf-Nonius, 1989)' _computing_data_reduction 'HELENA (Spek, 1997)' _computing_molecular_graphics 'PLATON (Spek, 1990)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SIR97 (Altomare et al., 1998)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full .932 _diffrn_measured_fraction_theta_max .932 _diffrn_measurement_device_type 'Enraf-Nonius CAD4' _diffrn_measurement_method \q/2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'long fine-focus sealed tube' _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.54178 _diffrn_reflns_av_R_equivalents .013 _diffrn_reflns_av_sigmaI/netI .019 _diffrn_reflns_limit_h_max 15 _diffrn_reflns_limit_h_min -18 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min -8 _diffrn_reflns_limit_l_max 19 _diffrn_reflns_limit_l_min 0 _diffrn_reflns_number 5986 _diffrn_reflns_theta_full 71.88 _diffrn_reflns_theta_max 71.88 _diffrn_reflns_theta_min 3.22 _diffrn_standards_decay_% 6 _diffrn_standards_interval_count 200 _diffrn_standards_interval_time 60 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu .651 _exptl_absorpt_correction_T_max .913 _exptl_absorpt_correction_T_min .813 _exptl_absorpt_correction_type '\y scan' _exptl_absorpt_process_details '(North et al., 1968)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.231 _exptl_crystal_density_method 'not measured' _exptl_crystal_description polyhedral _exptl_crystal_F_000 864 _exptl_crystal_size_max .48 _exptl_crystal_size_mid .35 _exptl_crystal_size_min .14 _refine_diff_density_max .198 _refine_diff_density_min -.182 _refine_ls_extinction_coef .0021(2) _refine_ls_extinction_method 'SHELXL97 (Sheldrick, 1997)' _refine_ls_goodness_of_fit_ref 1.047 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 288 _refine_ls_number_reflns 4252 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.047 _refine_ls_R_factor_all .047 _refine_ls_R_factor_gt .036 _refine_ls_shift/su_max .001 _refine_ls_shift/su_mean .000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.0492P)^2^+0.4729P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref .105 _reflns_number_gt 3571 _reflns_number_total 4252 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file gs1099.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'P 21/c' _cod_database_code 2011424 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol C1 1.08328(15) .0187(2) .88663(13) .0763(6) Uani d . 1 C H1A 1.0424 -.0566 .8819 .114 Uiso calc R 1 H H1B 1.1264 .0312 .9499 .114 Uiso calc R 1 H H1C 1.1207 .0042 .8499 .114 Uiso calc R 1 H C2 1.08166(13) .26184(19) .85382(13) .0662(5) Uani d . 1 C H2A 1.1160 .2471 .8144 .099 Uiso calc R 1 H H2B 1.1275 .2773 .9158 .099 Uiso calc R 1 H H2C 1.0400 .3375 .8324 .099 Uiso calc R 1 H C3 .96335(13) .1680(2) .91192(11) .0662(5) Uani d . 1 C H3A .9213 .2426 .8877 .099 Uiso calc R 1 H H3B 1.0077 .1866 .9740 .099 Uiso calc R 1 H H3C .9249 .0918 .9118 .099 Uiso calc R 1 H C4 1.02051(10) .14085(15) .85219(9) .0442(3) Uani d . 1 C N5 .94693(8) .12065(12) .75740(7) .0399(3) Uani d . 1 N H5 .8880(12) .1047(15) .7519(11) .049(4) Uiso d . 1 H C6 .96475(9) .10485(13) .68113(9) .0366(3) Uani d . 1 C N7 1.05604(8) .09022(13) .69011(8) .0465(3) Uani d . 1 N C8 1.07929(9) .07551(16) .61872(10) .0458(3) Uani d . 1 C N9 1.11025(10) .05886(18) .56317(10) .0680(4) Uani d . 1 N N10 .88886(8) .10299(12) .59729(8) .0405(3) Uani d . 1 N H10 .9001(11) .0617(16) .5535(12) .053(4) Uiso d . 1 H C11 .78889(9) .12373(12) .57780(8) .0336(3) Uani d . 1 C C12 .72172(9) .04607(13) .50961(9) .0388(3) Uani d . 1 C H12 .7430 -.0177 .4792 .047 Uiso calc R 1 H C13 .62338(10) .06382(14) .48710(9) .0431(3) Uani d . 1 C H13 .5786 .0133 .4403 .052 Uiso calc R 1 H C14 .59069(9) .15601(14) .53340(9) .0394(3) Uani d . 1 C H14 .5244 .1653 .5189 .047 Uiso calc R 1 H C15 .65697(9) .23481(12) .60165(8) .0333(3) Uani d . 1 C C16 .75602(9) .22091(12) .62122(8) .0348(3) Uani d . 1 C H16 .8005 .2772 .6637 .042 Uiso calc R 1 H C17 .62346(9) .33251(12) .65423(9) .0356(3) Uani d . 1 C C18 .64529(9) .47432(12) .64555(9) .0358(3) Uani d . 1 C C19 .63575(10) .52835(14) .56121(10) .0451(3) Uani d . 1 C H19 .6190 .4746 .5093 .054 Uiso calc R 1 H C20 .65116(12) .66165(15) .55459(11) .0528(4) Uani d . 1 C H20 .6456 .6986 .4986 .063 Uiso calc R 1 H C21 .67480(11) .73887(15) .63193(11) .0515(4) Uani d . 1 C H21 .6837 .8291 .6269 .062 Uiso calc R 1 H N22 .68555(9) .68985(12) .71417(9) .0483(3) Uani d . 1 N C23 .67238(10) .56039(13) .72015(10) .0419(3) Uani d . 1 C H23 .6819 .5256 .7777 .050 Uiso calc R 1 H C24 .57394(10) .29827(14) .70536(10) .0413(3) Uani d . 1 C H24 .5541(11) .3688(15) .7359(11) .048(4) Uiso d . 1 H C25 .54620(10) .16305(14) .72486(10) .0432(3) Uani d . 1 C H25A .5679 .0983 .6916 .052 Uiso calc R 1 H H25B .4759 .1572 .7025 .052 Uiso calc R 1 H C26 .59052(11) .13039(14) .82789(10) .0456(3) Uani d . 1 C H26A .5778 .2027 .8621 .055 Uiso calc R 1 H H26B .5593 .0519 .8389 .055 Uiso calc R 1 H C27 .70013(11) .10697(14) .86361(10) .0489(3) Uani d . 1 C H27A .7313 .1847 .8515 .059 Uiso calc R 1 H H27B .7256 .0936 .9299 .059 Uiso calc R 1 H C28 .72410(10) -.01093(14) .81872(10) .0460(3) Uani d . 1 C O29 .76994(9) -.00641(12) .77071(9) .0641(3) Uani d . 1 O O30 .68680(10) -.12204(11) .83429(10) .0681(4) Uani d . 1 O H30 .698(2) -.196(3) .7966(19) .127(9) Uiso d . 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 C1 .0775(12) .0887(14) .0561(10) .0253(11) .0191(9) .0199(10) C2 .0621(10) .0753(12) .0648(11) -.0232(9) .0286(9) -.0221(9) C3 .0587(9) .1049(14) .0416(8) -.0106(10) .0268(7) -.0181(9) C4 .0399(7) .0580(8) .0352(7) -.0012(6) .0152(6) -.0050(6) N5 .0321(6) .0566(7) .0349(6) -.0010(5) .0172(5) -.0047(5) C6 .0343(6) .0419(7) .0372(6) .0017(5) .0178(5) -.0030(5) N7 .0339(6) .0701(8) .0398(6) .0033(5) .0191(5) -.0058(6) C8 .0324(6) .0650(9) .0422(7) .0033(6) .0169(6) -.0052(7) N9 .0510(8) .1096(12) .0530(8) .0066(8) .0306(7) -.0127(8) N10 .0340(6) .0563(7) .0350(6) .0059(5) .0177(5) -.0075(5) C11 .0330(6) .0386(6) .0326(6) .0019(5) .0166(5) .0008(5) C12 .0426(7) .0412(7) .0361(6) .0011(6) .0191(6) -.0055(5) C13 .0403(7) .0498(8) .0373(7) -.0068(6) .0132(6) -.0096(6) C14 .0316(6) .0477(7) .0392(7) .0000(5) .0142(5) -.0013(6) C15 .0343(6) .0339(6) .0344(6) .0030(5) .0164(5) .0020(5) C16 .0326(6) .0356(6) .0373(6) -.0012(5) .0151(5) -.0043(5) C17 .0321(6) .0374(7) .0380(6) .0052(5) .0146(5) -.0008(5) C18 .0315(6) .0380(7) .0409(7) .0073(5) .0174(5) .0016(5) C19 .0470(7) .0495(8) .0413(7) .0059(6) .0201(6) .0009(6) C20 .0595(9) .0515(9) .0512(8) .0077(7) .0257(7) .0146(7) C21 .0540(9) .0393(7) .0650(10) .0048(6) .0274(8) .0079(7) N22 .0529(7) .0399(6) .0564(7) .0013(5) .0261(6) -.0024(5) C23 .0460(7) .0399(7) .0435(7) .0026(6) .0215(6) .0001(6) C24 .0409(7) .0419(7) .0474(7) .0038(6) .0243(6) -.0034(6) C25 .0416(7) .0468(7) .0473(7) -.0057(6) .0240(6) -.0060(6) C26 .0568(8) .0439(7) .0466(8) -.0082(6) .0317(7) -.0079(6) C27 .0547(8) .0460(8) .0451(8) -.0106(6) .0185(7) -.0065(6) C28 .0457(7) .0458(8) .0479(8) -.0062(6) .0199(6) .0004(6) O29 .0725(7) .0606(7) .0773(8) -.0160(6) .0490(7) -.0096(6) O30 .0995(10) .0443(6) .0866(9) -.0130(6) .0646(8) -.0072(6) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0181 .0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N .0311 .0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0492 .0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C6 N10 C11 127.88(11) C6 N10 H10 115.2(11) C11 N10 H10 114.3(10) C23 C18 C19 116.61(12) C23 C18 C17 121.88(11) C19 C18 C17 121.46(12) C14 C15 C16 119.01(11) C14 C15 C17 120.97(11) C16 C15 C17 120.01(11) C17 C24 C25 128.66(12) C17 C24 H24 117.2(9) C25 C24 H24 114.1(9) C24 C17 C18 119.89(11) C24 C17 C15 123.15(12) C18 C17 C15 116.94(10) C11 C16 C15 120.67(11) C11 C16 H16 119.7 C15 C16 H16 119.7 C12 C11 C16 119.46(11) C12 C11 N10 117.64(11) C16 C11 N10 122.85(11) N7 C6 N5 118.46(12) N7 C6 N10 122.26(11) N5 C6 N10 119.28(11) C6 N5 C4 126.25(11) C6 N5 H5 116.1(11) C4 N5 H5 116.9(11) N5 C4 C1 111.01(13) N5 C4 C2 109.39(12) C1 C4 C2 111.49(14) N5 C4 C3 105.83(11) C1 C4 C3 110.10(14) C2 C4 C3 108.84(13) C8 N7 C6 122.01(12) C13 C14 C15 120.08(12) C13 C14 H14 120.0 C15 C14 H14 120.0 C12 C13 C14 120.74(12) C12 C13 H13 119.6 C14 C13 H13 119.6 N22 C23 C18 123.94(13) N22 C23 H23 118.0 C18 C23 H23 118.0 C28 O30 H30 109.9(15) C13 C12 C11 119.87(11) C13 C12 H12 120.1 C11 C12 H12 120.1 C20 C19 C18 119.93(14) C20 C19 H19 120.0 C18 C19 H19 120.0 C23 N22 C21 117.90(13) C27 C26 C25 112.38(11) C27 C26 H26A 109.1 C25 C26 H26A 109.1 C27 C26 H26B 109.1 C25 C26 H26B 109.1 H26A C26 H26B 107.9 N9 C8 N7 172.12(15) C24 C25 C26 112.07(12) C24 C25 H25A 109.2 C26 C25 H25A 109.2 C24 C25 H25B 109.2 C26 C25 H25B 109.2 H25A C25 H25B 107.9 O29 C28 O30 122.32(14) O29 C28 C27 124.44(13) O30 C28 C27 113.20(12) N22 C21 C20 122.71(14) N22 C21 H21 118.6 C20 C21 H21 118.6 C28 C27 C26 111.67(12) C28 C27 H27A 109.3 C26 C27 H27A 109.3 C28 C27 H27B 109.3 C26 C27 H27B 109.3 H27A C27 H27B 107.9 C21 C20 C19 118.85(14) C21 C20 H20 120.6 C19 C20 H20 120.6 C4 C2 H2A 109.5 C4 C2 H2B 109.5 H2A C2 H2B 109.5 C4 C2 H2C 109.5 H2A C2 H2C 109.5 H2B C2 H2C 109.5 C4 C3 H3A 109.5 C4 C3 H3B 109.5 H3A C3 H3B 109.5 C4 C3 H3C 109.5 H3A C3 H3C 109.5 H3B C3 H3C 109.5 C4 C1 H1A 109.5 C4 C1 H1B 109.5 H1A C1 H1B 109.5 C4 C1 H1C 109.5 H1A C1 H1C 109.5 H1B C1 H1C 109.5 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance N10 C6 1.3621(17) N10 C11 1.4173(16) N10 H10 .877(17) C18 C23 1.3887(18) C18 C19 1.3903(18) C18 C17 1.4892(18) C15 C14 1.3916(18) C15 C16 1.3950(17) C15 C17 1.4954(16) C24 C17 1.3344(18) C24 C25 1.4954(19) C24 H24 .969(16) C16 C11 1.3916(16) C16 H16 .9300 C11 C12 1.3901(18) C6 N7 1.3226(16) C6 N5 1.3371(16) N5 C4 1.4804(17) N5 H5 .865(17) C4 C1 1.517(2) C4 C2 1.521(2) C4 C3 1.5219(19) N7 C8 1.3080(17) C14 C13 1.3848(19) C14 H14 .9300 C13 C12 1.3810(19) C13 H13 .9300 C23 N22 1.3330(18) C23 H23 .9300 O29 C28 1.2028(17) O30 C28 1.3192(17) O30 H30 1.01(3) C12 H12 .9300 C19 C20 1.379(2) C19 H19 .9300 N22 C21 1.3359(19) C26 C27 1.527(2) C26 C25 1.529(2) C26 H26A .9700 C26 H26B .9700 N9 C8 1.1504(18) C25 H25A .9700 C25 H25B .9700 C28 C27 1.499(2) C21 C20 1.371(2) C21 H21 .9300 C27 H27A .9700 C27 H27B .9700 C20 H20 .9300 C2 H2A .9600 C2 H2B .9600 C2 H2C .9600 C3 H3A .9600 C3 H3B .9600 C3 H3C .9600 C1 H1A .9600 C1 H1B .9600 C1 H1C .9600 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N5 H5 O29 1_555 2.206(18) 3.019(2) 156.4(14) N10 H10 N9 3_756 2.159(17) 3.014(2) 165.0(16) O30 H30 N22 1_545 1.69(3) 2.677(2) 164(3) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C25 C24 C17 C18 -178.61(13) C25 C24 C17 C15 3.1(2) C23 C18 C17 C24 40.04(18) C19 C18 C17 C24 -137.36(14) C23 C18 C17 C15 -141.58(12) C19 C18 C17 C15 41.02(17) C14 C15 C17 C24 59.98(18) C16 C15 C17 C24 -119.53(14) C14 C15 C17 C18 -118.34(13) C16 C15 C17 C18 62.15(16) C14 C15 C16 C11 -4.34(18) C17 C15 C16 C11 175.18(11) C15 C16 C11 C12 4.54(19) C15 C16 C11 N10 -178.06(11) C6 N10 C11 C12 -141.37(14) C6 N10 C11 C16 41.2(2) C11 N10 C6 N7 -176.67(13) C11 N10 C6 N5 4.0(2) N7 C6 N5 C4 8.4(2) N10 C6 N5 C4 -172.22(13) C6 N5 C4 C1 -66.44(18) C6 N5 C4 C2 57.01(18) C6 N5 C4 C3 174.12(14) N5 C6 N7 C8 -179.36(14) N10 C6 N7 C8 1.3(2) C16 C15 C14 C13 1.13(19) C17 C15 C14 C13 -178.39(12) C15 C14 C13 C12 1.9(2) C19 C18 C23 N22 2.7(2) C17 C18 C23 N22 -174.80(12) C14 C13 C12 C11 -1.7(2) C16 C11 C12 C13 -1.50(19) N10 C11 C12 C13 -179.04(12) C23 C18 C19 C20 -1.25(19) C17 C18 C19 C20 176.27(12) C18 C23 N22 C21 -2.1(2) C6 N7 C8 N9 -169.1(13) C17 C24 C25 C26 118.85(16) C27 C26 C25 C24 -71.72(15) C23 N22 C21 C20 -.1(2) O29 C28 C27 C26 116.81(17) O30 C28 C27 C26 -60.95(17) C25 C26 C27 C28 -63.41(16) N22 C21 C20 C19 1.4(2) C18 C19 C20 C21 -.7(2)