#------------------------------------------------------------------------------ #$Date: 2016-02-19 22:18:51 +0000 (Fri, 19 Feb 2016) $ #$Revision: 176760 $ #$URL: svn://www.crystallography.net/cod/cif/2/01/14/2011459.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2011459 loop_ _publ_author_name 'Bates, Robert B.' 'Carducci, Michael D.' 'Diez, Anna' 'Forns, Pilar' 'Kane, Vinayak V.' 'Rubiralta, Mario' _publ_section_title ; Absolute configuration of a C~2~-symmetric bis(thiophenol) ; _journal_issue 10 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first e484 _journal_page_last e484 _journal_paper_doi 10.1107/S0108270100012506 _journal_volume 56 _journal_year 2000 _chemical_formula_moiety 'C39 H54 O4 S2' _chemical_formula_sum 'C39 H54 O4 S2' _chemical_formula_weight 650.94 _chemical_melting_point 410.1(10) _chemical_name_systematic ; (1S,2S)-1,2-bis(2'-thiophenyl)cyclopentane bis-(-)- menthylcarbonate ; _space_group_IT_number 178 _symmetry_cell_setting hexagonal _symmetry_space_group_name_Hall 'P 61 2 (0 0 5)' _symmetry_space_group_name_H-M 'P 61 2 2' _audit_creation_method SHELXL97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 120.00 _cell_formula_units_Z 6 _cell_length_a 9.3218(7) _cell_length_b 9.3218(7) _cell_length_c 73.631(8) _cell_measurement_reflns_used 5895 _cell_measurement_temperature 170(2) _cell_measurement_theta_max 20.96 _cell_measurement_theta_min 2.52 _cell_volume 5541.0(8) _computing_cell_refinement 'SAINT (Bruker, 1997)' _computing_data_collection 'SMART (Bruker, 1997)' _computing_data_reduction 'SAINT and SHELXTL (Bruker, 1997)' _computing_publication_material SHELXTL _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 170(2) _diffrn_measured_fraction_theta_full .998 _diffrn_measured_fraction_theta_max .998 _diffrn_measurement_device_type 'Bruker CCD area-detector' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength .71073 _diffrn_reflns_av_R_equivalents .087 _diffrn_reflns_av_sigmaI/netI .0522 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min -11 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min -10 _diffrn_reflns_limit_l_max 88 _diffrn_reflns_limit_l_min -87 _diffrn_reflns_number 46321 _diffrn_reflns_theta_full 25.50 _diffrn_reflns_theta_max 25.50 _diffrn_reflns_theta_min 1.66 _diffrn_standards_decay_% 0 _diffrn_standards_interval_time 2820 _diffrn_standards_number 297 _exptl_absorpt_coefficient_mu .182 _exptl_absorpt_correction_T_max .977 _exptl_absorpt_correction_T_min .879 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Sheldrick, 1997)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.170 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 2112 _exptl_crystal_size_max .35 _exptl_crystal_size_mid .22 _exptl_crystal_size_min .02 _refine_diff_density_max .19 _refine_diff_density_min -.22 _refine_ls_abs_structure_details 'Flack (1983), 975 Friedel pairs' _refine_ls_abs_structure_Flack .03(11) _refine_ls_extinction_coef .0040(5) _refine_ls_extinction_method SHELXL97 _refine_ls_goodness_of_fit_ref 1.000 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 209 _refine_ls_number_reflns 3445 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.000 _refine_ls_R_factor_all .093 _refine_ls_R_factor_gt .045 _refine_ls_shift/su_max .002 _refine_ls_shift/su_mean .000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0604P)^2^+1.0971P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref .119 _reflns_number_gt 2275 _reflns_number_total 3445 _reflns_threshold_expression I>2\s(I) _cod_data_source_file qa0388.cif _cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Hexagonal' changed to 'hexagonal' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_chemical_melting_point' value '136-138 C' was changed to '410.1(10)' - it was converted from degrees Celsius(C) to Kelvins(K), the average value was taken and precision was estimated. Automatic conversion script Id: cif_fix_values 1646 2011-03-28 12:23:43Z adriana The following automatic conversions were performed: '_chemical_melting_point' value '136-138 C' was changed to '410.1(10)' - it was converted from degrees Celsius(C) to Kelvins(K), the average value was taken and precision was estimated. '_symmetry_cell_setting' value 'Hexagonal' changed to 'hexagonal' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2011459 _cod_database_fobs_code 2011459 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-y, x-y, z+1/3' '-x+y, -x, z+2/3' '-x, -y, z+1/2' 'y, -x+y, z+5/6' 'x-y, x, z+1/6' 'y, x, -z+1/3' 'x-y, -y, -z' '-x, -x+y, -z+2/3' '-y, -x, -z+5/6' '-x+y, y, -z+1/2' 'x, x-y, -z+1/6' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol S1 .42837(10) .94525(8) .038077(9) .0476(2) Uani d . 1 . . S O1 .4573(2) .9375(2) .07214(2) .0458(5) Uani d . 1 . . O O2 .5655(3) 1.1976(2) .06127(2) .0561(6) Uani d . 1 . . O C6 .4955(4) 1.0499(3) .05917(3) .0429(7) Uani d . 1 . . C C7 .5041(4) 1.0019(3) .09096(3) .0428(7) Uani d . 1 . . C H7A .4861 1.0982 .0927 .051 Uiso calc R 1 . . H C8 .3898(4) .8613(3) .10353(3) .0433(7) Uani d . 1 . . C H8A .4135 .7690 .1016 .052 Uiso calc R 1 . . H C12 .6843(4) 1.0565(4) .09414(3) .0492(7) Uani d . 1 . . C H12A .7535 1.1477 .0857 .059 Uiso calc R 1 . . H H12B .7029 .9629 .0915 .059 Uiso calc R 1 . . H C2' .5189(4) 1.1192(3) .02316(3) .0450(7) Uani d . 1 . . C C9 .4425(4) .9234(4) .12306(3) .0545(8) Uani d . 1 . . C H9A .4237 1.0174 .1253 .065 Uiso calc R 1 . . H H9B .3724 .8336 .1316 .065 Uiso calc R 1 . . H C4 -.0299(5) 1.0000 .0000 .0675(13) Uani d S 1 . . C H4A -.0631 1.0544 -.0087 .081 Uiso d R 1 . . H C1' .4233(3) 1.1554(3) .01144(3) .0428(7) Uani d . 1 . . C C1 .2398(3) 1.0454(3) .00927(3) .0435(7) Uani d . 1 . . C H1A .1996 .9601 .0191 .052 Uiso calc R 1 . . H C11 .7377(4) 1.1148(4) .11357(4) .0508(8) Uani d . 1 . . C H11A .7252 1.2139 .1157 .061 Uiso calc R 1 . . H C6' .5087(4) 1.2957(4) .00040(4) .0548(8) Uani d . 1 . . C H6'A .4472 1.3238 -.0077 .066 Uiso calc R 1 . . H C3' .6907(4) 1.2161(4) .02328(4) .0616(9) Uani d . 1 . . C H3'A .7540 1.1879 .0311 .074 Uiso calc R 1 . . H C5 .1303(4) 1.1253(4) .00921(4) .0626(9) Uani d . 1 . . C H5A .1088 1.1476 .0218 .075 Uiso calc R 1 . . H H5B .1843 1.2309 .0024 .075 Uiso calc R 1 . . H C10 .6225(4) .9785(4) .12664(4) .0565(8) Uani d . 1 . . C H10A .6396 .8823 .1254 .068 Uiso calc R 1 . . H H10B .6507 1.0196 .1393 .068 Uiso calc R 1 . . H C16 .9186(4) 1.1656(4) .11673(4) .0711(10) Uani d . 1 . . C H16A .9502 1.2069 .1292 .107 Uiso calc R 1 . . H H16B .9887 1.2530 .1081 .107 Uiso calc R 1 . . H H16C .9332 1.0695 .1149 .107 Uiso calc R 1 . . H C5' .6768(5) 1.3933(4) .00085(4) .0698(10) Uani d . 1 . . C H5'A .7299 1.4893 -.0066 .084 Uiso calc R 1 . . H C4' .7702(4) 1.3535(4) .01207(4) .0756(11) Uani d . 1 . . C H4'A .8876 1.4195 .0121 .091 Uiso calc R 1 . . H C15 .0958(4) .6417(5) .11153(5) .0793(11) Uani d . 1 . . C H15A .1378 .5641 .1113 .119 Uiso calc R 1 . . H H15B -.0180 .5866 .1069 .119 Uiso calc R 1 . . H H15C .0974 .6782 .1240 .119 Uiso calc R 1 . . H C13 .2051(4) .7916(4) .09966(4) .0537(8) Uani d . 1 . . C H13A .1859 .7519 .0868 .064 Uiso calc R 1 . . H C14 .1493(4) .9194(5) .10114(5) .0759(11) Uani d . 1 . . C H14A .0306 .8665 .0985 .114 Uiso calc R 1 . . H H14B .2112 1.0090 .0924 .114 Uiso calc R 1 . . H H14C .1701 .9649 .1135 .114 Uiso calc R 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 S1 .0635(5) .0379(4) .0334(4) .0194(4) -.0028(3) .0000(3) O1 .0742(14) .0363(10) .0280(9) .0284(10) .0002(9) .0005(8) O2 .0904(16) .0383(12) .0379(11) .0309(12) .0041(10) .0004(9) C6 .0586(18) .0368(17) .0368(15) .0266(15) .0047(13) .0033(13) C7 .0638(19) .0379(15) .0328(14) .0299(14) .0007(13) -.0037(11) C8 .064(2) .0415(16) .0315(14) .0316(15) .0052(13) .0032(12) C12 .065(2) .0448(17) .0410(16) .0302(16) .0019(14) .0011(14) C2' .0522(19) .0390(16) .0308(14) .0131(15) .0025(13) -.0049(12) C9 .077(2) .061(2) .0295(14) .0376(18) .0066(14) .0042(13) C4 .069(2) .083(4) .055(3) .0417(18) .0049(13) .010(3) C1' .0596(19) .0316(16) .0273(14) .0153(15) .0051(13) -.0018(12) C1 .0552(19) .0404(16) .0301(13) .0202(15) .0028(13) .0007(12) C11 .068(2) .0495(18) .0449(17) .0365(17) -.0095(15) -.0067(14) C6' .077(2) .0364(17) .0350(15) .0163(18) .0026(15) .0015(13) C3' .054(2) .064(2) .0467(18) .0145(18) -.0012(15) -.0062(16) C5 .077(2) .069(2) .0533(19) .045(2) .0014(17) -.0056(17) C10 .076(2) .062(2) .0402(16) .0407(18) -.0080(16) -.0009(15) C16 .068(2) .071(2) .079(2) .038(2) -.0138(18) -.0059(18) C5' .086(3) .0411(19) .0391(18) .000(2) .0160(18) .0011(15) C4' .061(2) .066(2) .052(2) -.0046(19) .0112(18) -.0043(18) C15 .069(2) .072(2) .084(2) .026(2) .013(2) .017(2) C13 .065(2) .058(2) .0397(16) .0312(18) .0020(14) .0002(14) C14 .077(3) .089(3) .080(2) .055(2) -.004(2) .005(2) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0033 .0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0106 .0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S .1246 .1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle C6 S1 C2' . . 99.38(12) C6 O1 C7 . . 116.28(19) O2 C6 O1 . . 126.1(2) O2 C6 S1 . . 125.6(2) O1 C6 S1 . . 108.31(19) O1 C7 C12 . . 109.4(2) O1 C7 C8 . . 106.3(2) C12 C7 C8 . . 112.2(2) O1 C7 H7A . . 109.6 C12 C7 H7A . . 109.6 C8 C7 H7A . . 109.6 C7 C8 C13 . . 114.0(2) C7 C8 C9 . . 106.9(2) C13 C8 C9 . . 114.4(2) C7 C8 H8A . . 107.0 C13 C8 H8A . . 107.0 C9 C8 H8A . . 107.0 C7 C12 C11 . . 112.1(2) C7 C12 H12A . . 109.2 C11 C12 H12A . . 109.2 C7 C12 H12B . . 109.2 C11 C12 H12B . . 109.2 H12A C12 H12B . . 107.9 C3' C2' C1' . . 120.9(3) C3' C2' S1 . . 117.0(2) C1' C2' S1 . . 122.1(2) C10 C9 C8 . . 112.5(2) C10 C9 H9A . . 109.1 C8 C9 H9A . . 109.1 C10 C9 H9B . . 109.1 C8 C9 H9B . . 109.1 H9A C9 H9B . . 107.8 C5 C4 C5 . 8_675 106.5(4) C5 C4 H4A . . 110.2 C5 C4 H4A 8_675 . 110.9 C2' C1' C6' . . 116.8(3) C2' C1' C1 . . 123.2(2) C6' C1' C1 . . 119.9(3) C1' C1 C5 . . 118.4(2) C1' C1 C1 . 8_675 111.96(18) C5 C1 C1 . 8_675 101.31(17) C1' C1 H1A . . 108.2 C5 C1 H1A . . 108.2 C1 C1 H1A 8_675 . 108.2 C12 C11 C16 . . 111.6(2) C12 C11 C10 . . 109.1(2) C16 C11 C10 . . 111.8(2) C12 C11 H11A . . 108.1 C16 C11 H11A . . 108.1 C10 C11 H11A . . 108.1 C5' C6' C1' . . 122.4(3) C5' C6' H6'A . . 118.8 C1' C6' H6'A . . 118.8 C4' C3' C2' . . 120.4(3) C4' C3' H3'A . . 119.8 C2' C3' H3'A . . 119.8 C4 C5 C1 . . 105.3(3) C4 C5 H5A . . 110.7 C1 C5 H5A . . 110.7 C4 C5 H5B . . 110.7 C1 C5 H5B . . 110.7 H5A C5 H5B . . 108.8 C9 C10 C11 . . 111.9(2) C9 C10 H10A . . 109.2 C11 C10 H10A . . 109.2 C9 C10 H10B . . 109.2 C11 C10 H10B . . 109.2 H10A C10 H10B . . 107.9 C11 C16 H16A . . 109.5 C11 C16 H16B . . 109.5 H16A C16 H16B . . 109.5 C11 C16 H16C . . 109.5 H16A C16 H16C . . 109.5 H16B C16 H16C . . 109.5 C6' C5' C4' . . 120.3(3) C6' C5' H5'A . . 119.8 C4' C5' H5'A . . 119.8 C5' C4' C3' . . 119.2(3) C5' C4' H4'A . . 120.4 C3' C4' H4'A . . 120.4 C13 C15 H15A . . 109.5 C13 C15 H15B . . 109.5 H15A C15 H15B . . 109.5 C13 C15 H15C . . 109.5 H15A C15 H15C . . 109.5 H15B C15 H15C . . 109.5 C14 C13 C15 . . 110.0(3) C14 C13 C8 . . 113.9(3) C15 C13 C8 . . 112.1(2) C14 C13 H13A . . 106.8 C15 C13 H13A . . 106.8 C8 C13 H13A . . 106.8 C13 C14 H14A . . 109.5 C13 C14 H14B . . 109.5 H14A C14 H14B . . 109.5 C13 C14 H14C . . 109.5 H14A C14 H14C . . 109.5 H14B C14 H14C . . 109.5 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag S1 C6 . 1.773(3) ? S1 C2' . 1.783(3) ? O1 C6 . 1.328(3) ? O1 C7 . 1.487(3) ? O2 C6 . 1.203(3) ? C7 C12 . 1.510(4) ? C7 C8 . 1.521(4) ? C7 H7A . 1.0000 ? C8 C13 . 1.532(4) ? C8 C9 . 1.536(4) ? C8 H8A . 1.0000 ? C12 C11 . 1.523(4) ? C12 H12A . .9900 ? C12 H12B . .9900 ? C2' C3' . 1.391(4) ? C2' C1' . 1.398(4) ? C9 C10 . 1.512(4) ? C9 H9A . .9900 ? C9 H9B . .9900 ? C4 C5 . 1.520(4) ? C4 C5 8_675 1.520(4) ? C4 H4A . .9602 ? C1' C6' . 1.402(4) ? C1' C1 . 1.499(4) ? C1 C5 . 1.535(4) ? C1 C1 8_675 1.550(5) ? C1 H1A . 1.0000 ? C11 C16 . 1.524(4) ? C11 C10 . 1.526(4) ? C11 H11A . 1.0000 ? C6' C5' . 1.364(4) ? C6' H6'A . .9500 ? C3' C4' . 1.387(4) ? C3' H3'A . .9500 ? C5 H5A . .9900 ? C5 H5B . .9900 ? C10 H10A . .9900 ? C10 H10B . .9900 ? C16 H16A . .9800 ? C16 H16B . .9800 ? C16 H16C . .9800 ? C5' C4' . 1.378(5) ? C5' H5'A . .9500 ? C4' H4'A . .9500 ? C15 C13 . 1.527(4) ? C15 H15A . .9800 ? C15 H15B . .9800 ? C15 H15C . .9800 ? C13 C14 . 1.524(4) ? C13 H13A . 1.0000 ? C14 H14A . .9800 ? C14 H14B . .9800 ? C14 H14C . .9800 ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_4 _geom_torsion C7 O1 C6 O2 . . .9(4) C7 O1 C6 S1 . . -179.98(18) C2' S1 C6 O2 . . 7.1(3) C2' S1 C6 O1 . . -172.02(19) C6 O1 C7 C12 . . -82.1(3) C6 O1 C7 C8 . . 156.5(2) O1 C7 C8 C13 . . -55.2(3) C12 C7 C8 C13 . . -174.9(2) O1 C7 C8 C9 . . 177.3(2) C12 C7 C8 C9 . . 57.7(3) O1 C7 C12 C11 . . -176.7(2) C8 C7 C12 C11 . . -58.9(3) C6 S1 C2' C3' . . 62.1(2) C6 S1 C2' C1' . . -119.7(2) C7 C8 C9 C10 . . -57.3(3) C13 C8 C9 C10 . . 175.5(2) C3' C2' C1' C6' . . -1.9(4) S1 C2' C1' C6' . . 179.9(2) C3' C2' C1' C1 . . 173.2(2) S1 C2' C1' C1 . . -5.0(4) C2' C1' C1 C5 . . 134.6(3) C6' C1' C1 C5 . . -50.4(3) C2' C1' C1 C1 . 8_675 -108.0(3) C6' C1' C1 C1 . 8_675 67.0(3) C7 C12 C11 C16 . . 178.6(2) C7 C12 C11 C10 . . 54.7(3) C2' C1' C6' C5' . . .2(4) C1 C1' C6' C5' . . -175.2(3) C1' C2' C3' C4' . . 1.8(4) S1 C2' C3' C4' . . -179.9(2) C5 C4 C5 C1 8_675 . -14.19(13) C1' C1 C5 C4 . . 159.4(2) C1 C1 C5 C4 8_675 . 36.5(3) C8 C9 C10 C11 . . 57.6(3) C12 C11 C10 C9 . . -54.0(3) C16 C11 C10 C9 . . -177.9(2) C1' C6' C5' C4' . . 1.8(5) C6' C5' C4' C3' . . -2.0(5) C2' C3' C4' C5' . . .2(5) C7 C8 C13 C14 . . -59.1(3) C9 C8 C13 C14 . . 64.4(3) C7 C8 C13 C15 . . 175.2(2) C9 C8 C13 C15 . . -61.3(3)