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Information card for entry 2011511
Preview
| Coordinates | 2011511.cif |
|---|---|
| Structure factors | 2011511.hkl |
| Original IUCr paper | HTML |
| Chemical name | 4-ethynyl-4-hydroxy-2,3,4,5-tetramethylcyclohexa-2,5-diene-1-one |
|---|---|
| Formula | C12 H14 O2 |
| Calculated formula | C12 H14 O2 |
| SMILES | C#CC1(O)C(=C(C)C(=O)C(=C1C)C)C |
| Title of publication | 4-Ethynyl-4-hydroxycyclohexan-1-one and 4-ethynyl-4-hydroxy-2,3,5,6-tetramethylcyclohexa-2,5-dien-1-one |
| Authors of publication | Bilton, Clair; Howard, Judith A. K.; Madhavi, N. N. Laxmi; Desiraju, Gautam R.; Allen, Frank H. |
| Journal of publication | Acta Crystallographica Section C |
| Year of publication | 2000 |
| Journal volume | 56 |
| Journal issue | 11 |
| Pages of publication | 1356 - 1358 |
| a | 9.02 ± 0.002 Å |
| b | 14.01 ± 0.003 Å |
| c | 16.612 ± 0.003 Å |
| α | 90° |
| β | 93.56 ± 0.03° |
| γ | 90° |
| Cell volume | 2095.2 ± 0.8 Å3 |
| Cell temperature | 150 K |
| Ambient diffraction temperature | 150 K |
| Number of distinct elements | 3 |
| Space group number | 14 |
| Hermann-Mauguin space group symbol | P 1 21/c 1 |
| Hall space group symbol | -P 2ybc |
| Residual factor for all reflections | 0.093 |
| Residual factor for significantly intense reflections | 0.052 |
| Weighted residual factors for all reflections included in the refinement | 0.145 |
| Goodness-of-fit parameter for all reflections included in the refinement | 1.01 |
| Diffraction radiation wavelength | 0.71073 Å |
| Diffraction radiation type | MoKα |
| Has coordinates | Yes |
| Has disorder | No |
| Has Fobs | Yes |
| Revision | Date | Message | Files |
|---|---|---|---|
| 304058 (current) | 2025-12-05 | tags/ Releasing COD code base version 0.13.0. |
2011511.cif 2011511.hkl |
| 304057 | 2025-12-05 | branches/support/cod/cod-blue-yellow/ Sync with ^/trunk/cod/. |
2011511.cif 2011511.hkl |
| 301957 | 2025-09-01 | branches/support/cod/cod-blue-yellow/ Sync with ^/trunk/cod/. |
2011511.cif 2011511.hkl |
| 301798 | 2025-08-19 | Add cross-references to PubChem compounds in COD range 2/01 Each referenced PubChem compound corresponds to the full crystal structure. |
2011511.cif 2011511.hkl |
| 300117 | 2025-06-18 | branches/support/cod/cod-blue-yellow/ Sync with ^/trunk/cod/. |
2011511.cif 2011511.hkl |
| 299995 | 2025-06-06 | branches/support/cod/cod-blue-yellow/ Sync with ^/trunk/cod/. |
2011511.cif 2011511.hkl |
| 299308 | 2025-04-17 | branches/support/cod/cod-blue-yellow/ Merge tpl/head.html to tpl/head.php, delete the former. |
2011511.cif 2011511.hkl |
| 299307 | 2025-04-17 | branches/support/cod/cod-blue-yellow/ Sync with ^/trunk/cod/. |
2011511.cif 2011511.hkl |
| 292637 | 2024-06-28 | branches/support/cod/cod-blue-yellow/ Syncing with ^/trunk. |
2011511.cif 2011511.hkl |
| 291255 | 2024-04-17 | branches/support/cod/cod-blue-yellow/ Syncing with ^/trunk. |
2011511.cif 2011511.hkl |
| 290782 | 2024-04-04 | branches/support/cod/cod-blue-yellow/ Syncing with ^/trunk. |
2011511.cif 2011511.hkl |
| 290780 | 2024-04-04 | branches/support/cod/cod-blue-yellow/ Syncing with ^/trunk. |
2011511.cif 2011511.hkl |
| 290686 | 2024-03-27 | branches/support/cod/cod-blue-yellow/ Syncing with ^/trunk. |
2011511.cif 2011511.hkl |
| 282741 | 2023-04-19 | branches/support/cod/cod-blue-yellow/ Syncing with ^/trunk. |
2011511.cif 2011511.hkl |
| 282153 | 2023-03-31 | branches/support/cod/cod-blue-yellow/ Syncing with ^/trunk. |
2011511.cif 2011511.hkl |
| 279190 | 2022-11-10 | branches/support/cod/cod-blue-yellow/ Syncing with ^/trunk. |
2011511.cif 2011511.hkl |
| 278191 | 2022-09-26 | branches/support/cod/cod-blue-yellow/ Syncing with ^/trunk. |
2011511.cif 2011511.hkl |
| 277977 | 2022-09-19 | branches/support/cod/cod-blue-yellow/ Syncing with ^/trunk. |
2011511.cif 2011511.hkl |
| 277439 | 2022-08-29 | branches/support/cod/cod-blue-yellow/ Syncing with ^/trunk. |
2011511.cif 2011511.hkl |
| 275624 | 2022-05-24 | branches/support/cod/cod-blue-yellow/ Syncing with ^/trunk. |
2011511.cif 2011511.hkl |
| 274524 | 2022-04-14 | branches/support/cod/cod-blue-yellow/ Releasing v0.10.3. |
2011511.cif 2011511.hkl |
| 274399 | 2022-04-06 | branches/support/cod/cod-blue-yellow/ Adding support and petition links to new.html. |
2011511.cif 2011511.hkl |
| 274398 | 2022-04-06 | branches/support/cod/cod-blue-yellow/ Adding news item to new.html about the position of the COD AB. |
2011511.cif 2011511.hkl |
| 274397 | 2022-04-06 | branches/support/cod/cod-blue-yellow/ Changing the logo and petition link in new.html as well. |
2011511.cif 2011511.hkl |
| 274396 | 2022-04-06 | branches/support/cod/cod-blue-yellow/ Adjusting the size of COD logo in tpl/head.html. |
2011511.cif 2011511.hkl |
| 274395 | 2022-04-06 | branches/support/cod/cod-blue-yellow/ Changing top-left logo to images/cod-blue-yellow.svg. |
2011511.cif 2011511.hkl |
| 274394 | 2022-04-06 | branches/support/cod/cod-blue-yellow/ Clipping images/cod-blue-yellow.svg. |
2011511.cif 2011511.hkl |
| 274393 | 2022-04-06 | branches/support/cod/cod-blue-yellow/ Using COD logo with colors from the flag of Ukraine. Linking the petition. |
2011511.cif 2011511.hkl |
| 274391 | 2022-04-06 | branches/ (saulius@tasmanijos-velnias) Creating the Ukraine support COD branch. Let's do what we can to stop the atrocoties! |
2011511.cif 2011511.hkl |
| 274333 | 2022-04-05 | tags/ Releasing COD code base version 0.10.2. |
2011511.cif 2011511.hkl |
| 274332 | 2022-04-05 | trunk/cod/ Releasing v0.10.2. |
2011511.cif 2011511.hkl |
| 274326 | 2022-04-04 | trunk/cod/ (antanas@echidna) Fixed a few typos in the comments of 'cif-deposit.pl'. |
2011511.cif 2011511.hkl |
| 274309 | 2022-04-04 | trunk/ (antanas@echidna) Fixed a typo ("metal-organics compounds" -> "metal-organic compound"). |
2011511.cif 2011511.hkl |
| 274211 | 2022-04-01 | trunk/cod/ Limiting maximum output items to 10 for OPTIMADE requests requiring crystal reconstruction. |
2011511.cif 2011511.hkl |
| 274210 | 2022-04-01 | trunk/cod/ Establishing deterministic order of parameter validation in cif-deposit.pl, reading 'output_mode' as early as possible. |
2011511.cif 2011511.hkl |
| 274048 | 2022-03-28 | cod/ Moving new COD images from ^/html/images/ to ^/trunk/cod/images/. |
2011511.cif 2011511.hkl |
| 273161 | 2022-02-25 | trunk/cod/ As v0.10.1 is out, preparing for the next release. |
2011511.cif 2011511.hkl |
| 273159 | 2022-02-25 | trunk/cod/ Releasing v0.10.1. |
2011511.cif 2011511.hkl |
| 273142 | 2022-02-24 | trunk/cod/ Fixing the detection of SMILES files in pre-commit-smiles-check. |
2011511.cif 2011511.hkl |
| 272822 | 2022-02-06 | trunk/cod/ Fixing the detection of 'smiles' table on MySQL/MariaDB engines in optimade.pl. |
2011511.cif 2011511.hkl |
| 272002 | 2022-01-12 | trunk/cod/ Calling 'obabel' instead of 'babel' in result.php as the name of the command line utility has been changed. |
2011511.cif 2011511.hkl |
| 271688 | 2022-01-03 | trunk/cod/ Adding the description for '_cod_smiles' OPTIMADE property. |
2011511.cif 2011511.hkl |
| 271687 | 2022-01-03 | trunk/cod/ Forgotten to commit .version. |
2011511.cif 2011511.hkl |
| 271686 | 2022-01-03 | trunk/cod/ As v0.10.0 is out, preparing for the next release. |
2011511.cif 2011511.hkl |
| 271684 | 2022-01-03 | trunk/cod/ Releasing v0.10.0. |
2011511.cif 2011511.hkl |
| 271683 | 2022-01-03 | trunk/cod/ Clarifying one of the items in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 271682 | 2022-01-03 | trunk/cod/ Adding year 2022 to the browser of publications. |
2011511.cif 2011511.hkl |
| 271559 | 2021-12-21 | trunk/cod/ Removing '_refine_ls_R_factor_ref' CIF data item from prepublication stubs. |
2011511.cif 2011511.hkl |
| 271538 | 2021-12-20 | trunk/cod/ Replacing '_symmetry_space_group_name_*' CIF data items in prepublication stubs with '_space_group_name_*'. |
2011511.cif 2011511.hkl |
| 271522 | 2021-12-20 | trunk/cod/ Adding RELEASE-CHECKLIST.txt. |
2011511.cif 2011511.hkl |
| 271521 | 2021-12-20 | trunk/cod/ Updating repository-hooks/xml/ to r271520. |
2011511.cif 2011511.hkl |
| 271520 | 2021-12-20 | trunk/cod/ Fixing the version number in database-description_v1.1.1.xml. |
2011511.cif 2011511.hkl |
| 271519 | 2021-12-20 | trunk/cod/ Fixing the remaining CIF data item swap in prepublication stubs. |
2011511.cif 2011511.hkl |
| 271518 | 2021-12-20 | trunk/ Fixing CIF data item order in prepublication stubs. |
2011511.cif 2011511.hkl |
| 271502 | 2021-12-17 | trunk/cod/ Fixing 'chemical_formula_anonymous': incorrect order was used before and there were problems with producing element names past 'Z'. |
2011511.cif 2011511.hkl |
| 271501 | 2021-12-17 | trunk/cod/ Updating outdated OPTIMADE tests. |
2011511.cif 2011511.hkl |
| 271500 | 2021-12-17 | trunk/cod/ Fixing handling slashes in query string in optimade.pl. |
2011511.cif 2011511.hkl |
| 271499 | 2021-12-17 | trunk/cod/ Limiting OPTIMADE endpoints in 'entry_types_by_format' to references and structures. Not sure why optimade-validator forbids /info. |
2011511.cif 2011511.hkl |
| 271498 | 2021-12-17 | trunk/cod/ OPTIMADE endpoint 'versions' is not in JSON format. |
2011511.cif 2011511.hkl |
| 271497 | 2021-12-17 | trunk/cod/ Updating the source version in optimade.pl. |
2011511.cif 2011511.hkl |
| 271496 | 2021-12-17 | trunk/cod/ (antanas@echidna) Changed the planned release version to 0.10.0. |
2011511.cif 2011511.hkl |
| 271495 | 2021-12-17 | trunk/cod/ Writing data items in prepublication "stub" CIF files in more natural order, as if ordered by cif_filter. |
2011511.cif 2011511.hkl |
| 271494 | 2021-12-17 | trunk/cod/ Adding '_DB_database_code' CIF data item to prepublication entries. |
2011511.cif 2011511.hkl |
| 271380 | 2021-12-14 | trunk/cod/ Simplifying the code in optimade.pl. |
2011511.cif 2011511.hkl |
| 271379 | 2021-12-14 | trunk/cod/ Reading in OPTIMADE property descriptions from the schema in optimade.pl. |
2011511.cif 2011511.hkl |
| 271247 | 2021-12-07 | trunk/cod/ Specifying units for wavelength in optimade.pl. |
2011511.cif 2011511.hkl |
| 271246 | 2021-12-07 | trunk/cod/ Adding units to database-description_v1.2.0-dev.xml. |
2011511.cif 2011511.hkl |
| 271245 | 2021-12-07 | trunk/cod/ Starting the development of database-description_v1.2.0.xml. |
2011511.cif 2011511.hkl |
| 271244 | 2021-12-07 | trunk/cod/ Using proper database prefix for database-specific properties in /structures/info in optimade.pl (used to break TCOD). |
2011511.cif 2011511.hkl |
| 271243 | 2021-12-07 | trunk/cod/ Cleaning up commented out code in optimade.pl. |
2011511.cif 2011511.hkl |
| 271136 | 2021-12-06 | trunk/ Adding '_cod_smiles' to the output of optimade.pl. Silencing DBI messages. |
2011511.cif 2011511.hkl |
| 271006 | 2021-12-03 | trunk/cod/ Setting User-Agent HTTP header in requests in optimade.pl. |
2011511.cif 2011511.hkl |
| 270984 | 2021-12-02 | trunk/cod/ Silencing 'deep recursion' Perl warnings in optimade.pl. |
2011511.cif 2011511.hkl |
| 270959 | 2021-12-01 | trunk/cod/ Fixing handling of undefined formulae in optimade.pl. |
2011511.cif 2011511.hkl |
| 270926 | 2021-11-30 | trunk/cod/ Adding 'response_fields' to the OPTIMADE pagination URLs. |
2011511.cif 2011511.hkl |
| 270888 | 2021-11-26 | trunk/cod/ Printing author names from CIF in Unicode in error messages in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 270887 | 2021-11-26 | trunk/cod/ Updating cod-tools to v3.4.0 under lib/ and repository-hooks/. |
2011511.cif 2011511.hkl |
| 270886 | 2021-11-26 | trunk/cod/ Fixing outdated 'available_endpoints' and 'entry_types_by_format' attributes of OPTIMADE base URL info endpoint. |
2011511.cif 2011511.hkl |
| 270805 | 2021-11-22 | trunk/cod/ Merging in the changes from v0.9.3 release tag: svn merge ^/tags/v0.9.3 |
2011511.cif 2011511.hkl |
| 270091 | 2021-10-28 | trunk/cod/ URL-encoding DOIs in information_card.php. |
2011511.cif 2011511.hkl |
| 270090 | 2021-10-26 | trunk/cod/ Adding 'chemical_formula_anonymous' to the output of optimade.pl. |
2011511.cif 2011511.hkl |
| 270089 | 2021-10-26 | trunk/cod/ Outputting 'chemical_formula_reduced' for structures with all integer element proportions in OPTIMADE. |
2011511.cif 2011511.hkl |
| 270088 | 2021-10-26 | trunk/cod/ 'chemical_formula_hill' can contain only integers in optimade.pl. |
2011511.cif 2011511.hkl |
| 270086 | 2021-10-25 | trunk/cod/tests/ Updating outputs. |
2011511.cif 2011511.hkl |
| 270085 | 2021-10-25 | trunk/cod/ Adding 'issue_tracker' field to OPTIMADE outputs. |
2011511.cif 2011511.hkl |
| 270084 | 2021-10-25 | trunk/cod/ Bumping OPTIMADE API version to v1.1.0. |
2011511.cif 2011511.hkl |
| 270083 | 2021-10-25 | trunk/cod/ Fixing formula simplification logic which malformed formulae in optimade.pl. |
2011511.cif 2011511.hkl |
| 270082 | 2021-10-25 | trunk/cod/tests/ Adding a test showcasing problems with formulae parsing failures. |
2011511.cif 2011511.hkl |
| 270081 | 2021-10-25 | trunk/cod/ Removing empty query string parameters in optimade.pl. |
2011511.cif 2011511.hkl |
| 270080 | 2021-10-25 | trunk/cod/tests/ Adding a test showcasing the problem with empty query string fragment (https://projects.ibt.lt/repositories/issues/1123). |
2011511.cif 2011511.hkl |
| 270079 | 2021-10-25 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 270078 | 2021-10-25 | trunk/cod/ Increasing 'page_limit' to 100 for queries not requiring cell reconstruction in OPTIMADE. |
2011511.cif 2011511.hkl |
| 270015 | 2021-10-19 | trunk/cod/ As v0.9.2 is out, preparing for the next release. |
2011511.cif 2011511.hkl |
| 270014 | 2021-10-19 | trunk/cod/ Releasing v0.9.2. |
2011511.cif 2011511.hkl |
| 269898 | 2021-10-12 | trunk/cod/ (antanas@echidna) Changed: updated one of the URLs to use https. |
2011511.cif 2011511.hkl |
| 269897 | 2021-10-12 | trunk/cod/cgi-bin/ (antanas@echidna) Fixed: a typo in a comment. |
2011511.cif 2011511.hkl |
| 269864 | 2021-10-08 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 269863 | 2021-10-08 | trunk/cod/ Bugfix: changing the checked statement in optimade.pl. |
2011511.cif 2011511.hkl |
| 269862 | 2021-10-08 | trunk/cod/ Bugfix: fixing recently added regular expression in optimade.pl. |
2011511.cif 2011511.hkl |
| 269861 | 2021-10-08 | trunk/cod/ Catching and reporting not implemented support for chemical formulae in optimade.pl. |
2011511.cif 2011511.hkl |
| 269818 | 2021-10-07 | trunk/cod/ Ceasing to write nonimportant messages to server-side logs in optimade.pl. |
2011511.cif 2011511.hkl |
| 269581 | 2021-10-05 | trunk/ (antanas@kurmis) Fixed: updated several web links in index.php. |
2011511.cif 2011511.hkl |
| 269431 | 2021-10-01 | trunk/cod/ As v0.9.1 is out, preparing for the next release. |
2011511.cif 2011511.hkl |
| 269429 | 2021-10-01 | trunk/cod/ Releasing v0.9.1. |
2011511.cif 2011511.hkl |
| 269428 | 2021-10-01 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 269427 | 2021-10-01 | trunk/cod/ Terminating <a> element on the same line with text in license_link.html in order to avoid a space in the link. |
2011511.cif 2011511.hkl |
| 269426 | 2021-10-01 | trunk/cod/ Adding forgotten tpl/license_link.html symlink. |
2011511.cif 2011511.hkl |
| 269425 | 2021-10-01 | trunk/cod/ Fixing the issue with inability to find license link include. |
2011511.cif 2011511.hkl |
| 269424 | 2021-10-01 | trunk/cod/ Adding period terminating sentence in tpl/foot.html. |
2011511.cif 2011511.hkl |
| 269423 | 2021-10-01 | trunk/cod/ As v0.9.0 is out, preparing for the next release. |
2011511.cif 2011511.hkl |
| 269421 | 2021-10-01 | trunk/cod/ Releasing v0.9.0. |
2011511.cif 2011511.hkl |
| 269323 | 2021-09-27 | trunk/cod/ Excluding entries with NULLs for 'date' and 'time' in optimade.pl. |
2011511.cif 2011511.hkl |
| 269319 | 2021-09-27 | trunk/cod/ Implementing support for 'last_modified' in optimade.pl. Currently, undefined values are selected as matching, will be fixed soon. |
2011511.cif 2011511.hkl |
| 269290 | 2021-09-24 | trunk/cod/ Implementing support for timestamp comparisons for SQLite databases in optimade.pl. |
2011511.cif 2011511.hkl |
| 269289 | 2021-09-24 | trunk/cod/ Preparing to support queries on 'last_modified' in optimade.pl. Adding commented-out code part, as well as a fail case. |
2011511.cif 2011511.hkl |
| 269288 | 2021-09-24 | trunk/cod/ Reporting unknown endpoints with HTTP 404 instead of 400 in optimade.pl. |
2011511.cif 2011511.hkl |
| 269287 | 2021-09-24 | trunk/cod/tests/ Annotating cgi-tests/optimade.pl_033.filter. |
2011511.cif 2011511.hkl |
| 269286 | 2021-09-24 | trunk/cod/ Catching and reporting attempts to access /versions endpoint under versioned base URL in optimade.pl. |
2011511.cif 2011511.hkl |
| 269285 | 2021-09-24 | trunk/cod/ Updated cod-tools to v3.3.0 under repository-hooks/. |
2011511.cif 2011511.hkl |
| 269284 | 2021-09-24 | trunk/cod/ Adjusting CHANGELOG to reflect recent developments. |
2011511.cif 2011511.hkl |
| 269283 | 2021-09-24 | trunk/cod/ Switching to the released cod-tools v3.3.0. |
2011511.cif 2011511.hkl |
| 269282 | 2021-09-24 | trunk/cod/ Switching to v3.3.0 release branch of cod-tools. Undoing adjustments needed to lower ADP message levels ad-hoc. |
2011511.cif 2011511.hkl |
| 269257 | 2021-09-23 | trunk/cod/ Fixing problems with unclosed DIVs in generated HTML. |
2011511.cif 2011511.hkl |
| 269256 | 2021-09-23 | trunk/cod/ Reformatting HTML a bit. |
2011511.cif 2011511.hkl |
| 269255 | 2021-09-23 | trunk/cod/tests/ Adjusting outputs of PHP tests due to the addition of license. |
2011511.cif 2011511.hkl |
| 269254 | 2021-09-23 | trunk/cod/ Replacing 'attribute' with 'acknowledge' in the footer. |
2011511.cif 2011511.hkl |
| 269253 | 2021-09-23 | trunk/cod/ Removing "CC0" from links. |
2011511.cif 2011511.hkl |
| 269183 | 2021-09-17 | trunk/cod/ Adding link to the license to the documentation box in the sidebar. |
2011511.cif 2011511.hkl |
| 269182 | 2021-09-17 | trunk/cod/ Moving license link to a separate file to maintain SPOT. |
2011511.cif 2011511.hkl |
| 269181 | 2021-09-17 | trunk/cod/ Returning '"lattice_vectors": null' for structures without cell parameters in optimade.pl. Previous commit contains only changes to the test, not the script. |
2011511.cif 2011511.hkl |
| 269180 | 2021-09-17 | trunk/cod/tests/ Returning '"lattice_vectors": null' for structures without cell parameters in optimade.pl. |
2011511.cif 2011511.hkl |
| 269179 | 2021-09-17 | trunk/cod/ Fixing handling of structures without cell parameters in optimade.pl. |
2011511.cif 2011511.hkl |
| 269178 | 2021-09-17 | trunk/cod/tests/ Adding a test case showcasing the failure while processing structures without cell parameters in optimade.pl. |
2011511.cif 2011511.hkl |
| 269177 | 2021-09-17 | trunk/cod/tests/cgi-tests/ Resolving symlinks that point to other symlinks. |
2011511.cif 2011511.hkl |
| 269176 | 2021-09-17 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 269175 | 2021-09-17 | trunk/cod/ Small adjustments to footer styling. |
2011511.cif 2011511.hkl |
| 269174 | 2021-09-17 | trunk/cod/ Adjusting footer styling. |
2011511.cif 2011511.hkl |
| 269165 | 2021-09-16 | trunk/cod/ Fixing incorrect href for the license paragraph in index.php. |
2011511.cif 2011511.hkl |
| 269164 | 2021-09-16 | trunk/cod/ Adding CC0 license link to the footer of every page. |
2011511.cif 2011511.hkl |
| 269163 | 2021-09-16 | trunk/cod/ Fixing a quote in new.html. |
2011511.cif 2011511.hkl |
| 269162 | 2021-09-16 | trunk/cod/ Adding a news item concerning the new release of COD-derived Bruker search-match database. |
2011511.cif 2011511.hkl |
| 269125 | 2021-09-14 | trunk/cod/ Removing the acknowledgement for completed SOLSA project. |
2011511.cif 2011511.hkl |
| 269109 | 2021-09-13 | trunk/cod/ Updating the CHANGELOG. |
2011511.cif 2011511.hkl |
| 266617 | 2021-06-22 | trunk/cod/repository-hooks/ Changed: updated 'xml' dependency from revision 248157 to 261962. |
2011511.cif 2011511.hkl |
| 266615 | 2021-06-21 | trunk/cod/ Filtering out missing ADP messages in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 266614 | 2021-06-21 | trunk/cod/ Demoting warnings about missing ADPs to notices in validation pipeline. |
2011511.cif 2011511.hkl |
| 266613 | 2021-06-21 | trunk/cod/ Ignoring notices about missing year to check ADPs in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 265721 | 2021-06-03 | trunk/cod/ Replacing deprecated 'cif_cod_check' command line option '--check-temperature-factors' with '--check-adp-presence'. |
2011511.cif 2011511.hkl |
| 265718 | 2021-06-03 | trunk/cod/ Describing recent changes in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 265717 | 2021-06-03 | trunk/cod/ Updated cod-tools to v3.2.0 under lib/ and repository-hooks/. |
2011511.cif 2011511.hkl |
| 265182 | 2021-05-13 | trunk/ (antanas@echidna) Changed: added an extra "the" in a "cif-deposit.pl" error message. |
2011511.cif 2011511.hkl |
| 265181 | 2021-05-13 | trunk/cod/ (antanas@echidna) Changed: renamed test case 'upload.php_008' to 'upload.php_003'. |
2011511.cif 2011511.hkl |
| 265180 | 2021-05-13 | trunk/cod/ Switching svn:externals of lib/perl5/ to use Mysql_fp from ^/trunk. |
2011511.cif 2011511.hkl |
| 265179 | 2021-05-13 | trunk/cod/tests/ (antanas@echidna) Removed: an old test output file that is no longer relevant. |
2011511.cif 2011511.hkl |
| 265177 | 2021-05-13 | trunk/ (antanas@echidna) Changed: merged branch ^/branches/antanas-OpenBabel-error-handling back into ^/trunk. |
2011511.cif 2011511.hkl |
| 265172 | 2021-05-13 | trunk/cod/ (antanas@kurmis) Changed: removed useless whitespaces from several test cases. |
2011511.cif 2011511.hkl |
| 265171 | 2021-05-13 | trunk/cod/ (antanas@kurmis) Changed: removed useless whitespaces from the 'smiles-to-sql-insert' script. |
2011511.cif 2011511.hkl |
| 265170 | 2021-05-13 | trunk/cod/bin/ (antanas@kurmis) Changed: added the standard script header to the 'select-smiles-codid' script. |
2011511.cif 2011511.hkl |
| 265145 | 2021-05-12 | trunk/ (antanas@echidna) Changed: removed some code from the 'select-smiles-codid' script which is no longer reachable under the new database schema. |
2011511.cif 2011511.hkl |
| 265144 | 2021-05-12 | trunk/ (antanas@echidna) Changed: slightly beautified the code in the 'select-smiles-codid' script. |
2011511.cif 2011511.hkl |
| 264985 | 2021-05-06 | trunk/cod/ Using more precise progress step name in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 264981 | 2021-05-06 | trunk/cod/ Making the presence of atomic displacement parameters mandatory for all deposition types. |
2011511.cif 2011511.hkl |
| 264972 | 2021-05-05 | trunk/cod/ (antanas@echidna) Fixed: removed the '-M' option that was accidentally added to the 'at' program in the 'post-commit-update' script. |
2011511.cif 2011511.hkl |
| 264837 | 2021-05-04 | trunk/cod/tests/ Adjusting test output cgi-outputs/cif-deposit.pl_004.out to the real output of cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 264836 | 2021-05-04 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 264835 | 2021-05-04 | trunk/cod/ Correcting typo in cif-deposit.pl: 'abscent' -> 'absent'. |
2011511.cif 2011511.hkl |
| 264834 | 2021-05-04 | trunk/cod/ Requiring '_publ_author_name' in prepublication and personal communication depositions in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 264831 | 2021-05-04 | trunk/cod/ (antanas@echidna) Added: a test check file. |
2011511.cif 2011511.hkl |
| 264830 | 2021-05-04 | trunk/cod/repository-hooks/ (antanas@echidna) Changed: "can not" to "cannot" in the "post-commit-update" hook. |
2011511.cif 2011511.hkl |
| 264517 | 2021-04-26 | trunk/cod/ (antanas@echidna) Added: a check that skips several post-commit-update test if the Subversion client version is not compatible. |
2011511.cif 2011511.hkl |
| 264516 | 2021-04-26 | trunk/cod/ (antanas@echidna) Changed: added descriptions to two the test cases. |
2011511.cif 2011511.hkl |
| 264515 | 2021-04-26 | trunk/cod/tests/ (antanas@echidna) Added: two additional test cases for the post-commit-update hook. |
2011511.cif 2011511.hkl |
| 264512 | 2021-04-25 | trunk/cod/tests/ (antanas@echidna) Added: a check that skips optimade tests if the URL::Encode module is not available. |
2011511.cif 2011511.hkl |
| 264480 | 2021-04-23 | trunk/cod/ (antanas@echidna) Added: a check that skips a test if Text/CAPTCHA.php is not available. |
2011511.cif 2011511.hkl |
| 264429 | 2021-04-23 | trunk/ (antanas@kurmis) Changed: the version number to 0.8.2-dev. |
2011511.cif 2011511.hkl |
| 264427 | 2021-04-23 | trunk/ (antanas@kurmis) Changed: released version 0.8.1. |
2011511.cif 2011511.hkl |
| 264422 | 2021-04-22 | trunk/cod/ Adding php-zip to Debian-8 and Debian-10 dependency lists. |
2011511.cif 2011511.hkl |
| 264337 | 2021-04-20 | trunk/cod/ (antanas@echidna) Changed: replaced spaces with tabs in the comment that contains an example of the input file. |
2011511.cif 2011511.hkl |
| 264312 | 2021-04-19 | trunk/cod/ Adding proper error message reporting comparison of list properties to scalar values in optimade.pl. |
2011511.cif 2011511.hkl |
| 264288 | 2021-04-18 | trunk/cod/ (antanas@echidna) Changed: added the "utf8" option to the json_pp call in the optimade.pl.filter test script. |
2011511.cif 2011511.hkl |
| 264256 | 2021-04-16 | trunk/cod/tests/ Adding a test showcasing https://projects.ibt.lt/repositories/issues/1078. |
2011511.cif 2011511.hkl |
| 264255 | 2021-04-16 | trunk/cod/ (antanas@echidna) Changed: updated the test output. |
2011511.cif 2011511.hkl |
| 264254 | 2021-04-16 | trunk/ (antanas@kurmis) Changed: the default bibliography provider from PubChem to Crossref. |
2011511.cif 2011511.hkl |
| 264211 | 2021-04-15 | trunk/cod/ (antanas@kurmis) Fixed: a typo in an error message of the 'select-smiles-codid' script. |
2011511.cif 2011511.hkl |
| 264210 | 2021-04-15 | trunk/cod/ (antanas@kurmis) Changed: removed trailing whitespaces from several scripts. |
2011511.cif 2011511.hkl |
| 264209 | 2021-04-15 | trunk/ (antanas@kurmis) Changed: updated the 'smiles-scripts' external dependency under repository-hooks/ to r289. |
2011511.cif 2011511.hkl |
| 264184 | 2021-04-15 | trunk/cod/ Updating smiles-scripts to r286 under repository-hooks/. |
2011511.cif 2011511.hkl |
| 264171 | 2021-04-14 | trunk/ (antanas@kurmis) Changed: modified several scripts to explicitly import only the load_config_file() subroutine from the ConfigLoader module. |
2011511.cif 2011511.hkl |
| 264139 | 2021-04-14 | trunk/cod/ (antanas@kurmis) Fixed: changed curly braces to regular braces in the hash creation statement. |
2011511.cif 2011511.hkl |
| 264136 | 2021-04-14 | trunk/cod/tests/ Adjusting test outputs. |
2011511.cif 2011511.hkl |
| 264132 | 2021-04-14 | trunk/cod/ Allowing enumeration violation messages by cif_validate in CIF validation output. |
2011511.cif 2011511.hkl |
| 264101 | 2021-04-13 | trunk/cod/ (antanas@kurmis) Fixed: a typo in a comment. |
2011511.cif 2011511.hkl |
| 264099 | 2021-04-13 | trunk/cod/ (antanas@echidna) Changed: updated several hook script to apply slightly less strict checks of configuration file permissions and ownership. |
2011511.cif 2011511.hkl |
| 264098 | 2021-04-13 | trunk/cod/ (antanas@echidna) Changed: updated several hook scripts to explicitly load only the load_config_file() subroutine from the ConfigLoader module. |
2011511.cif 2011511.hkl |
| 264097 | 2021-04-13 | trunk/cod/ (antanas@echidna) Changed: updated the CHANGELOG. |
2011511.cif 2011511.hkl |
| 264096 | 2021-04-13 | trunk/cod/ (antanas@echidna) Changed: updated the ConfigLoader module from r184218 to r264062 and modified the hook scripts accordingly. |
2011511.cif 2011511.hkl |
| 264095 | 2021-04-13 | trunk/cod/ (antanas@echidna) Changed: reverted changes to the test directory that were accidentally introduced in r264094. |
2011511.cif 2011511.hkl |
| 264094 | 2021-04-13 | Mimicking the prefix CIF tree | 2011511.cif 2011511.hkl |
| 264062 | 2021-04-12 | trunk/cod/lib/ (antanas@kurmis) Changed: updated the ConfigLoader::load_config_file() subroutine to give greater precedence to parameters values provided in the configuration file rather than the default values from the configuration hash template. |
2011511.cif 2011511.hkl |
| 264061 | 2021-04-12 | trunk/cod/lib/ (antanas@kurmis) Changed: added an optional 'permission_type' parameter to the ConfigLoader::load_config_file() subroutine that enables to dynamically turn off some of the config file checks. |
2011511.cif 2011511.hkl |
| 263987 | 2021-04-08 | trunk/cod/ (antanas@echidna) Changed: reverted changes to the test directory that were accidentally introduced in r263986. |
2011511.cif 2011511.hkl |
| 263986 | 2021-04-08 | Mimicking the prefix CIF tree | 2011511.cif 2011511.hkl |
| 263952 | 2021-04-07 | trunk/cod/ Fixing logic in unversioned base URL handling in optimade.pl. |
2011511.cif 2011511.hkl |
| 263949 | 2021-04-07 | trunk/cod/ Allowing '@' symbols in usernames accepted by cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 263932 | 2021-04-07 | trunk/cod/ (antanas@echidna) Changed: replaced a bareword symbol filehandle with a variable in the ConfigLoader module. |
2011511.cif 2011511.hkl |
| 263532 | 2021-04-01 | trunk/cod/ (antanas@kurmis) Changed: added page numbers to the citation of Vaitkus2021. |
2011511.cif 2011511.hkl |
| 262973 | 2021-03-10 | trunk/ (antanas@kurmis) Changed: updated index.php to use divs instead of tables in the code fragments that contain server maintenance message templates. |
2011511.cif 2011511.hkl |
| 262460 | 2021-03-04 | cod/ (antanas@kurmis) Changed: updated the 'smiles-scripts' external dependency under repository-hooks/ to r257. |
2011511.cif 2011511.hkl |
| 262324 | 2021-03-01 | trunk/cod/ Adding space between news text and "Read more" link in news items in index.php. |
2011511.cif 2011511.hkl |
| 262323 | 2021-03-01 | trunk/cod/ Adding a news item concerning the new release of COD-derived PANalytical search-match database. |
2011511.cif 2011511.hkl |
| 262274 | 2021-02-26 | trunk/ (antanas@echidna) Changed: the version number to 0.8.1-dev. |
2011511.cif 2011511.hkl |
| 262272 | 2021-02-26 | trunk/ (antanas@echidna) Changed: released version 0.8.0. |
2011511.cif 2011511.hkl |
| 262271 | 2021-02-26 | trunk/ (antanas@echidna) Changed: updated the CHANGELOG. |
2011511.cif 2011511.hkl |
| 262270 | 2021-02-26 | trunk/cod/ (antanas@echidna) Changed: slightly rewrote the 'post-commit-smiles-update' hook for readability. |
2011511.cif 2011511.hkl |
| 262269 | 2021-02-26 | trunk/cod/repository-hooks/ (antanas@echidna) Changed: rewrote one of the error messages in the 'post-commit-sql-update' hook. |
2011511.cif 2011511.hkl |
| 262235 | 2021-02-25 | trunk/ (antanas@echidna) Changed: the version number to 0.8.0-dev. |
2011511.cif 2011511.hkl |
| 262234 | 2021-02-25 | trunk/ (antanas@echidna) Changed: added explicit values for the upload_max_filesize and post_max_size PHP parameters in the .htaccess file. |
2011511.cif 2011511.hkl |
| 262233 | 2021-02-25 | trunk/cod/ (antanas@echidna) Changed: updated the Makelocal-test makefile to sort test cases. |
2011511.cif 2011511.hkl |
| 262232 | 2021-02-25 | trunk/cod/ (antanas@echidna) Changed: started sorting the output of 'find' in some tests to ensure identical results on different machines. |
2011511.cif 2011511.hkl |
| 262231 | 2021-02-25 | trunk/cod/ (antanas@echidna) Changed: added severa more test filters. |
2011511.cif 2011511.hkl |
| 262225 | 2021-02-25 | trunk/ (antanas@echidna) Changed: updated the Mysql_fp::make_sql_create_smiles_tbl() subroutine to generate a create table statement that imposes the same constraints as the ones provided in the stand-alone schema file ('sql/db/smiles-create.sql'). |
2011511.cif 2011511.hkl |
| 262202 | 2021-02-25 | trunk/cod/ (antanas@echidna) Changed: slightly reorganised the tests. |
2011511.cif 2011511.hkl |
| 262201 | 2021-02-25 | trunk/ (antanas@echidna) Changed: added several more tests for the post-commit hook. |
2011511.cif 2011511.hkl |
| 262198 | 2021-02-24 | trunk/ (antanas@echidna) Changed: implemented proper reporting of faulty input lines in the 'smiles-to-sql-insert' script. |
2011511.cif 2011511.hkl |
| 262197 | 2021-02-24 | trunk/cod/ (antanas@echidna) Changed: slightly cleaned up the 'wikidata2wikipedia' script. |
2011511.cif 2011511.hkl |
| 262196 | 2021-02-24 | trunk/ (antanas@echidna) Fixed: started using 'printf' instead of 'echo' in the error reporting logic of the 'post-commit' hook to avoid interpreting certain sequences as special characters (i.e "\n" as a new line). |
2011511.cif 2011511.hkl |
| 262091 | 2021-02-19 | trunk/cod/ (antanas@kurmis) Added: bibliographic information of Vaitkus et al., 2021. |
2011511.cif 2011511.hkl |
| 262043 | 2021-02-17 | trunk/ (antanas@kurmis) Fixed: corrected a typo in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 262042 | 2021-02-17 | trunk/ (antanas@echidna) Changed: declared the fingerprints.fp* columns as not null and updated the Mysql_fp::make_sql_create_fp_tbl() subroutine accordingly. Changes in the test output files are due to formatting differences (not null columns are displayed in slightly smaller columns). |
2011511.cif 2011511.hkl |
| 262041 | 2021-02-17 | trunk/cod/ Fixing a typo in message printed by ConfigLoader. |
2011511.cif 2011511.hkl |
| 262040 | 2021-02-17 | trunk/cod/ Updating crossref-xml2mrk to r773 under bin/. |
2011511.cif 2011511.hkl |
| 262039 | 2021-02-17 | trunk/cod/ As v0.7.0 is out, preparing for the next release. |
2011511.cif 2011511.hkl |
| 262032 | 2021-02-17 | trunk/cod/ Releasing v0.7.0. |
2011511.cif 2011511.hkl |
| 262030 | 2021-02-17 | trunk/cod/tests/ Adjusting the output cgi-outputs/optimade.pl_009.out after the changes in the description XML. |
2011511.cif 2011511.hkl |
| 261964 | 2021-02-15 | trunk/ (antanas@echidna) Changed: updated the CHANGELOG. |
2011511.cif 2011511.hkl |
| 261962 | 2021-02-15 | trunk/cod/xml/documents/ (antanas@echidna) Changed: updated the 'database-description_v1.1.xml' symlink to point to the 'database-description_v1.1.1.xml' file. |
2011511.cif 2011511.hkl |
| 261960 | 2021-02-15 | trunk/cod/xml/documents/ (antanas@echidna) Changed: released version 1.1.1 of the COD database description. |
2011511.cif 2011511.hkl |
| 261860 | 2021-02-09 | trunk/cod/tests/ (antanas@echidna) Added: a test input file. |
2011511.cif 2011511.hkl |
| 261360 | 2021-02-02 | trunk/cod/ (antanas@echidna) Added: several tests for the 'smiles-to-sql-insert' script. |
2011511.cif 2011511.hkl |
| 261308 | 2021-01-29 | trunk/cod/xml/documents/ (antanas@echidna) Fixed: updated the description of the 'status' field to reflect that 'none' is not one of the permitted values. |
2011511.cif 2011511.hkl |
| 261307 | 2021-01-29 | trunk/ (antanas@echidna) Changed: updated the external dependencies under repository-hooks/lib/perl/ to use a fixed revision. |
2011511.cif 2011511.hkl |
| 261306 | 2021-01-29 | trunk/ (antanas@echidna) Changed: updated the 'smiles-scripts' external dependency in the 'repository-hooks' directory from r198 to r254. |
2011511.cif 2011511.hkl |
| 261296 | 2021-01-28 | trunk/cod/ Fixing incorrect year in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 261268 | 2021-01-27 | trunk/ (antanas@echidna) Changed: added subruotine descriptions in the 'smiles-to-sql-insert' script. |
2011511.cif 2011511.hkl |
| 261267 | 2021-01-27 | trunk/cod/ Adding year 2021 to browse.html. |
2011511.cif 2011511.hkl |
| 261264 | 2021-01-27 | trunk/cod/tests/cases/ (antanas@echidna) Changed: updated the description of one of the tests. |
2011511.cif 2011511.hkl |
| 261263 | 2021-01-27 | trunk/cod/ Simplifying syntax in optimade.pl. |
2011511.cif 2011511.hkl |
| 261231 | 2021-01-26 | trunk/cod/ (antanas@echidna) Changed: updated the 'smiles-to-sql-insert' script to convert hex number to decimal numbers. |
2011511.cif 2011511.hkl |
| 261226 | 2021-01-26 | trunk/ (antanas@echidna) Changed: made some final refactoring changes to the Mysql_fp.pm module for now. |
2011511.cif 2011511.hkl |
| 261225 | 2021-01-26 | trunk/cod/ Removing hard-coded COD CIF URL template from optimade.pl. |
2011511.cif 2011511.hkl |
| 261224 | 2021-01-26 | trunk/ (antanas@echidna) Changed: added the standard comment header and set the svn:keywords propery on the Mysql_fp.p module. |
2011511.cif 2011511.hkl |
| 261223 | 2021-01-26 | trunk/cod/lib/perl5/ (antanas@echidna) Changed: refactored the Mysql_fp module some more. |
2011511.cif 2011511.hkl |
| 261222 | 2021-01-26 | trunk/cod/lib/perl5/ (antanas@echidna) Changed: slightly refactored the Mysql_fp.pm module. |
2011511.cif 2011511.hkl |
| 261221 | 2021-01-26 | trunk/ (antanas@echidna) Changed: replaced spaces with tabs in the comments of the 'smiles-insert' script that describe the input format. |
2011511.cif 2011511.hkl |
| 261220 | 2021-01-26 | trunk/cod/bin/ (antanas@echidna) Changed: added the standard comment header and set the svn:keywords property on the 'smiles-insert' and 'fp-insert' scripts. |
2011511.cif 2011511.hkl |
| 261219 | 2021-01-26 | trunk/ (antanas@echidna) Changed: updated the CHANGELOG. |
2011511.cif 2011511.hkl |
| 261200 | 2021-01-25 | trunk/cod/bin/ (antanas@echidna) Changed: refactored the 'fp-insert' script. |
2011511.cif 2011511.hkl |
| 261199 | 2021-01-25 | trunk/cod/ (antanas@echidna) Changed: updated the CHANGELOG. |
2011511.cif 2011511.hkl |
| 261198 | 2021-01-25 | trunk/cod/bin/ (antanas@echidna) Changed: added the initial version of the 'smiles-to-sql-insert' script. |
2011511.cif 2011511.hkl |
| 261197 | 2021-01-25 | trunk/cod/tests/ Cleaning up the rest of the remaining bin-tests/post-commit-dic2ikiwiki-update tests and their dependencies. |
2011511.cif 2011511.hkl |
| 261195 | 2021-01-25 | trunk/cod/tests/ Converting bin-tests/post-commit-dic2ikiwiki-update_007.opt to cases/post-commit-dic2ikiwiki-update_007.sh. |
2011511.cif 2011511.hkl |
| 261194 | 2021-01-25 | trunk/cod/tests/ Converting bin-tests/post-commit-dic2ikiwiki-update_006.opt to cases/post-commit-dic2ikiwiki-update_006.sh. |
2011511.cif 2011511.hkl |
| 261193 | 2021-01-25 | trunk/cod/tests/ Converting bin-tests/post-commit-dic2ikiwiki-update_005.opt to cases/post-commit-dic2ikiwiki-update_005.sh. |
2011511.cif 2011511.hkl |
| 261192 | 2021-01-25 | trunk/cod/tests/ Converting bin-tests/post-commit-dic2ikiwiki-update_004.opt to cases/post-commit-dic2ikiwiki-update_004.sh. |
2011511.cif 2011511.hkl |
| 261191 | 2021-01-25 | trunk/cod/tests/ Converting bin-tests/post-commit-dic2ikiwiki-update_003.opt to cases/post-commit-dic2ikiwiki-update_003.sh. |
2011511.cif 2011511.hkl |
| 261189 | 2021-01-25 | trunk/cod/tests/ Converting bin-tests/post-commit-dic2ikiwiki-update_002.opt to cases/post-commit-dic2ikiwiki-update_002.sh. |
2011511.cif 2011511.hkl |
| 261188 | 2021-01-25 | trunk/cod/tests/ Reworking test case bin-tests/post-commit-dic2ikiwiki-update_001.* to cases/post-commit-dic2ikiwiki-update_001.sh in order to simplify the testing procedure for post-commit-dic2ikiwiki-update. |
2011511.cif 2011511.hkl |
| 261112 | 2021-01-21 | trunk/ (antanas@echidna) Changed: removed trailing spaces from 'fp-insert'. |
2011511.cif 2011511.hkl |
| 261111 | 2021-01-21 | trunk/ (antanas@echidna) Changed: renamed several variables in Mysql_fp.pm to avoid reusing variable names. |
2011511.cif 2011511.hkl |
| 261110 | 2021-01-21 | trunk/ (antanas@echidna) Changed: replaced indirect object calls with direct object calls in Mysql_fp.pm. |
2011511.cif 2011511.hkl |
| 261109 | 2021-01-21 | trunk/cod/lib/perl5/ (antanas@echidna) Changed: removed trailing whitspaces in Mysql_fp.pm. |
2011511.cif 2011511.hkl |
| 261108 | 2021-01-21 | cod/ (antanas@echidna) Changed: replaced a bareword filehandle with a lexical variable in the 'post-commit-sql-update' hook. |
2011511.cif 2011511.hkl |
| 261107 | 2021-01-21 | trunk/cod/repository-hooks/ (antanas@echidna) Changed: updated the script description to include database privileges required to execute the hook. |
2011511.cif 2011511.hkl |
| 261106 | 2021-01-21 | trunk/cod/ (antanas@echidna) Changed: replaced several hardcoded table names with variables in the 'post-commit-sql-update' hook to keep things consistent. |
2011511.cif 2011511.hkl |
| 261105 | 2021-01-21 | trunk/cod/repository-hooks/ (antanas@echidna) Changed: commented out an unused variable. |
2011511.cif 2011511.hkl |
| 261104 | 2021-01-21 | cod/ (antanas@echidna) Changed: added the '-r' option to the read statement of the 'post-commit' hook to avoid mangling backslashes in error messages. |
2011511.cif 2011511.hkl |
| 261103 | 2021-01-21 | trunk/cod/ (antanas@echidna) Changed: added double quotes around several more variables in the 'post-commit' hook as recommended by the 'shellcheck' utility. |
2011511.cif 2011511.hkl |
| 261102 | 2021-01-21 | trunk/cod/ (antanas@echidna) Changed: updated the post-commit hook description by copying it from new Subversion repositories created under Debian 10 using the standard Subversion installation (Subversion version 1.10.4 (r1850624)). The script was also modified to explicitly pass two of the three available parameters instead of relying on the $* variable. |
2011511.cif 2011511.hkl |
| 261101 | 2021-01-21 | trunk/ (antanas@echidna) Changed: updated the 'post-commit-smiles-script' to skip revisions in which no changes to the 'smi/allcod.smi' file were applied. |
2011511.cif 2011511.hkl |
| 261100 | 2021-01-21 | trunk/cod/ Renaming variable $smile_ids in post-commit-smiles-update as noun 'SMILES' is both singular and plural. |
2011511.cif 2011511.hkl |
| 261088 | 2021-01-20 | trunk/ (antanas@echidna) Fixed: added the actual changes to the 'post-commit-smiles-update' hook that were described in r261087. |
2011511.cif 2011511.hkl |
| 261087 | 2021-01-20 | trunk/ (antanas@echidna) Changed: added several warning messages related to unexpected database contents. |
2011511.cif 2011511.hkl |
| 261086 | 2021-01-20 | trunk/cod/tests/ (antanas@echidna) Fixed: corrected one of the test cases. |
2011511.cif 2011511.hkl |
| 261050 | 2021-01-19 | trunk/ (antanas@echidna) Fixed: updated the 'post-commit-smiles-update' hook file to properly handle insertions and deletions at the end of the `svn diff` output that are preceded by an update action. |
2011511.cif 2011511.hkl |
| 261049 | 2021-01-19 | trunk/cod/ (antanas@echidna) Added: a test input file. |
2011511.cif 2011511.hkl |
| 261047 | 2021-01-19 | trunk/cod/tests/ (antanas@echidna) Removed: symlink to one of the test data files in preparation to replace it with an actual file. |
2011511.cif 2011511.hkl |
| 261046 | 2021-01-19 | trunk/cod/tests/ (antanas@echidna) Removed: the 'post-commit-smiles-update_004' test case in preparation to replace it with a different one. The 'post-commit-smiles-update_004' test case is fully replaced by test cases 'post-commit-smiles-update_019' and 'post-commit-smiles-update_020'. |
2011511.cif 2011511.hkl |
| 261045 | 2021-01-19 | trunk/cod/tests/cases/ (antanas@echidna) Changed: slightly updated the comments of several tests. |
2011511.cif 2011511.hkl |
| 261041 | 2021-01-19 | trunk/cod/tests/ (antanas@echidna) Changed: added several more tests for the 'post-commit-smiles-update' hook. |
2011511.cif 2011511.hkl |
| 261039 | 2021-01-18 | trunk/cod/ (antanas@echidna) Changed: removed an updated comment. |
2011511.cif 2011511.hkl |
| 261038 | 2021-01-18 | trunk/cod/ (antanas@echidna) Changed: added a list of required database privileges in the description of the 'post-commit-smiles-update' hook. |
2011511.cif 2011511.hkl |
| 261037 | 2021-01-18 | trunk/ (antanas@echidna) Changed: updated the 'post-commit-smiles-update' script to always try to upsert entries whenever possible. Warning messages about unexpected situations are currently not implemented. |
2011511.cif 2011511.hkl |
| 261036 | 2021-01-18 | trunk/cod/ Unifying the usage of semicolons (';') in the code of post-commit-smiles-update. |
2011511.cif 2011511.hkl |
| 261035 | 2021-01-18 | trunk/cod/ (antanas@echidna) Changed: updated one error message in the 'post-commit-update' script to use the error message syntax employed by other COD software. The script also contains multiple other messages that should be changed, but I will raise a separate issue for that. |
2011511.cif 2011511.hkl |
| 261034 | 2021-01-18 | trunk/cod/ (antanas@echidna) Changed: replaced '\d' with '[0-9]' in regular expressions in multiple hook scripts. |
2011511.cif 2011511.hkl |
| 261033 | 2021-01-18 | trunk/cod/ (antanas@echidna) Changed: removed statements that open and close the configuration file without ever reading it from several hooks. |
2011511.cif 2011511.hkl |
| 261032 | 2021-01-18 | trunk/ (antanas@echidna) Changed: replaced '\d' with '[0-9]' in the 'pre-commit-smiles-check' hook. |
2011511.cif 2011511.hkl |
| 261031 | 2021-01-18 | trunk/cod/ (antanas@echidna) Changed: removed the dependency list for Debian-6.0.6 since the OS has reached its end of life. |
2011511.cif 2011511.hkl |
| 261030 | 2021-01-18 | trunk/cod/ (antanas@echidna) Changed: updated the 'post-commit-smiles-update_009.sh' test case since it could no longer test the situation it was designed for due to changed database constraints. |
2011511.cif 2011511.hkl |
| 261029 | 2021-01-18 | trunk/cod/tests/cases/ (antanas@echidna) Changed: deleted the 'post-commit-smiles-update_009.sh' test symlink before replacing it with a file. |
2011511.cif 2011511.hkl |
| 261028 | 2021-01-18 | trunk/cod/repository-hooks/ (antanas@echidna) Changed: removed part of the post-commit-smiles-updated hook that would never be executed under the new database constraints. |
2011511.cif 2011511.hkl |
| 261023 | 2021-01-17 | trunk/cod/ (antanas@echidna) Changed: updated the Makelocal-test file to order tests. |
2011511.cif 2011511.hkl |
| 261022 | 2021-01-17 | trunk/ (antanas@echidna) Changed: declared the `fingerprints`.`smiles_id` column as unique and not null. |
2011511.cif 2011511.hkl |
| 261014 | 2021-01-17 | trunk/ (antanas@echidna) Changed: updated the 'post-commit-smiles-update' to sort the output of the 'svn diff' in the pipe to avoid certain data anomalies that arise even if the allcod.smi file is properly sorted. |
2011511.cif 2011511.hkl |
| 261013 | 2021-01-17 | trunk/ (antanas@echidna) Changed: slightly cleaned up the code in the 'post-commit-smiles-update' script. |
2011511.cif 2011511.hkl |
| 260992 | 2021-01-16 | trunk/cod/ (antanas@echidna) Added: several more tests for the 'post-commit-smiles-update' hook. |
2011511.cif 2011511.hkl |
| 260952 | 2021-01-14 | trunk/cod/ (antanas@kurmis) Changed: reverted changes to the test directory that were accidentally introduced in r260922. |
2011511.cif 2011511.hkl |
| 260951 | 2021-01-14 | trunk/cod/tests/ (antanas@echidna) Added: several tests for the 'post-commit-smiles-update' hook that check the handling of changes that appear at the start of the `svn diff` output. |
2011511.cif 2011511.hkl |
| 260950 | 2021-01-14 | trunk/cod/tests/ (antanas@echidna) Changed: updated one of the tests to replace the existing SMILES string with a more different one so the change would also be reflected in the `figerprints` table. |
2011511.cif 2011511.hkl |
| 260949 | 2021-01-14 | trunk/cod/tests/ (antanas@echidna) Changed: added a few comments to the 'post-commit-smiles-update' hook test cases. |
2011511.cif 2011511.hkl |
| 260922 | 2021-01-13 | Mimicking the prefix CIF tree | 2011511.cif 2011511.hkl |
| 260921 | 2021-01-13 | trunk/cod/ (antanas@kurmis) Fixed: updated the script to no longer convert fingerprint ids from int to oct in the update branch. |
2011511.cif 2011511.hkl |
| 260920 | 2021-01-13 | trunk/cod/ (antanas@kurmis) Fixed: updated the 'post-commit-smiles-update' to properly handle changed entries. The issue was most likely introduced by me in the refactoring branch. |
2011511.cif 2011511.hkl |
| 260919 | 2021-01-13 | trunk/ (antanas@kurmis) Fixed: corrected the assigment of the parsed entry id in the 'post-commit-smiles-update' hook. |
2011511.cif 2011511.hkl |
| 260917 | 2021-01-13 | trunk/ (antanas@kurmis) Changed: reintegrated branch ^/branches/antanas-post-commit-smiles-update-refactoring back into ^/trunk/cod. |
2011511.cif 2011511.hkl |
| 260914 | 2021-01-13 | trunk/cod/ (antanas@kurmis) Changed: added an additional check for the config file existence. |
2011511.cif 2011511.hkl |
| 260913 | 2021-01-13 | trunk/cod/ (antanas@kurmis) Changed: declared the $inp variable as local in the 'post-commit-smiles-update' script. |
2011511.cif 2011511.hkl |
| 260912 | 2021-01-13 | trunk/cod/ Converting two-parameter open() call to three-parameter open() call in post-commit-smiles-update. |
2011511.cif 2011511.hkl |
| 260911 | 2021-01-13 | trunk/cod/ Removing unneccesary opening and closing of configuration file in post-commit-smiles-update. |
2011511.cif 2011511.hkl |
| 260904 | 2021-01-12 | trunk/cod/ (antanas@kurmis) Fixed: a minor typo. |
2011511.cif 2011511.hkl |
| 260903 | 2021-01-12 | trunk/cod/ Putting the local scripts directory to the front of the PATH to avoid accidentally using wrong scripts in post-commit-dic2ikiwiki-update in case there is a system-wide installation of cod-tools. |
2011511.cif 2011511.hkl |
| 260902 | 2021-01-12 | trunk/cod/ Fixing the determination of PATH and PERL5LIB in post-commit-dic2ikiwiki-update to support calls via relative paths. |
2011511.cif 2011511.hkl |
| 260536 | 2021-01-05 | trunk/cod/tests/ Updating test outputs as 'immutable_id' OPTIMADE properties are now gone. |
2011511.cif 2011511.hkl |
| 260535 | 2021-01-05 | trunk/cod/ Ceasing to provide immutable IDs in OPTIMADE output as they are not yet supported. |
2011511.cif 2011511.hkl |
| 260534 | 2021-01-05 | trunk/cod/tests/ Updating tests for optimade.pl. |
2011511.cif 2011511.hkl |
| 260533 | 2021-01-05 | trunk/cod/ Providing correct self URLs in OPTIMADE. |
2011511.cif 2011511.hkl |
| 260532 | 2021-01-05 | trunk/cod/ Fixing issue with doubled slashes in OPTIMADE URLs. |
2011511.cif 2011511.hkl |
| 260531 | 2021-01-05 | trunk/cod/ Moving base URL to separate variable in optimade.pl. |
2011511.cif 2011511.hkl |
| 259761 | 2020-12-10 | trunk/cod/ Fixing incorrect message about unsupported 'HAS ONLY' queries for optimade.pl. |
2011511.cif 2011511.hkl |
| 259658 | 2020-12-08 | trunk/cod/repository-hooks/ (coder@cod2.ibt.lt) Updating the 'pre-commit-sql-update' code so that it *actually* reads the config file; before that, the currently supplied module would skip all defined values and essentially ignore the provided config. The policy of config processing should be discussed and unified for all config reader modules (S.G.). |
2011511.cif 2011511.hkl |
| 258730 | 2020-11-04 | trunk/cod/ Reporting unsupported 'elements HAS ONLY' queries in optimade.pl. |
2011511.cif 2011511.hkl |
| 258527 | 2020-10-21 | trunk/cod/xml/documents/ (antanas@kurmis) Changed: replaced the term "standard deviation" with the recommended term "standard uncertainty". |
2011511.cif 2011511.hkl |
| 258526 | 2020-10-21 | trunk/cod/xml/documents/ (antanas@kurmis) Fixed: a typo in the 'Explanation' field of the 'svnrevision' column ("nee"->"new"). |
2011511.cif 2011511.hkl |
| 258525 | 2020-10-21 | trunk/cod/xml/documents/database-description/ (antanas@kurmis) Added: the 'database-description_v1.1.1-dev.xml' file. |
2011511.cif 2011511.hkl |
| 258462 | 2020-10-19 | trunk/cod/ Simplifying code of post-commit-smiles-update a bit. |
2011511.cif 2011511.hkl |
| 258461 | 2020-10-19 | trunk/cod/repository-hooks/ Adding example configuration file for post-commit-smiles-update. |
2011511.cif 2011511.hkl |
| 258460 | 2020-10-19 | trunk/cod/repository-hooks/ Fixing the description for post-commit-smiles-update. |
2011511.cif 2011511.hkl |
| 258459 | 2020-10-19 | trunk/cod/ Running post-commit-smiles-update in post-commit. |
2011511.cif 2011511.hkl |
| 258380 | 2020-10-14 | trunk/cod/ Switching the version suffix from '-pre' (introduced accidentally) to '-dev'. |
2011511.cif 2011511.hkl |
| 258379 | 2020-10-14 | trunk/cod/tests/ Adding a test with more than one fingerprint entry for the same SMILES descriptor. |
2011511.cif 2011511.hkl |
| 258378 | 2020-10-14 | trunk/cod/ Removing reference to cif_cod_check from error messages generated by post-commit-validation-update as cif_cod_check is not the only external script to cause errors. |
2011511.cif 2011511.hkl |
| 258377 | 2020-10-14 | trunk/cod/tests/ Filtering variable content from the output of post-commit-smiles-update. |
2011511.cif 2011511.hkl |
| 258376 | 2020-10-14 | trunk/cod/ Cleaning up post-commit-smiles-update. |
2011511.cif 2011511.hkl |
| 258375 | 2020-10-14 | trunk/cod/ Fixing deletion of fingerprints in post-commit-smiles-update. |
2011511.cif 2011511.hkl |
| 258374 | 2020-10-14 | trunk/cod/tests/ Adding two test cases for deletion of data via post-commit-smiles-update. One of them fails as of yet. |
2011511.cif 2011511.hkl |
| 258373 | 2020-10-14 | trunk/cod/ Fixing an issue with fingerprint update in post-commit-smiles-update. |
2011511.cif 2011511.hkl |
| 258372 | 2020-10-14 | trunk/cod/ Fixing problems with updating records in post-commit-smiles-update. |
2011511.cif 2011511.hkl |
| 258371 | 2020-10-14 | trunk/cod/tests/ Making cases/post-commit-smiles-update_003.sh more adaptable. |
2011511.cif 2011511.hkl |
| 258370 | 2020-10-14 | trunk/cod/tests/ Adding yet another test case for post-commit-smiles-update. |
2011511.cif 2011511.hkl |
| 258369 | 2020-10-14 | trunk/cod/tests/ Moving post-commit-smiles-update files from bin-tests/ to cases/. |
2011511.cif 2011511.hkl |
| 258368 | 2020-10-14 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 258367 | 2020-10-14 | trunk/cod/ Attaching same-repository external to place a copy of ConfigLoader.pm under repository-hooks/lib/perl5/. This results in the usage of newer version of ConfigLoader.pm for repository hooks. Adapting hooks to the changes. |
2011511.cif 2011511.hkl |
| 258366 | 2020-10-14 | trunk/cod/repository-hooks/ Removing ConfigLoader.pm prior to attaching it using svn:externals. |
2011511.cif 2011511.hkl |
| 258365 | 2020-10-14 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 258364 | 2020-10-14 | trunk/cod/ Attaching same-repository external to place a copy of Mysql_fp.pm under repository-hooks/lib/perl5/. |
2011511.cif 2011511.hkl |
| 258335 | 2020-10-13 | trunk/cod/tests/ Adding a test case for deleted entries in post-commit-smiles-update. |
2011511.cif 2011511.hkl |
| 258334 | 2020-10-13 | trunk/cod/ Fixing detection of nonexistent database entries in post-commit-smiles-update. |
2011511.cif 2011511.hkl |
| 258333 | 2020-10-13 | trunk/cod/tests/ Adding yet another test case for post-commit-smiles-update. |
2011511.cif 2011511.hkl |
| 258332 | 2020-10-13 | trunk/cod/tests/ Adding a test for post-commit-smiles-update. |
2011511.cif 2011511.hkl |
| 258331 | 2020-10-13 | trunk/cod/ Extracting SMILES fingerprints in post-commit-smiles-update. |
2011511.cif 2011511.hkl |
| 258330 | 2020-10-13 | trunk/cod/ Fixing problems in post-commit-smiles-update. |
2011511.cif 2011511.hkl |
| 258328 | 2020-10-13 | trunk/cod/ Starting to develop a post-commit Subversion hook to update SMILES database tables. |
2011511.cif 2011511.hkl |
| 258227 | 2020-10-07 | trunk/cod/ Not showing "Read more" link in the news section of index.php if no link is associated with a news item. |
2011511.cif 2011511.hkl |
| 256726 | 2020-09-24 | trunk/cod/ As v0.6.7 is out, preparing for the next release. |
2011511.cif 2011511.hkl |
| 256724 | 2020-09-24 | trunk/cod/ Releasing v0.6.7. |
2011511.cif 2011511.hkl |
| 256723 | 2020-09-24 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 256722 | 2020-09-24 | trunk/cod/ Supporting structure feature 'implicit_atoms' in OPTIMADE. |
2011511.cif 2011511.hkl |
| 256717 | 2020-09-24 | trunk/cod/ Catching and representing warnings in OPTIMADE. |
2011511.cif 2011511.hkl |
| 256716 | 2020-09-24 | trunk/cod/ Reporting assumed assembly probabilities in OPTIMADE. |
2011511.cif 2011511.hkl |
| 256715 | 2020-09-24 | trunk/cod/ Adding 'assemblies'.'group_probabilities' to OPTIMADE. |
2011511.cif 2011511.hkl |
| 256714 | 2020-09-24 | trunk/cod/ Fixing problems with occupancies having standard uncertainties in OPTIMADE. |
2011511.cif 2011511.hkl |
| 256713 | 2020-09-24 | trunk/cod/ Fixing assemblies in OPTIMADE. |
2011511.cif 2011511.hkl |
| 256671 | 2020-09-23 | trunk/cod/ Fixing assembly representation in OPTIMADE. |
2011511.cif 2011511.hkl |
| 256670 | 2020-09-23 | trunk/cod/ Supporting assemblies in OPTIMADE. |
2011511.cif 2011511.hkl |
| 256669 | 2020-09-23 | trunk/cod/ Implementing 'structure_features' value 'disorder' in OPTIMADE. |
2011511.cif 2011511.hkl |
| 256668 | 2020-09-23 | trunk/cod/ Supporting vacancies in OPTIMADE. |
2011511.cif 2011511.hkl |
| 256667 | 2020-09-23 | trunk/cod/ Calculating and adding structure features only upon request in OPTIMADE. |
2011511.cif 2011511.hkl |
| 256666 | 2020-09-23 | trunk/cod/ Implementing 'structure_features' value 'site_attachments' in OPTIMADE. |
2011511.cif 2011511.hkl |
| 256665 | 2020-09-23 | trunk/cod/ Converting 'species'.'attached' to number in OPTIMADE. |
2011511.cif 2011511.hkl |
| 256664 | 2020-09-23 | trunk/cod/ Adding 'species'.'attached' and 'species'.'nattached' if attached hydrogen atoms are present in OPTIMADE. |
2011511.cif 2011511.hkl |
| 256663 | 2020-09-23 | trunk/cod/ Adding 'species'.'concentration' to output of OPTIMADE. |
2011511.cif 2011511.hkl |
| 256662 | 2020-09-23 | trunk/cod/ Handling 'chemical_formula_descriptive' as an alias of 'chemical_formula_hill' in OPTIMADE. |
2011511.cif 2011511.hkl |
| 256661 | 2020-09-23 | trunk/cod/ Adding 'chemical_formula_descriptive' property to the output of OPTIMADE. |
2011511.cif 2011511.hkl |
| 256660 | 2020-09-23 | trunk/cod/ Implementing OPTIMADE /links endpoint (empty for now). |
2011511.cif 2011511.hkl |
| 256659 | 2020-09-23 | trunk/cod/ Implementing queries on 'nperiodic_dimensions' in optimade.pl. |
2011511.cif 2011511.hkl |
| 256657 | 2020-09-23 | trunk/cod/ Adding 'nperiodic_dimensions' to the output of optimade.pl. |
2011511.cif 2011511.hkl |
| 256656 | 2020-09-23 | trunk/cod/ Adding 'elements_ratios' to the output of optimade.pl. |
2011511.cif 2011511.hkl |
| 256655 | 2020-09-23 | trunk/cod/ Adding empty property 'structure_features' to optimade.pl. |
2011511.cif 2011511.hkl |
| 256652 | 2020-09-23 | trunk/cod/ Adding a pair more missing property types to optimade.pl. |
2011511.cif 2011511.hkl |
| 256529 | 2020-09-18 | trunk/cod/ Supporting <value> <operator> <property> queries in OPTIMADE. |
2011511.cif 2011511.hkl |
| 256528 | 2020-09-18 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 256527 | 2020-09-18 | trunk/cod/ Adding missing property 'type' for endpoint 'structures' for OPTIMADE. |
2011511.cif 2011511.hkl |
| 256526 | 2020-09-18 | trunk/cod/ Adding missing properties and their types for OPTIMADE. |
2011511.cif 2011511.hkl |
| 256525 | 2020-09-18 | trunk/cod/ Implementing handling of 'dimension_types' structure property for OPTIMADE. |
2011511.cif 2011511.hkl |
| 256524 | 2020-09-18 | trunk/cod/ Adding data types for the remaining properties in optimade.pl. |
2011511.cif 2011511.hkl |
| 256523 | 2020-09-18 | trunk/cod/ Adding data types for provider-specific properties for the OPTIMADE entry listing endpoint. |
2011511.cif 2011511.hkl |
| 256407 | 2020-09-14 | trunk/cod/tests/ Adjusting test output php-outputs/edit-txt-cif.php_006.out. |
2011511.cif 2011511.hkl |
| 256406 | 2020-09-14 | trunk/cod/ Updated cod-tools to v3.1.0 under lib/ and repository-hooks/. |
2011511.cif 2011511.hkl |
| 256399 | 2020-09-14 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 256398 | 2020-09-14 | trunk/cod/ Switching some of the links to HTTPS in new.html. |
2011511.cif 2011511.hkl |
| 256397 | 2020-09-14 | trunk/cod/ Unifying the styles in new.html. |
2011511.cif 2011511.hkl |
| 256396 | 2020-09-14 | trunk/cod/ Announcing new Rigaku software release. |
2011511.cif 2011511.hkl |
| 256345 | 2020-09-11 | trunk/cod/ Switching to cod-tools release branch v3.1.0 under lib/ and repository-hooks/. |
2011511.cif 2011511.hkl |
| 256344 | 2020-09-11 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 256343 | 2020-09-11 | trunk/cod/ Updating {crossref,pubmed}-xml2mrk to r765 under bin/. |
2011511.cif 2011511.hkl |
| 255604 | 2020-08-24 | trunk/cod/ As v0.6.6 is out, preparing for the next release. |
2011511.cif 2011511.hkl |
| 255602 | 2020-08-24 | trunk/cod/ Releasing v0.6.6. |
2011511.cif 2011511.hkl |
| 255601 | 2020-08-24 | trunk/cod/ Fixing pre-commit-smiles-check failure to handle multiple changed files. |
2011511.cif 2011511.hkl |
| 255450 | 2020-08-19 | trunk/cod/ Adding a test for incorrect DOI detection. |
2011511.cif 2011511.hkl |
| 255448 | 2020-08-19 | trunk/cod/ Updating pubmed-get-biblio to r755 under bin/. |
2011511.cif 2011511.hkl |
| 255447 | 2020-08-19 | trunk/cod/ As v0.6.5 is out, preparing for the next release. |
2011511.cif 2011511.hkl |
| 255444 | 2020-08-19 | trunk/cod/ Releasing v0.6.5. |
2011511.cif 2011511.hkl |
| 255264 | 2020-08-12 | trunk/cod/repository-hooks/ Fixing the pre-commit hook to report problems instead of piping them to logs. |
2011511.cif 2011511.hkl |
| 255263 | 2020-08-12 | trunk/cod/repository-hooks/ Adding 'pre-commit' script which calls both current pre-commit-* hook scripts. |
2011511.cif 2011511.hkl |
| 254674 | 2020-07-30 | trunk/cod/ Updating smiles-scripts to r198 under repository-hooks/. Enhancing test case tests/cases/pre-commit-smiles-check_002.sh. |
2011511.cif 2011511.hkl |
| 254673 | 2020-07-30 | trunk/cod/ Ensuring conformance of added SMILES descriptors to the OpenSMILES specification in pre-commit-smiles-check script. |
2011511.cif 2011511.hkl |
| 254672 | 2020-07-30 | trunk/cod/repository-hooks/ Adding external repository smiles-scripts to implement more sophisticated checking of committed SMILES strings. |
2011511.cif 2011511.hkl |
| 254671 | 2020-07-30 | trunk/cod/tests/ Adding a test for pre-commit-smiles-check. |
2011511.cif 2011511.hkl |
| 254670 | 2020-07-30 | trunk/cod/ Fixing a typo in a warning message generated by pre-commit-smiles-check. |
2011511.cif 2011511.hkl |
| 254652 | 2020-07-29 | trunk/cod/tests/ Adding a test case for recently implemented support for 'chemical_formula_descriptive' in optimade.pl. |
2011511.cif 2011511.hkl |
| 254651 | 2020-07-29 | trunk/cod/ Implementing support for 'chemical_formula_descriptive' structure property in optimade.pl. |
2011511.cif 2011511.hkl |
| 254650 | 2020-07-29 | trunk/cod/ Removing support for jMol Java applet. |
2011511.cif 2011511.hkl |
| 254649 | 2020-07-29 | trunk/cod/ Implementing support for 'chemical_formula_reduced' structure property in optimade.pl on MySQL/MariaDB servers having chemical_formula_reduced() function defined. |
2011511.cif 2011511.hkl |
| 254621 | 2020-07-28 | trunk/cod/ Relationship with 'references' is to-many in optimade.pl. |
2011511.cif 2011511.hkl |
| 254620 | 2020-07-28 | trunk/cod/ Removing broken link lib/perl5/FilterParser.pm. |
2011511.cif 2011511.hkl |
| 254619 | 2020-07-28 | trunk/cod/ Replacing HTTP with HTTPS in configuration example files. |
2011511.cif 2011511.hkl |
| 254597 | 2020-07-27 | trunk/cod/ Implementing support for 'chemical_formula_anonymous' structure property in optimade.pl on MySQL/MariaDB servers having chemical_formula_anonymous() function defined. |
2011511.cif 2011511.hkl |
| 254595 | 2020-07-27 | trunk/cod/ As v0.6.4 is out, preparing for the next release. |
2011511.cif 2011511.hkl |
| 254594 | 2020-07-27 | trunk/cod/ Releasing v0.6.4. |
2011511.cif 2011511.hkl |
| 254593 | 2020-07-27 | trunk/cod/ Updating cod-tools to v3.0.1 under lib/ and repository-hooks/. |
2011511.cif 2011511.hkl |
| 254552 | 2020-07-24 | trunk/cod/ (antanas@echidna) Removed: the jsmol-11.3.9 library that has not been used for at least several years. |
2011511.cif 2011511.hkl |
| 254550 | 2020-07-24 | trunk/cod/ Skipping CIF files from under cif/dictionaries/ in pre-commit-sql-update. |
2011511.cif 2011511.hkl |
| 254549 | 2020-07-24 | trunk/cod/ Fixing an issue with undefined last ID in optimade.pl. |
2011511.cif 2011511.hkl |
| 254547 | 2020-07-24 | trunk/cod/ Reporting unsupported zip comparisons in optimade.pl. |
2011511.cif 2011511.hkl |
| 254546 | 2020-07-24 | trunk/cod/ Accommodating IS KNOWN/IS UNKNOWN queries on foreign properties in optimade.pl. |
2011511.cif 2011511.hkl |
| 254545 | 2020-07-24 | trunk/cod/ Treating foreign properties as unknown in optimade.pl. |
2011511.cif 2011511.hkl |
| 254544 | 2020-07-24 | trunk/cod/ Moving repository hook configuration files to repository-hooks/config/. |
2011511.cif 2011511.hkl |
| 254543 | 2020-07-24 | trunk/cod/ Reading configuration files for post-commit-dic2ikiwiki-update and post-commit-update from config/ subdirectory. |
2011511.cif 2011511.hkl |
| 254542 | 2020-07-24 | trunk/cod/ Implementing means to specify Subversion user for post-commit-dic2ikiwiki-update in its configuration file. |
2011511.cif 2011511.hkl |
| 254541 | 2020-07-24 | trunk/cod/ Preserving dictionary tree structure in post-commit-dic2ikiwiki-update. |
2011511.cif 2011511.hkl |
| 254540 | 2020-07-24 | trunk/cod/tests/ Adding a test for post-commit-dic2ikiwiki-update with subdirectories. |
2011511.cif 2011511.hkl |
| 254510 | 2020-07-23 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 254509 | 2020-07-23 | trunk/ Reintegrating finished branch ^/branches/andrius-cod-tools-v3.0.0. |
2011511.cif 2011511.hkl |
| 254481 | 2020-07-22 | trunk/cod/tests/ Removing empty test optimade.pl_032. |
2011511.cif 2011511.hkl |
| 254480 | 2020-07-22 | trunk/cod/tests/ Fixing filter script for optimade.pl tests. |
2011511.cif 2011511.hkl |
| 254314 | 2020-07-15 | trunk/ (antanas@echidna) Changed: updated the CHANGELOG. |
2011511.cif 2011511.hkl |
| 254313 | 2020-07-15 | trunk/ (antanas@echidna) Changed: updated the 'post-commit' hook to properly detect the 'post-commit-dic2ikiwiki-update' script. |
2011511.cif 2011511.hkl |
| 254184 | 2020-07-10 | trunk/cod/ Fixing one more issue of 'api_version' starting with 'v'. |
2011511.cif 2011511.hkl |
| 254183 | 2020-07-10 | trunk/cod/ Field 'api_version' must not start with 'v' as per OPTIMADE specification. |
2011511.cif 2011511.hkl |
| 254182 | 2020-07-10 | trunk/cod/ Bugfix: REQUEST_URI was handled incorrectly in optimade.pl. |
2011511.cif 2011511.hkl |
| 254180 | 2020-07-10 | trunk/cod/ Fixing handling of REQUEST_URI in optimade.pl. |
2011511.cif 2011511.hkl |
| 254179 | 2020-07-10 | trunk/cod/ Confirming dependencies for Ubuntu 20.04. Adding a dependency, which appeared in Debian 10. |
2011511.cif 2011511.hkl |
| 254178 | 2020-07-10 | trunk/cod/ Rewriting all OPTIMADE requests to optimade.pl. |
2011511.cif 2011511.hkl |
| 254176 | 2020-07-10 | trunk/cod/ Handling the 'api_hint' in optimade.pl. |
2011511.cif 2011511.hkl |
| 254175 | 2020-07-10 | trunk/cod/ Properly reporting custom HTTP 553 error. |
2011511.cif 2011511.hkl |
| 254174 | 2020-07-10 | trunk/cod/ Implementing version checking in optimade.pl. HTTP 553 error is not thrown appropriately yet. |
2011511.cif 2011511.hkl |
| 254150 | 2020-07-09 | trunk/cod/ Simplifying the building of OPTIMADE::Filter. |
2011511.cif 2011511.hkl |
| 254149 | 2020-07-09 | trunk/cod/ Removing old source of OPTiMaDe::Filter v0.6.0. |
2011511.cif 2011511.hkl |
| 254148 | 2020-07-09 | trunk/cod/ Setting proper svn:ignore for lib/OPTIMADE-Filter-0.10.0. |
2011511.cif 2011511.hkl |
| 254147 | 2020-07-09 | trunk/cod/ Adapting optimade.pl to OPTIMADE::Filter v0.10.0. |
2011511.cif 2011511.hkl |
| 254146 | 2020-07-09 | trunk/cod/ Adding the source of OPTIMADE::Filter v0.10.0 (as downloaded from CPAN) to lib/ in preparation to transition to it from OPTiMaDe::FilterParser v0.6.0. |
2011511.cif 2011511.hkl |
| 254116 | 2020-07-08 | trunk/cod/tests/ Adapting bin-tests/post-commit-sql-update_005.* test case to cases/post-commit-sql-update_001.sh in an attempt to switch to absolute path independent setup. |
2011511.cif 2011511.hkl |
| 254115 | 2020-07-08 | trunk/cod/tests/ Removing absolute paths from the outputs under bin-outputs/. |
2011511.cif 2011511.hkl |
| 254076 | 2020-07-07 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 254075 | 2020-07-07 | trunk/cod/ Fixing 'representation' field in optimade.pl. |
2011511.cif 2011511.hkl |
| 254074 | 2020-07-07 | trunk/cod/ Preparing to support OPTIMADE v1.0.0. |
2011511.cif 2011511.hkl |
| 254073 | 2020-07-07 | trunk/cod/ Fixing 'available_api_versions' of info endpoint in optimade.pl. |
2011511.cif 2011511.hkl |
| 254072 | 2020-07-07 | trunk/cod/ Fixing responses to single entry queries in optimade.pl. |
2011511.cif 2011511.hkl |
| 254071 | 2020-07-07 | trunk/cod/ Implementing 'versions' endpoint in optimade.pl. |
2011511.cif 2011511.hkl |
| 254070 | 2020-07-07 | trunk/cod/ Rewriting optimade.pl to get the parameters from REQUEST_URI. |
2011511.cif 2011511.hkl |
| 254064 | 2020-07-07 | trunk/cod/sql/ (antanas@echidna) Changed: added SQL create statements for all tables that are considered a part of the `cod` database schema. |
2011511.cif 2011511.hkl |
| 254063 | 2020-07-07 | trunk/cod/sql/ (antanas@echidna) Removed: the 'validation_issues-create.sql' file since the 'validation_issues' table is not part of the `cod` database schema. |
2011511.cif 2011511.hkl |
| 254061 | 2020-07-07 | trunk/cod/sql/ (antanas@echidna) Changed: moved the 'example_x_cod-create.sql' file into the template directory. |
2011511.cif 2011511.hkl |
| 254060 | 2020-07-07 | trunk/cod/sql/ (antanas@echidna) Changed: added the `spacegroups` table create statement file since it was decided to include this table into the `cod` database schema. |
2011511.cif 2011511.hkl |
| 253661 | 2020-07-02 | trunk/cod/ As v0.6.3 is out, preparing for the next release. |
2011511.cif 2011511.hkl |
| 253660 | 2020-07-02 | trunk/cod/ Releasing v0.6.3. |
2011511.cif 2011511.hkl |
| 253659 | 2020-07-02 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 253658 | 2020-07-02 | trunk/cod/tests/ Adding a regression test case for issue https://projects.ibt.lt/repositories/issues/748. |
2011511.cif 2011511.hkl |
| 253657 | 2020-07-02 | trunk/cod/ Using numbers of attached hydrogen atoms in duplicate search in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 253656 | 2020-07-02 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 253655 | 2020-07-02 | trunk/ Updating cod-tools to v2.12 under lib/ and repository-hooks/. |
2011511.cif 2011511.hkl |
| 253619 | 2020-07-01 | trunk/ (antanas@echidna) Changed: updated the 'index.php' page to properly handle the changed default value of the 'news'.'end_timestamp' column. |
2011511.cif 2011511.hkl |
| 253618 | 2020-07-01 | trunk/cod/sql/ (antanas@echidna) Changed: updated the 'news' table to use NULL as the default value of the 'end_timestamp' column. |
2011511.cif 2011511.hkl |
| 253617 | 2020-07-01 | trunk/cod/sql/ (antanas@echidna) Changed: updated the 'smiles' table to have the same 'cod_id' column type as the 'data'.'file' column. |
2011511.cif 2011511.hkl |
| 253616 | 2020-07-01 | trunk/cod/ Bugfix: using counts of attached hydrogen atoms in the call to cif2cod in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 253615 | 2020-07-01 | trunk/cod/sql/ (antanas@echidna) Changed: updated the 'example_x_cod-create.sql' table creation template to be slightly more restrictive. |
2011511.cif 2011511.hkl |
| 253610 | 2020-07-01 | trunk/cod/ (antanas@echidna) Changed: moved some of the example config files into the newly created config directory. |
2011511.cif 2011511.hkl |
| 253564 | 2020-06-30 | trunk/cod/ As v0.6.2 is out, preparing for the next release. |
2011511.cif 2011511.hkl |
| 253561 | 2020-06-30 | trunk/cod/ Releasing v0.6.2. |
2011511.cif 2011511.hkl |
| 253560 | 2020-06-30 | trunk/cod/ Ceasing to canonicalize journal names for prepublication depositions. |
2011511.cif 2011511.hkl |
| 253309 | 2020-06-22 | trunk/cod/ As v0.6.1 is out, preparing for the next release. |
2011511.cif 2011511.hkl |
| 253307 | 2020-06-22 | trunk/cod/ Releasing v0.6.1. |
2011511.cif 2011511.hkl |
| 253303 | 2020-06-22 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 253302 | 2020-06-22 | trunk/ Updating cod-tools to v2.11 under lib/ and repository-hooks/. |
2011511.cif 2011511.hkl |
| 253275 | 2020-06-19 | trunk/cod/ Adding a test for recently fixed issue with journal names. |
2011511.cif 2011511.hkl |
| 253267 | 2020-06-19 | trunk/cod/ Linking to wwPDB instead of RCSB PDB in the index page. |
2011511.cif 2011511.hkl |
| 253244 | 2020-06-18 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 253243 | 2020-06-18 | trunk/cod/ Making journal name detection regular expression more sensitive, as the previous one used to lump journals ending with the same suffix together (see https://projects.ibt.lt/repositories/issues/723 for more detailed explanation). |
2011511.cif 2011511.hkl |
| 252992 | 2020-06-08 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 252991 | 2020-06-08 | trunk/cod/ Adding 'provider' field to OPTIMADE responses. |
2011511.cif 2011511.hkl |
| 252990 | 2020-06-08 | trunk/cod/tests/ Adding 'provider' field to OPTIMADE responses. |
2011511.cif 2011511.hkl |
| 252989 | 2020-06-08 | trunk/cod/ Returning JSON object instead of array in OPTIMADE queries for /info endpoint. |
2011511.cif 2011511.hkl |
| 252988 | 2020-06-08 | trunk/cod/ Replacing OPTiMaDe -> OPTIMADE in the topmost entry in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 251860 | 2020-05-07 | trunk/cod/ (antanas@kurmis) Changed: updated the path to the 'cif_cod.dic' dictionary in the bin/validate.sh script. |
2011511.cif 2011511.hkl |
| 248747 | 2020-03-04 | trunk/ (antanas@echidna) Changed: updated the successful server upgrade template message by introducing the date of the template. Normally, the message templete is commented out and is only uncommented when needed. |
2011511.cif 2011511.hkl |
| 248746 | 2020-03-04 | trunk/ (antanas@echidna) Fixed: added double qoutes around certain property values as required by XHTML 1.0 Strict. |
2011511.cif 2011511.hkl |
| 248578 | 2020-03-01 | trunk/cod/ Extending the handling of 'response_fields' to 'references' in optimade.pl. |
2011511.cif 2011511.hkl |
| 248577 | 2020-03-01 | trunk/cod/ Fixing the handling of 'response_fields' according to the OPTiMaDe specification. |
2011511.cif 2011511.hkl |
| 248576 | 2020-03-01 | trunk/cod/ IDs without revision number are not immutable in OPTiMaDe responses. |
2011511.cif 2011511.hkl |
| 248575 | 2020-03-01 | trunk/cod/ Removing 'modification_date' property from OPTiMaDe responses. |
2011511.cif 2011511.hkl |
| 248414 | 2020-02-24 | trunk/cod/ As v0.6.0 is out, preparing for the next release. |
2011511.cif 2011511.hkl |
| 248412 | 2020-02-24 | trunk/cod/ Releasing v0.6.0. |
2011511.cif 2011511.hkl |
| 248411 | 2020-02-24 | trunk/cod/ (antanas@echidna) Changed: updated 'xml' dependency from revision 248121 to revision 248157. |
2011511.cif 2011511.hkl |
| 248410 | 2020-02-24 | trunk/ (antanas@echidna) Changed: updated cod-tools to v2.10 under lib/ and repository-hooks/. |
2011511.cif 2011511.hkl |
| 248409 | 2020-02-24 | trunk/cod/ Updating cod-tools to rev. 7751 of v2.10 release branch under lib/ and repository-hooks/. |
2011511.cif 2011511.hkl |
| 248231 | 2020-02-17 | trunk/ (antanas@echidna) Added: the 'cif_core_restraints.dic', 'cif_ms.dic', 'cif_rho.dic' and 'cif_twinning.dic' dictionaries to the set of dictionaries that the deposited CIF files are validated against. |
2011511.cif 2011511.hkl |
| 248225 | 2020-02-17 | trunk/cod/tests/ Adjusting the tests to the changes in the cod-tools. |
2011511.cif 2011511.hkl |
| 248224 | 2020-02-17 | trunk/cod/ Adjusting the regular expression in bin/validate.sh to the changed text in cif_validate. |
2011511.cif 2011511.hkl |
| 248223 | 2020-02-17 | trunk/cod/ Updating cod-tools to rev. 7738 of v2.10 release branch under lib/ and repository-hooks/. |
2011511.cif 2011511.hkl |
| 248221 | 2020-02-16 | trunk/cod/tests/ Updating the test output cgi-outputs/cif-deposit.pl_030.out: warning about the missing bibliographic data should not be emitted for prepublication depositions. |
2011511.cif 2011511.hkl |
| 248220 | 2020-02-16 | trunk/cod/tests/ Updating the test output cgi-outputs/cif-deposit.pl_029.out: warning about the missing bibliographic data should not be emitted for prepublication depositions. |
2011511.cif 2011511.hkl |
| 248219 | 2020-02-16 | trunk/cod/tests/ Simplifying test setup script cgi-tests/cif-deposit.pl_029.setup. |
2011511.cif 2011511.hkl |
| 248157 | 2020-02-14 | cod/ (antanas@echidna) Changed: corrected a typo (compatability -> compatibility). The change would normally require a bugfix release, but since the schema v1.1.0 has not yet been included in any tag releases of the COD website nor made public on the COD website, the fix was made in the v1.1.0 version file. |
2011511.cif 2011511.hkl |
| 248156 | 2020-02-14 | trunk/cod/tests/ Updating one more test output. |
2011511.cif 2011511.hkl |
| 248153 | 2020-02-14 | trunk/cod/tests/ Adjusting outputs of Shell and PHP tests to the changes in the SQL data table schema, and the changes in the cod-tools package. |
2011511.cif 2011511.hkl |
| 248152 | 2020-02-14 | trunk/cod/tests/ Adjusting test outputs to the changes in the SQL data table scheme and the cod-tools package. |
2011511.cif 2011511.hkl |
| 248123 | 2020-02-13 | trunk/cod/ (antanas@echidna) Changed: updated the XML external dependency from revision 248082 to revision 248121. |
2011511.cif 2011511.hkl |
| 248122 | 2020-02-13 | trunk/ (antanas@echidna) Changed: updated the CHANGELOG. |
2011511.cif 2011511.hkl |
| 248121 | 2020-02-13 | trunk/cod/xml/documents/ (antanas@echidna) Changed: updated the symlinks to point to version v1.1 as the latest stable schema release. |
2011511.cif 2011511.hkl |
| 248120 | 2020-02-13 | trunk/cod/xml/documents/ (antanas@echidna) Changed: released version 1.1.0 of the COD database description. |
2011511.cif 2011511.hkl |
| 248119 | 2020-02-13 | trunk/cod/ (antanas@echidna) Changed: replaced the hardcoded schema name from the one with the version number ('database-description_v1.0.xml') to a versionless one ('database-description.xml'). |
2011511.cif 2011511.hkl |
| 248118 | 2020-02-13 | trunk/ (antanas@echidna) Added: the 'gofref' column to the 'data' table. |
2011511.cif 2011511.hkl |
| 248117 | 2020-02-13 | trunk/ (antanas@echidna) Changed: updated the information card page in regards to the addition of the 'gofref' column to the database. |
2011511.cif 2011511.hkl |
| 248084 | 2020-02-12 | trunk/cod/ (antanas@echidna) Changed: added the 'gofref' column to the list of updated columns in the 'post-commit-sql-update' script. |
2011511.cif 2011511.hkl |
| 248083 | 2020-02-12 | trunk/cod/ (antanas@echidna) Changed: updated the 'cod-tools' external dependency from v2.9 to version v2.10 (release candidate version for now.) Changed: updated the 'xml' external dependency from revision 194543 to revision 248082. |
2011511.cif 2011511.hkl |
| 248082 | 2020-02-12 | trunk/cod/xml/documents/ (antanas@echidna) Changed: added the description of the 'gofgt' field to the 'database-description_v1.1.0-dev.xml' schema. |
2011511.cif 2011511.hkl |
| 248081 | 2020-02-12 | trunk/cod/xml/documents/ (antanas@echidna) Changed: added a symlink from version '1.0.0' to version '1.0'. |
2011511.cif 2011511.hkl |
| 248080 | 2020-02-12 | trunk/cod/xml/documents/ (antanas@echidna) Changed: updated the database description to use a three-part schema number. |
2011511.cif 2011511.hkl |
| 247456 | 2020-02-03 | trunk/cod/ As v0.5.2 is out, preparing for the next release. |
2011511.cif 2011511.hkl |
| 247452 | 2020-02-03 | trunk/cod/ Preparing for a patch release. |
2011511.cif 2011511.hkl |
| 247451 | 2020-02-03 | trunk/cod/ Adding a news item concerning the new release of COD-derived PANalytical search-match database. |
2011511.cif 2011511.hkl |
| 247053 | 2020-01-21 | trunk/ (antanas@echidna) Added: a .htaccess file under /bibliography to force the UTF-8 encoding on the served bibliography files. |
2011511.cif 2011511.hkl |
| 247033 | 2020-01-20 | trunk/ (antanas@echidna) Changed: updated the description of the bin/select-smiles-codid script. Changed: replaced the phrase 'can not' with 'cannot' in several error messages of scripts from the bin/ directory. |
2011511.cif 2011511.hkl |
| 247022 | 2020-01-20 | trunk/ (antanas@echidna) Changed: added an explicit '--do-not-check-bibliography' option to the prepublication and personal communication depositions instead on relying on regular expressions to exclude such warning messages. |
2011511.cif 2011511.hkl |
| 247020 | 2020-01-20 | trunk/ (antanas@echidna) Changed: added the '--check-z' option to the 'cif_cod_check' option list to be consistent with the option list used in the 'validate.sh' script. |
2011511.cif 2011511.hkl |
| 247019 | 2020-01-20 | trunk/ (antanas@echidna) Changed: added an explicit '--check-pd-block-relations' option as an inverse of the '--no-check-pd-block-relations' instead of relying on the default behaviour of the 'cif_cod_check' script. |
2011511.cif 2011511.hkl |
| 246968 | 2020-01-17 | trunk/cod/tests/ Removing unused configuration variables. |
2011511.cif 2011511.hkl |
| 246967 | 2020-01-17 | trunk/cod/tests/ Removing the need to configure recaptcha keys. |
2011511.cif 2011511.hkl |
| 246966 | 2020-01-17 | trunk/cod/tests/ Fixing repository set up for PHP tests. |
2011511.cif 2011511.hkl |
| 246965 | 2020-01-17 | trunk/cod/tests/ Removing the need to configure webmaster's e-mail. |
2011511.cif 2011511.hkl |
| 246964 | 2020-01-17 | trunk/cod/tests/ Removing the need to configure testing repository locations. |
2011511.cif 2011511.hkl |
| 246963 | 2020-01-17 | trunk/cod/tests/ Removing the need to configure Subversion headers. |
2011511.cif 2011511.hkl |
| 246962 | 2020-01-17 | trunk/cod/tests/ No need to setup 'dir_upload' for cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 246961 | 2020-01-17 | trunk/cod/tests/ Removing the need to configure 'dir_upload' for cif-deposit.pl as it is never used in the tests. |
2011511.cif 2011511.hkl |
| 246960 | 2020-01-17 | trunk/cod/tests/ Removing command line option --multipart/form-data from Makelocal-test. |
2011511.cif 2011511.hkl |
| 246959 | 2020-01-17 | trunk/cod/tests/ Removing option --multipart/form-data from run_test. |
2011511.cif 2011511.hkl |
| 246958 | 2020-01-17 | trunk/cod/tests/ Removing the need of --multipart/form-data command option in run_test. |
2011511.cif 2011511.hkl |
| 246957 | 2020-01-17 | trunk/cod/tests/ Relying on automatically set environment instead of requiring and generating .env files. However, support for .env files is not lost. |
2011511.cif 2011511.hkl |
| 246956 | 2020-01-17 | trunk/cod/tests/ Getting close to the eradication of ENV files from CGI and PHP tests. |
2011511.cif 2011511.hkl |
| 246955 | 2020-01-17 | trunk/cod/tests/ Removing the need to pregenerate .env files for tests. |
2011511.cif 2011511.hkl |
| 246954 | 2020-01-17 | trunk/cod/tests/ Fixing broken links, adjusting cgi-tests/optimade.pl.setup. |
2011511.cif 2011511.hkl |
| 246953 | 2020-01-17 | trunk/cod/tests/ Setup script cgi-tests/optimade.pl.setup is also used by cif-template.pl. |
2011511.cif 2011511.hkl |
| 246952 | 2020-01-17 | trunk/cod/tests/ Considerably simplifying cgi-tests/optimade.pl.setup: tests should now run faster. |
2011511.cif 2011511.hkl |
| 246951 | 2020-01-17 | trunk/cod/tests/ Getting rid of 'cgi-inputs' symlink. |
2011511.cif 2011511.hkl |
| 246913 | 2020-01-16 | trunk/cod/tests/ Simplifying cgi-tests/cif-deposit.pl.setup even more. |
2011511.cif 2011511.hkl |
| 246912 | 2020-01-16 | trunk/cod/tests/ Considerably simplifying cgi-tests/cif-deposit.pl.setup: tests should now run faster. |
2011511.cif 2011511.hkl |
| 246911 | 2020-01-16 | trunk/cod/ Adding an empty entry to the CHANGELOG. Bumping .version. |
2011511.cif 2011511.hkl |
| 246909 | 2020-01-16 | trunk/cod/ Bumping version prior to tagging the v0.5.1 release. |
2011511.cif 2011511.hkl |
| 246908 | 2020-01-16 | trunk/cod/tests/ Adjusting test output bin-outputs/post-commit-sql-update_004.out. |
2011511.cif 2011511.hkl |
| 246907 | 2020-01-16 | trunk/ (antanas@echidna) Changed: removed the superflous version number from the CHANGELOG file. |
2011511.cif 2011511.hkl |
| 246906 | 2020-01-16 | trunk/ (antanas@echidna) Changed: updated cod-tools to v2.9 under lib/ and repository-hooks/. |
2011511.cif 2011511.hkl |
| 246905 | 2020-01-16 | trunk/cod/ Refolding message test in tpl/check_user.php. |
2011511.cif 2011511.hkl |
| 246872 | 2020-01-15 | trunk/cod/ (antanas@echidna) Added: the 'php-curl' dependency to the Ubuntu-16.04 dependency list. |
2011511.cif 2011511.hkl |
| 246871 | 2020-01-15 | trunk/cod/dependencies/ (antanas@echidna) Added: the initial version of the Debian-10 dependency file. |
2011511.cif 2011511.hkl |
| 246867 | 2020-01-15 | trunk/ (antanas@echidna) Changed: replaced several instances of the hardcoded COD acronym with the PHP <?=$db_ABBRV?> construct. |
2011511.cif 2011511.hkl |
| 246866 | 2020-01-15 | trunk/ (antanas@echidna) Changed: moved a variable into the scope that it is actually used in. |
2011511.cif 2011511.hkl |
| 246816 | 2020-01-14 | trunk/cod/ Adding an empty entry to the CHANGELOG. Bumping .version. |
2011511.cif 2011511.hkl |
| 246628 | 2020-01-10 | trunk/cod/ On the second thought, this version will be v0.5.0. |
2011511.cif 2011511.hkl |
| 246627 | 2020-01-10 | trunk/cod/ Bumping version prior to tagging the v0.4.3 release. |
2011511.cif 2011511.hkl |
| 246626 | 2020-01-10 | trunk/ (antanas@echidna) Changed: slightly reworded the CHANGELOG. |
2011511.cif 2011511.hkl |
| 246625 | 2020-01-10 | trunk/ (antanas@echidna) Changed: slightly updated the CHANGELOG. |
2011511.cif 2011511.hkl |
| 246624 | 2020-01-10 | trunk/ (antanas@echidna) Changed: the protocol of several URLs in the 'search.html' page from HTTP to HTTPS. |
2011511.cif 2011511.hkl |
| 246623 | 2020-01-09 | trunk/ (antanas@echidna) Changed: allowed a longer execution time for the 'results.php' script when handling data download in 'csv' or 'json' file formats. |
2011511.cif 2011511.hkl |
| 246622 | 2020-01-09 | trunk/ (antanas@echidna) Changed: updated the 'results.php' script to read database results in an incremental manner instead of slurping. |
2011511.cif 2011511.hkl |
| 246621 | 2020-01-09 | trunk/ (antanas@echidna) Changed: updated the 'post-commit' hook to only execute the 'post-commit-dic2ikiwiki-update' hook if it is properly setup. |
2011511.cif 2011511.hkl |
| 246620 | 2020-01-09 | trunk/cod/ Finishing incomplete CHANGELOG entry. |
2011511.cif 2011511.hkl |
| 246619 | 2020-01-09 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 246618 | 2020-01-09 | trunk/cod/ Avoiding POSIX collating elements in result.php due to switch from MySQL to MariaDB. |
2011511.cif 2011511.hkl |
| 246617 | 2020-01-09 | trunk/cod/ Bugfix: detecting CIF format version in edited CIF/Fobs files. |
2011511.cif 2011511.hkl |
| 246616 | 2020-01-09 | trunk/cod/ Switching off 'session.use_trans_sid' PHP INI setting. |
2011511.cif 2011511.hkl |
| 246615 | 2020-01-09 | trunk/ (antanas@echidna) Changed: updated the 'cod-tools' external dependency under /lib and /repository-hooks to v2.8. |
2011511.cif 2011511.hkl |
| 246613 | 2020-01-08 | trunk/ (antanas@echidna) Fixed: added an empty string as a mandatory placeholder value for the NOT NULL 'data.text' column in the 'pre-commit-sql-update' SVN hook. |
2011511.cif 2011511.hkl |
| 246612 | 2020-01-07 | trunk/cod/ Adding logrotate configuration file to rotate local log file. |
2011511.cif 2011511.hkl |
| 246611 | 2020-01-06 | trunk/cod/ Adding libapache2-mod-php to the lists of dependencies. |
2011511.cif 2011511.hkl |
| 246610 | 2020-01-06 | trunk/cod/ Describing recent changes in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 246609 | 2020-01-06 | trunk/cod/ Adding year 2020. |
2011511.cif 2011511.hkl |
| 246226 | 2019-12-27 | trunk/cod/tests/ Finishing test case php-tests/manage_depositions.php_001.*. |
2011511.cif 2011511.hkl |
| 246225 | 2019-12-27 | trunk/cod/tests/ Moving test case php-tests/check_user.php_013.* to php-tests/manage_depositions.php_001.*. Not tried yet. |
2011511.cif 2011511.hkl |
| 246224 | 2019-12-27 | trunk/cod/tests/ Updating php-outputs/check_user.php_001.out as the output form has been changed. |
2011511.cif 2011511.hkl |
| 246223 | 2019-12-27 | trunk/cod/tests/ Updating php-outputs/check_user.php_002.out as no output is generated by the script anymore. |
2011511.cif 2011511.hkl |
| 246222 | 2019-12-27 | trunk/cod/tests/ Updating php-outputs/check_user.php_004.out as no output is generated by the script anymore. |
2011511.cif 2011511.hkl |
| 246221 | 2019-12-27 | trunk/cod/tests/ Updating php-outputs/check_user.php_009.out as no output is generated by the script anymore. |
2011511.cif 2011511.hkl |
| 246220 | 2019-12-27 | trunk/cod/tests/ Updating php-outputs/check_user.php_014.out as no output is generated by the script anymore. |
2011511.cif 2011511.hkl |
| 245029 | 2019-12-12 | trunk/cod/ Switching to Perl DBI-compatible placeholder-based SQL generation in optimade.pl. |
2011511.cif 2011511.hkl |
| 245028 | 2019-12-12 | trunk/cod/ Simplifying code in optimade.pl. |
2011511.cif 2011511.hkl |
| 245027 | 2019-12-12 | trunk/cod/ Simplifying code in optimade.pl. |
2011511.cif 2011511.hkl |
| 245026 | 2019-12-12 | trunk/cod/ Simplifying a couple of code constructions in optimade.pl. |
2011511.cif 2011511.hkl |
| 245025 | 2019-12-12 | trunk/cod/ Removing obsolete sources of OPTiMaDe::FilterParser v0.3.0. |
2011511.cif 2011511.hkl |
| 245024 | 2019-12-12 | trunk/cod/ Transitioning from OPTiMaDe::FilterParser v0.3.0 to OPTiMaDe::Filter v0.6.0 in OPTiMaDe filter language parsing. |
2011511.cif 2011511.hkl |
| 245023 | 2019-12-12 | trunk/cod/tests/ Removing API versions from the test outputs of optimade.pl. |
2011511.cif 2011511.hkl |
| 245022 | 2019-12-12 | trunk/cod/ Adding the source of OPTiMaDe::Filter v0.6.0 (as downloaded from CPAN) to lib/ in preparation to transition to it from OPTiMaDe::FilterParser v0.3.0. |
2011511.cif 2011511.hkl |
| 245006 | 2019-12-12 | trunk/cod/tests/ Removing dates from lines added by svn:keywords. |
2011511.cif 2011511.hkl |
| 245004 | 2019-12-11 | trunk/cod/ Updating cod-tools to v2.7 under lib/ and repository-hooks/. |
2011511.cif 2011511.hkl |
| 245003 | 2019-12-11 | trunk/cod/ Undoing accidentally committed debug print in upload.php: svn merge -c -244914 upload.php |
2011511.cif 2011511.hkl |
| 244921 | 2019-12-05 | trunk/cod/ URI-escaping DOI values before attempting to resolve them in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 244920 | 2019-12-05 | trunk/cod/ Bugfix: DOI resolver was used improperly in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 244919 | 2019-12-05 | trunk/cod/ Fixing DOI resolution check in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 244918 | 2019-12-05 | trunk/cod/ Updating php-outputs/initiate_deposition.php_002.out: after redirect, the script will not output anything anymore. |
2011511.cif 2011511.hkl |
| 244917 | 2019-12-05 | trunk/cod/ Reworking test case cif-deposit.pl_048 to output full CIF and HKL files, as number of bytes in files is poorly indicative of the changes in them. |
2011511.cif 2011511.hkl |
| 244915 | 2019-12-04 | trunk/cod/ Fixing test case post-commit-update_011. |
2011511.cif 2011511.hkl |
| 244914 | 2019-12-04 | trunk/cod/ Removing 'upload.php_003' test case, as it no longer works as text/x-perl is still text and is allowed to be uploaded to the validation and deposition interface. |
2011511.cif 2011511.hkl |
| 244913 | 2019-12-04 | trunk/cod/ Fixing test case information_card.php_001. |
2011511.cif 2011511.hkl |
| 244912 | 2019-12-04 | trunk/cod/ Removing commented out code from view.php. Updating php-outputs/view.php_001.out. |
2011511.cif 2011511.hkl |
| 244911 | 2019-12-04 | trunk/cod/ Describing recent changes in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 244910 | 2019-12-04 | trunk/cod/ Forbidding changing CIF versions in the validation workflow. |
2011511.cif 2011511.hkl |
| 244909 | 2019-12-04 | trunk/cod/ Fixing a bug in cifversion() function. Adding a test case. |
2011511.cif 2011511.hkl |
| 244908 | 2019-12-04 | trunk/cod/ Updating test output php-outputs/check_user.php_003.out after the addition of the privacy statement to check_user.php. |
2011511.cif 2011511.hkl |
| 244907 | 2019-12-04 | trunk/cod/ Detecting and storing CIF versions in PHP session storage. |
2011511.cif 2011511.hkl |
| 244906 | 2019-12-04 | trunk/cod/ Describing recent changes in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 244905 | 2019-12-04 | trunk/cod/ Switching from COD::CIF::Data::CODPredepositionCheck::run_command() to PipeHandler::run_command() in cod{cif,sql}2rdf.pl. |
2011511.cif 2011511.hkl |
| 244904 | 2019-12-04 | trunk/cod/ Implementing option in PipeHandler::run_command() to control the timeout. |
2011511.cif 2011511.hkl |
| 244903 | 2019-12-04 | trunk/cod/ Reordering imports alphabetically in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 244902 | 2019-12-04 | trunk/cod/ Removing run_command() from cif-deposit.pl, using PipeHandler::run_command() instead. |
2011511.cif 2011511.hkl |
| 244901 | 2019-12-04 | trunk/cod/ Preparing to move run_command() function out of cif-deposit.pl to a separate module, which could be used by other scripts. |
2011511.cif 2011511.hkl |
| 244900 | 2019-12-04 | trunk/cod/ Adding an empty entry to the CHANGELOG. Bumping .version. |
2011511.cif 2011511.hkl |
| 244898 | 2019-12-04 | trunk/cod/ Bumping version prior to tagging the v0.4.2 release. |
2011511.cif 2011511.hkl |
| 244891 | 2019-12-03 | trunk/cod/ Adding a test case for index meta-database of optimade.pl. |
2011511.cif 2011511.hkl |
| 244890 | 2019-12-03 | trunk/cod/ Returning index meta-database for base URL requests in optimade.pl. |
2011511.cif 2011511.hkl |
| 244889 | 2019-12-03 | trunk/cod/ Returning correct values of 'data_available' and 'data_returned' in optimade.pl. |
2011511.cif 2011511.hkl |
| 244840 | 2019-12-02 | trunk/cod/ (antanas@echidna) Changed: updated the CHANGELOG. |
2011511.cif 2011511.hkl |
| 244839 | 2019-12-02 | trunk/cod/ (antanas@echidna) Changed: replaced the phrase 'can not' with 'cannot' in several scripts under cgi-bin/. |
2011511.cif 2011511.hkl |
| 231200 | 2019-11-22 | trunk/ (antanas@echidna) Changed: added the .version file. |
2011511.cif 2011511.hkl |
| 227881 | 2019-11-15 | trunk/ (antanas@echidna) Changed: updated the wording of the privacy statement as suggested by Peter Moeck. |
2011511.cif 2011511.hkl |
| 227790 | 2019-11-14 | trunk/cod/ Adding an empty entry to the CHANGELOG. |
2011511.cif 2011511.hkl |
| 227788 | 2019-11-14 | trunk/cod/ Preparing to release v0.4.1. |
2011511.cif 2011511.hkl |
| 227784 | 2019-11-14 | cod/ (antanas@echidna) Changed: slightly reworded the policy statement. |
2011511.cif 2011511.hkl |
| 227781 | 2019-11-14 | Updating CHANGELOG. | 2011511.cif 2011511.hkl |
| 227780 | 2019-11-14 | trunk/cod/tpl/ (coder@cod2.ibt.lt) Adding privacy statement. |
2011511.cif 2011511.hkl |
| 227666 | 2019-11-12 | trunk/cod/ Switching from HTTP to HTTPS in hyperlinks to the wiki and the website itself. |
2011511.cif 2011511.hkl |
| 225392 | 2019-11-08 | trunk/cod/ Release v0.4.0 is out. Adding an empty stanza in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 225390 | 2019-11-08 | trunk/cod/ Preparing for v0.4.0 release. |
2011511.cif 2011511.hkl |
| 225389 | 2019-11-08 | trunk/cod/ Switching to 2.5 release of cod-tools under lib/ and repository-hooks/. |
2011511.cif 2011511.hkl |
| 223463 | 2019-11-07 | trunk/cod/ Updating the CHANGELOG. |
2011511.cif 2011511.hkl |
| 223452 | 2019-11-07 | trunk/cod/ Updating cod-tools to rev. 7312 repository-hooks/. |
2011511.cif 2011511.hkl |
| 223451 | 2019-11-07 | trunk/cod/tests/ Updating tests for post-commit-dic2ikiwiki-update as the maximum of ToC levels has been increased. |
2011511.cif 2011511.hkl |
| 223450 | 2019-11-07 | trunk/cod/ Updating cod-tools to rev. 7312 under lib/. |
2011511.cif 2011511.hkl |
| 223411 | 2019-11-06 | trunk/cod/ Failures to fetch or reconstruct a structure in optimade.pl are now reported as warnings instead of critical errors. |
2011511.cif 2011511.hkl |
| 223410 | 2019-11-06 | trunk/cod/ Adding a test case for optimade.pl demonstrating a problem with failure to reconstruct a crystal structure from a CIF file. |
2011511.cif 2011511.hkl |
| 223409 | 2019-11-06 | trunk/cod/ URL-encoding filter strings that go to URLs in optimade.pl. |
2011511.cif 2011511.hkl |
| 223408 | 2019-11-06 | trunk/cod/ Outputting JSON in canonical order from optimade.pl. |
2011511.cif 2011511.hkl |
| 223407 | 2019-11-06 | trunk/cod/ Reducing limit of items on a page to 10 in optimade.pl. |
2011511.cif 2011511.hkl |
| 218980 | 2019-10-01 | trunk/cod/ Adding {"links"}{"prev"} to the output of optimade.pl. |
2011511.cif 2011511.hkl |
| 218979 | 2019-10-01 | trunk/cod/ Adding {"links"}{"first"} to the output of optimade.pl. |
2011511.cif 2011511.hkl |
| 218978 | 2019-10-01 | trunk/cod/ Switching to offset + limit based pagination in optimade.pl. |
2011511.cif 2011511.hkl |
| 218977 | 2019-10-01 | trunk/cod/ Implementing page number-based pagination in optimade.pl. |
2011511.cif 2011511.hkl |
| 218976 | 2019-10-01 | trunk/cod/ Implementing handling of 'page_offset' in optimade.pl. |
2011511.cif 2011511.hkl |
| 218808 | 2019-09-25 | trunk/cod/ Using correct Content Type for all responses of optimade.pl. |
2011511.cif 2011511.hkl |
| 218807 | 2019-09-25 | trunk/cod/ Setting correct Internet Media Type for error reports of optimade.pl. |
2011511.cif 2011511.hkl |
| 218806 | 2019-09-25 | trunk/cod/ Reducing the maximum page limit to 100 in optimade.pl to reduce the server-side resource usage. |
2011511.cif 2011511.hkl |
| 218764 | 2019-09-24 | trunk/ (saulius@koala.ibt.lt) Disallowing '/cod/cgi-bin/news-rss.pl' in robots.txt. |
2011511.cif 2011511.hkl |
| 217866 | 2019-08-30 | trunk/cod/ Fixing typos in new.html. |
2011511.cif 2011511.hkl |
| 217749 | 2019-08-27 | trunk/cod/ Including 'nsites', 'species' and 'species_at_sites' to the output of optimade.pl. |
2011511.cif 2011511.hkl |
| 217748 | 2019-08-27 | trunk/cod/ Changing the way the 'response_fields' is handled by optimade.pl to match the suggestion in https://github.com/Materials-Consortia/OPTiMaDe/issues/181. |
2011511.cif 2011511.hkl |
| 217743 | 2019-08-27 | trunk/cod/ Bugfix: IS KNOWN/IS UNKNOWN queries were not converted correctly -- forgot to commit the actual fix. |
2011511.cif 2011511.hkl |
| 217727 | 2019-08-26 | trunk/cod/ Bugfix: IS KNOWN/IS UNKNOWN queries were not converted correctly. |
2011511.cif 2011511.hkl |
| 217726 | 2019-08-26 | trunk/cod/ Fixing the remaining test cases. |
2011511.cif 2011511.hkl |
| 217725 | 2019-08-26 | trunk/cod/ Updating test cases for optimade.pl. |
2011511.cif 2011511.hkl |
| 217724 | 2019-08-26 | trunk/cod/ Adding a test case for recently implemented coordinate extraction in optimade.pl. |
2011511.cif 2011511.hkl |
| 217683 | 2019-08-23 | trunk/cod/ Implementing Cartesian site positions's representation in optimade.pl. Tests are not remade yet. The code should be handled with care, as Cartesian coordinate extraction is a slow process, and may possibly cause timeouts or denial-of-service. |
2011511.cif 2011511.hkl |
| 217682 | 2019-08-23 | trunk/cod/ Implementing undocumented feature to exclude certain fields from the output of optimade.pl. |
2011511.cif 2011511.hkl |
| 217619 | 2019-08-20 | trunk/cod/ Minor fix of the logic in optimade.pl. |
2011511.cif 2011511.hkl |
| 217618 | 2019-08-20 | trunk/cod/ Adding the description for 'lattice_vectors' in optimade.pl. |
2011511.cif 2011511.hkl |
| 217617 | 2019-08-20 | trunk/cod/ Separating unknown and non-queryable properties in optimade.pl. |
2011511.cif 2011511.hkl |
| 217616 | 2019-08-20 | trunk/cod/ Adding 'lattice_vectors' to the structures entries in optimade.pl. |
2011511.cif 2011511.hkl |
| 217615 | 2019-08-20 | trunk/cod/ Adding descriptions for the rest of the required structures properties in optimade.pl. |
2011511.cif 2011511.hkl |
| 217614 | 2019-08-20 | trunk/cod/ Handling 'elements HAS {ALL,ANY} ...' filters in optimade.pl. |
2011511.cif 2011511.hkl |
| 217613 | 2019-08-20 | trunk/cod/ Handling 'elements HAS ...' filters in optimade.pl. |
2011511.cif 2011511.hkl |
| 217612 | 2019-08-20 | trunk/cod/ Handling 'LENGTH elements ...' filters in optimade.pl. |
2011511.cif 2011511.hkl |
| 217611 | 2019-08-20 | trunk/cod/ Rewriting filter modifications using OPTiMaDe::FilterParser::modify() in optimade.pl. |
2011511.cif 2011511.hkl |
| 217610 | 2019-08-20 | trunk/cod/ Switching OPTiMaDe-FilterParser from v0.1.0 to v0.3.0 under lib/. |
2011511.cif 2011511.hkl |
| 217587 | 2019-08-19 | trunk/cod/ Detecting and reporting requests for other than JSON response format in optimade.pl. |
2011511.cif 2011511.hkl |
| 217586 | 2019-08-19 | trunk/cod/ Implementing handling of 'response_fields' parameter in optimade.pl. |
2011511.cif 2011511.hkl |
| 217585 | 2019-08-19 | trunk/cod/ Convering die()s to throws of HTTP::Exception in optimade.pl. |
2011511.cif 2011511.hkl |
| 217584 | 2019-08-19 | trunk/cod/ Placing proper HTTP message next to HTTP error code in messages printed by optimade.pl. |
2011511.cif 2011511.hkl |
| 217583 | 2019-08-19 | trunk/cod/ Preparing to throw and catch HTTP::Exception-type exceptions in optimade.pl. |
2011511.cif 2011511.hkl |
| 217582 | 2019-08-19 | trunk/cod/ Renaming 'response_limit' -> 'page_limit' as per OPTiMaDe specification. |
2011511.cif 2011511.hkl |
| 217581 | 2019-08-19 | trunk/cod/ Reporting errors as mandated in OPTiMaDe v0.10.0 specification. |
2011511.cif 2011511.hkl |
| 217465 | 2019-08-08 | trunk/cod/ Bugfix: correctly translating 'IS KNOWN'/'IS UNKNOWN' to SQL in optimade.pl. |
2011511.cif 2011511.hkl |
| 217435 | 2019-08-06 | trunk/cod/ Returning nulls for unsupported mandatory properties in optimade.pl. |
2011511.cif 2011511.hkl |
| 217434 | 2019-08-06 | trunk/cod/ Fixing UTF-8 related issues in optimade.pl. |
2011511.cif 2011511.hkl |
| 217400 | 2019-08-05 | trunk/cod/ Updating RewriteRule for OPTiMaDe. |
2011511.cif 2011511.hkl |
| 217399 | 2019-08-05 | trunk/cod/ Fixing a pair of comments in optimade.pl. |
2011511.cif 2011511.hkl |
| 217398 | 2019-08-05 | trunk/cod/ Implementing filtering on references' properties. |
2011511.cif 2011511.hkl |
| 217397 | 2019-08-05 | trunk/cod/tests/ Adding a test case for optimade.pl. |
2011511.cif 2011511.hkl |
| 217396 | 2019-08-05 | trunk/cod/ Adding descriptions of some more fields of the references in optimade.pl. |
2011511.cif 2011511.hkl |
| 217395 | 2019-08-05 | trunk/cod/ Implementing search by references in optimade.pl. |
2011511.cif 2011511.hkl |
| 217394 | 2019-08-05 | trunk/cod/ Implementing /info/references endpoint. |
2011511.cif 2011511.hkl |
| 217393 | 2019-08-05 | trunk/cod/ Preparing to have 'references' fields described and searched in optimade.pl. |
2011511.cif 2011511.hkl |
| 217392 | 2019-08-05 | trunk/cod/ Removing unused external source directory lib/Materials-Consortia-API/. |
2011511.cif 2011511.hkl |
| 217390 | 2019-08-05 | trunk/cod/ Reintegrating finished branch 'andrius-OPTiMaDe-FilterParser'. |
2011511.cif 2011511.hkl |
| 217196 | 2019-07-20 | trunk/cod/ Changing target OPTiMaDe API version to v0.10.0. |
2011511.cif 2011511.hkl |
| 217195 | 2019-07-20 | trunk/cod/tests/ Filtering out versions from the output of optimade.pl tests. |
2011511.cif 2011511.hkl |
| 217132 | 2019-07-17 | trunk/cod/ Adding a description of 'dimension_types' for optimade.pl. |
2011511.cif 2011511.hkl |
| 217131 | 2019-07-17 | trunk/ Adding mandatory field 'elements' for structures in optimade.pl. |
2011511.cif 2011511.hkl |
| 217130 | 2019-07-17 | trunk/cod/ Bugfix: 'authors' array was incorrect in optimade.pl. |
2011511.cif 2011511.hkl |
| 217129 | 2019-07-17 | trunk/cod/ Adding relationships to references for structures in optimade.pl. |
2011511.cif 2011511.hkl |
| 217128 | 2019-07-17 | trunk/cod/ Removing empty/undefined fields prior to processing in optimade.pl. |
2011511.cif 2011511.hkl |
| 217127 | 2019-07-17 | trunk/cod/ IDs are strings in OPTiMaDe. |
2011511.cif 2011511.hkl |
| 217126 | 2019-07-17 | trunk/cod/ Fixing ID recognition and type of 'last_id' in optimade.pl. |
2011511.cif 2011511.hkl |
| 217125 | 2019-07-17 | trunk/cod/ Adding 'pages' field for references in optimade.pl. |
2011511.cif 2011511.hkl |
| 217124 | 2019-07-17 | trunk/cod/ Implementing support of 'references' endpoint. |
2011511.cif 2011511.hkl |
| 217123 | 2019-07-17 | trunk/cod/ Preparing to implement handling of 'references' endpoint. |
2011511.cif 2011511.hkl |
| 217122 | 2019-07-17 | trunk/cod/ URLs of entry listing endpoints have been inverted in OPTiMaDe specification. |
2011511.cif 2011511.hkl |
| 217121 | 2019-07-17 | trunk/cod/ Field 'local_id' has been removed from OPTiMaDe specification. |
2011511.cif 2011511.hkl |
| 216616 | 2019-06-28 | trunk/cod/ Adding 'dimension_types' to optimade.pl. |
2011511.cif 2011511.hkl |
| 216615 | 2019-06-28 | trunk/cod/ 'nelements' is a number in OPTiMaDe. |
2011511.cif 2011511.hkl |
| 216614 | 2019-06-28 | trunk/cod/ Type 'structure' is now 'structures' in OPTiMaDe. |
2011511.cif 2011511.hkl |
| 216613 | 2019-06-28 | trunk/cod/ COD 'formula' has been standardized by OPTiMaDe as 'chemical_formula_hill'. |
2011511.cif 2011511.hkl |
| 216612 | 2019-06-28 | trunk/cod/ 'implementation' is now a part of OPTiMaDe standard. |
2011511.cif 2011511.hkl |
| 216611 | 2019-06-28 | trunk/cod/ Removing 'all' endpoint from optimade.pl. |
2011511.cif 2011511.hkl |
| 216596 | 2019-06-27 | trunk/cod/ Displaying DOI links to all publications. |
2011511.cif 2011511.hkl |
| 216027 | 2019-06-17 | trunk/cod/ Bugfix: fixing incorrect logic, which was effectively disabling the substructure search by SMARTS in result.php. |
2011511.cif 2011511.hkl |
| 216021 | 2019-06-17 | trunk/cod/ Bugfix: allowing '%' symbols in the input SMARTS in result.php. |
2011511.cif 2011511.hkl |
| 215742 | 2019-06-07 | trunk/cod/ Bugfix: 'structure' -> 'structures' entry type in optimade.pl. |
2011511.cif 2011511.hkl |
| 215606 | 2019-05-30 | trunk/cod/ Executing post-commit-dic2ikiwiki-update in the post-commit hook. Fixing PATH setting in post-commit-dic2ikiwiki-update. |
2011511.cif 2011511.hkl |
| 215605 | 2019-05-30 | trunk/cod/ Dropping dependency on libtext-unidecode-perl, as this package is no longer used directly; it is now inherited from cod-tools. |
2011511.cif 2011511.hkl |
| 215604 | 2019-05-30 | trunk/cod/ Using COD::AuthorNames::author_names_are_the_same() to check supplied author names. Updating cod-tools to rev. 7089 under lib/. |
2011511.cif 2011511.hkl |
| 215603 | 2019-05-30 | trunk/cod/ Updating cod-tools to rev. 7086 under lib/. |
2011511.cif 2011511.hkl |
| 215589 | 2019-05-29 | trunk/cod/ Code released. Preparing for the forthcoming release. |
2011511.cif 2011511.hkl |
| 215587 | 2019-05-29 | trunk/cod/ Preparing for bugfix release. |
2011511.cif 2011511.hkl |
| 215570 | 2019-05-28 | trunk/cod/ Silencing a pair of 'Undefined index' messages. |
2011511.cif 2011511.hkl |
| 215569 | 2019-05-28 | trunk/cod/tests/ Updating a part of php-outputs/check_user.php_013.out. |
2011511.cif 2011511.hkl |
| 215568 | 2019-05-28 | trunk/cod/ Bugfix: fixing author name comparison in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 215566 | 2019-05-28 | trunk/cod/ Code released. Preparing for the forthcoming release. |
2011511.cif 2011511.hkl |
| 215564 | 2019-05-28 | trunk/ Preparing for a release. |
2011511.cif 2011511.hkl |
| 215563 | 2019-05-28 | trunk/cod/ Clarifying that cif-template.pl is able to take both DDL1 and DDLm dictionaries. |
2011511.cif 2011511.hkl |
| 215562 | 2019-05-28 | trunk/cod/ Removing placeholder data items and redundant chemical names from the uploaded CIF files. Cleaning up the CHANGELOG. |
2011511.cif 2011511.hkl |
| 215451 | 2019-05-23 | trunk/cod/ Bugfix: removing all whitespace from depositor-submitted author name. |
2011511.cif 2011511.hkl |
| 215422 | 2019-05-22 | trunk/cod/ (antanas@echidna) Changed: slightly refactored the code. |
2011511.cif 2011511.hkl |
| 215420 | 2019-05-22 | trunk/cod/ (antanas@echidna) Fixed: corrected the quotes to trigger interpolation. |
2011511.cif 2011511.hkl |
| 215419 | 2019-05-22 | trunk/cod/ (antanas@echidna) Changed: added some logic to skip predeposition structures since they only contain rudimentary information. |
2011511.cif 2011511.hkl |
| 215417 | 2019-05-22 | trunk/cod/ (antanas@echidna) Changed: recording the basename of the program instead of the full path. |
2011511.cif 2011511.hkl |
| 215414 | 2019-05-22 | trunk/cod/ (antanas@echidna) Added: the dictionaries used by the 'post-commit-validation-update' hook. |
2011511.cif 2011511.hkl |
| 215413 | 2019-05-22 | trunk/cod/ (antanas@echidna) Changed: added the 'xml' directory to the 'repository-hooks' directory as an external repository. |
2011511.cif 2011511.hkl |
| 215412 | 2019-05-22 | trunk/cod/ (antanas@echidna) Fixed: corrected the database name in the 'post-commit-validation-update' hook. |
2011511.cif 2011511.hkl |
| 215411 | 2019-05-22 | trunk/ (antanas@echidna) Changed: updated the CHANGELOG. |
2011511.cif 2011511.hkl |
| 215410 | 2019-05-22 | trunk/cod/sql/ (antanas@echidna) Added: SQL statements for the creation of the 'validation_issues' table. |
2011511.cif 2011511.hkl |
| 215403 | 2019-05-22 | trunk/cod/. Bugfix: defining forgotten variable $parentValues. |
2011511.cif 2011511.hkl |
| 215401 | 2019-05-22 | trunk/ (antanas@echidna) Changed: replaced double quotes with single quotes with strings that do not need to be interpolated. |
2011511.cif 2011511.hkl |
| 215359 | 2019-05-21 | trunk/cod/ (antanas@echidna) Changed: updated the way COD ID is extracted from the error messages. |
2011511.cif 2011511.hkl |
| 215357 | 2019-05-21 | trunk/cod/ (antanas@echidna) Changed: updated the usage of the 'parse_message()' subroutine to conform to the changes in the interface of the subroutine. |
2011511.cif 2011511.hkl |
| 215356 | 2019-05-21 | trunk/cod/ (antanas@echidna) Changed: updated the options of the 'cif_validate' and 'cif_cod_check' scripts. |
2011511.cif 2011511.hkl |
| 215353 | 2019-05-21 | trunk/cod/tests/ Updating test outputs. |
2011511.cif 2011511.hkl |
| 215352 | 2019-05-21 | trunk/cod/ Replacing 'can not' -> 'cannot' in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 215350 | 2019-05-21 | trunk/cod/ Replacing 'can not' -> 'cannot' in PHP scripts. |
2011511.cif 2011511.hkl |
| 215265 | 2019-05-17 | trunk/cod/ Bugfix: taking input variables from $_REQUEST in edit-txt-cif.php, as both GET and POST might be submitted. |
2011511.cif 2011511.hkl |
| 215260 | 2019-05-17 | trunk/cod/ Bugfix: exit()'ing PHP scrips after relocating the user. |
2011511.cif 2011511.hkl |
| 215250 | 2019-05-17 | trunk/cod/ Increasing ToC levels in post-commit-dic2ikiwiki-update to 10. |
2011511.cif 2011511.hkl |
| 215195 | 2019-05-16 | trunk/cod/ COD ID number range has been changed for Dalton Transactions. |
2011511.cif 2011511.hkl |
| 215180 | 2019-05-15 | trunk/cod/ Adding a news item on the new mailing list. |
2011511.cif 2011511.hkl |
| 215015 | 2019-05-09 | trunk/cod/ Correctly recognizing exotic symbols in CIF data item names in mark_cif_tags(). |
2011511.cif 2011511.hkl |
| 215014 | 2019-05-09 | trunk/cod/ Moving the detection and marking up of CIF tags to function mark_cif_tags(). |
2011511.cif 2011511.hkl |
| 215008 | 2019-05-09 | trunk/cod/tests/ Filtering out branch-dependent source URLs from the output of optimade.pl. |
2011511.cif 2011511.hkl |
| 215007 | 2019-05-09 | trunk/cod/tests/ Hard-coding cif_raman dictionary version in a test case. |
2011511.cif 2011511.hkl |
| 214960 | 2019-05-07 | trunk/cod/ Describing latest developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 214959 | 2019-05-07 | trunk/cod/ Listing myself as a member of the COD AB, as per vote of acceptance of the AB. |
2011511.cif 2011511.hkl |
| 214849 | 2019-04-30 | trunk/cod/ Preventing PHP memory exhaustion in result.php by explicitly flushing the output after each write operation. |
2011511.cif 2011511.hkl |
| 214612 | 2019-04-12 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 214599 | 2019-04-11 | trunk/cod/tests/ Updating tests to test CIF validation. |
2011511.cif 2011511.hkl |
| 214598 | 2019-04-11 | trunk/cod/ Switching to 2.4 release of cod-tools under lib/ and repository-hooks/. |
2011511.cif 2011511.hkl |
| 214537 | 2019-04-08 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 214536 | 2019-04-08 | trunk/cod/ Setting relative CIF file path for cgi-bin/cif2ref.pl. |
2011511.cif 2011511.hkl |
| 214535 | 2019-04-08 | trunk/cod/ Bugfix: fixing incorrect PERL5LIB setting in cgi-bin/cif2ref.pl. |
2011511.cif 2011511.hkl |
| 214534 | 2019-04-08 | trunk/cod/ Fixing paths in cgi-bin/cif2ref.pl. |
2011511.cif 2011511.hkl |
| 214533 | 2019-04-08 | trunk/cod/ Updating cod-tools to rev. 6900 under lib/ and repository-hooks/. |
2011511.cif 2011511.hkl |
| 214520 | 2019-04-05 | cod/ Reintegrating branch 'andrius-DDLm-validation' (actually, just DDL1 validation) into trunk/cod/. |
2011511.cif 2011511.hkl |
| 214272 | 2019-03-21 | trunk/cod/tests/ Printing full relative paths of DIFF files being generated. |
2011511.cif 2011511.hkl |
| 214268 | 2019-03-21 | trunk/cod/tests/ Listing non-empty DIFFs under outputs/. Sorting the output. |
2011511.cif 2011511.hkl |
| 214265 | 2019-03-21 | trunk/cod/tests/ Printing output file names before printing their contents. |
2011511.cif 2011511.hkl |
| 214264 | 2019-03-21 | trunk/cod/tests/ Printing the generated outputs instead of messages 'generated successfully'. |
2011511.cif 2011511.hkl |
| 214263 | 2019-03-21 | trunk/cod/tests/ Making 'make listdiff' target print more standard output. |
2011511.cif 2011511.hkl |
| 214215 | 2019-03-20 | trunk/cod/tests/ Adding a simple test for edit-txt-cif.php. |
2011511.cif 2011511.hkl |
| 214185 | 2019-03-19 | trunk/cod/ Bugfix: $uploadedFile was left undefined in edit-txt-cif.php. |
2011511.cif 2011511.hkl |
| 214168 | 2019-03-18 | trunk/cod/ Surrounding checkboxes in search.html with <label>...</label> to make them easier to click. |
2011511.cif 2011511.hkl |
| 214167 | 2019-03-18 | trunk/cod/ Replacing 'structures' -> 'entries' where appropriate in search.html. |
2011511.cif 2011511.hkl |
| 214091 | 2019-03-12 | trunk/cod/ Bugfix: preventing blanking of user passwords in session variables after submission of "update depositor details" form. |
2011511.cif 2011511.hkl |
| 214090 | 2019-03-12 | trunk/cod/ Reducing duplicated code in check_user.php. |
2011511.cif 2011511.hkl |
| 214089 | 2019-03-12 | trunk/cod/tests/ Adding a test case showcasing a problem with updating depositor details trashing the stored values in $_SESSION. |
2011511.cif 2011511.hkl |
| 213976 | 2019-03-05 | trunk/cod/tests/ Adding a test case showcasing the way to put additional data items to a CIF file edited using cif-template.pl. |
2011511.cif 2011511.hkl |
| 213975 | 2019-03-05 | trunk/cod/ Not showing tags and loops not seen in the uploaded CIF file in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213882 | 2019-02-27 | trunk/cod/ Printing '_other' data item notices only for those data items that have such items in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213881 | 2019-02-27 | trunk/cod/ Merging no dictionary and dictionary by URL options. |
2011511.cif 2011511.hkl |
| 213880 | 2019-02-27 | trunk/cod/ Bugfix in lib/cif-template.js: '-- no data --' is a label, not a value. |
2011511.cif 2011511.hkl |
| 213879 | 2019-02-27 | trunk/cod/ Bugfix: fixing incorrect regular expressions in cif-template.js again. |
2011511.cif 2011511.hkl |
| 213878 | 2019-02-27 | trunk/cod/ Fixing regular expressions in lib/cif-template.js. |
2011511.cif 2011511.hkl |
| 213857 | 2019-02-26 | trunk/cod/ Starting to develop a subroutine to construct a DDLm dictionary for form-supplied CIF data items and loops in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213856 | 2019-02-26 | trunk/cod/tests/ Adding a test illustrating a common problem with cif-template.pl. I believe the problem is caused by incorrect interpretation of an HTML form form by Firefox, but I want to investigate it closer. |
2011511.cif 2011511.hkl |
| 213855 | 2019-02-26 | trunk/cod/tests/ Removing variable Subversion Id line from the output of cif-template_013.sh. |
2011511.cif 2011511.hkl |
| 213854 | 2019-02-26 | trunk/cod/ Canonicalising data items in the produced CIF file in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213853 | 2019-02-26 | trunk/cod/ Adding a button to return to the edit window in the preview window in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213852 | 2019-02-26 | trunk/cod/ Loading loop values to the textfields in the template. |
2011511.cif 2011511.hkl |
| 213851 | 2019-02-26 | trunk/cod/ Moving to implement read CIF loop handling in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213834 | 2019-02-25 | trunk/cod/ Canonicalising CIF data items upon CIF submission to cif-template.pl. |
2011511.cif 2011511.hkl |
| 213833 | 2019-02-25 | trunk/cod/ Displaying CIF loops upon CIF file entry in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213832 | 2019-02-25 | trunk/cod/ Not adding empty hidden fields if no real DDLm dictionaries are present in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213831 | 2019-02-25 | trunk/cod/tests/ Filtering out variable code line numbers from the tests for cif-template.pl. |
2011511.cif 2011511.hkl |
| 213830 | 2019-02-25 | trunk/cod/ If a dictionary is unknown, a provisional one is generated in cif-template.pl in order to allow the user to edit the uploaded CIF file. |
2011511.cif 2011511.hkl |
| 213829 | 2019-02-25 | trunk/cod/ Detecting loops without orders in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213828 | 2019-02-25 | trunk/cod/ Preventing cif-template.pl from failing upon the submission of loops without their data items. |
2011511.cif 2011511.hkl |
| 213827 | 2019-02-25 | trunk/cod/tests/ Adding tests for partial input in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213826 | 2019-02-25 | trunk/cod/ Simplifying CIF production in cif-template.pl. Adding a test. |
2011511.cif 2011511.hkl |
| 213825 | 2019-02-25 | trunk/cod/tests/ Adding a test case demonstrating failure to process syntactically incorrect CIF loops in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213824 | 2019-02-25 | trunk/cod/ Reworking the control flow in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213823 | 2019-02-25 | trunk/cod/ Fixing 'br' placement. |
2011511.cif 2011511.hkl |
| 213822 | 2019-02-25 | trunk/cod/ Bugfix: properly detected not submitted file in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213821 | 2019-02-25 | trunk/cod/ Providing a CIF file upload field in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213820 | 2019-02-25 | trunk/cod/ Adjusting paths of CSS and JS includes for cif-template.pl. |
2011511.cif 2011511.hkl |
| 213795 | 2019-02-22 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 213794 | 2019-02-22 | trunk/cod/ Producing wiki descriptions of dictionaries in the same level of directory tree. |
2011511.cif 2011511.hkl |
| 213793 | 2019-02-22 | trunk/cod/ Making post-commit-dic2ikiwiki-update process all dictionaries in the file tree. |
2011511.cif 2011511.hkl |
| 213792 | 2019-02-22 | trunk/cod/tests/ Updating test output cgi-outputs/cif-template.pl_002.out. |
2011511.cif 2011511.hkl |
| 213791 | 2019-02-22 | trunk/cod/tests/ Fixing cif_hod_0.0.0.dic dictionary URL. |
2011511.cif 2011511.hkl |
| 213786 | 2019-02-22 | trunk/cod/ Dropping svn:executable property from lib/cif-template.js. |
2011511.cif 2011511.hkl |
| 213765 | 2019-02-21 | trunk/cod/ Merging all indicated dictionaries in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213763 | 2019-02-21 | trunk/cod/ Merging submitted CIF file with the one constructed from POST-submitted fields in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213762 | 2019-02-21 | trunk/cod/ Moving CIF generation in a separate subroutine in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213761 | 2019-02-21 | trunk/cod/ Downloading dictionaries from _audit_conform.dict_location CIF data items if no dictionaries are supplied in POST parameters to cif-template.pl. |
2011511.cif 2011511.hkl |
| 213760 | 2019-02-21 | trunk/cod/ Moving Javascript code from cif-template.pl to cif-template.js. |
2011511.cif 2011511.hkl |
| 213759 | 2019-02-21 | trunk/cod/ Copying Javascript code from cgi-bin/cif-template.pl to lib/cif-template.js. |
2011511.cif 2011511.hkl |
| 213758 | 2019-02-21 | trunk/cod/ Loading values from supplied CIF file into HTML form fields in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213757 | 2019-02-21 | trunk/cod/ Preparing to read in CIF file templates in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213756 | 2019-02-21 | trunk/cod/ Properly parsing submitted CIF loops in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213755 | 2019-02-21 | trunk/cod/ Using standard CIF handling routines from COD::CIF::Tags::Manage in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213754 | 2019-02-21 | trunk/cod/tests/ Adding a test case for cif-template.pl with more than one dictionary. |
2011511.cif 2011511.hkl |
| 213753 | 2019-02-21 | trunk/cod/ Finishing implementing support for more than one dictionary in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213752 | 2019-02-21 | trunk/cod/ Moving towards accepting more than one dictionary in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213751 | 2019-02-21 | trunk/cod/ Moving dictionary download to a separate subroutine in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213750 | 2019-02-21 | trunk/cod/ Replacing the last ad-hoc HTML printing code piece with CGI::popup_menu(). |
2011511.cif 2011511.hkl |
| 213749 | 2019-02-21 | trunk/cod/tests/ Pretty-printing output XML for all cif-template.pl tests. |
2011511.cif 2011511.hkl |
| 213748 | 2019-02-21 | trunk/cod/ Using CGI::label() instead of ad-hoc HTML in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213747 | 2019-02-21 | trunk/cod/tests/ Updating test output cgi-outputs/cif-template.pl_001.out, which has changed due to reformatting. |
2011511.cif 2011511.hkl |
| 213746 | 2019-02-21 | trunk/cod/tests/ Adding a filter for cif-template.pl CGI tests to exclude variable Id. |
2011511.cif 2011511.hkl |
| 213745 | 2019-02-21 | trunk/cod/ Using popup_menu() instead of ad-hoc written HTML in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213744 | 2019-02-21 | trunk/cod/tests/ Adding one more test for cif-template.pl. |
2011511.cif 2011511.hkl |
| 213728 | 2019-02-20 | trunk/cod/ Some more HTML standartisations in cif-template.pl. |
2011511.cif 2011511.hkl |
| 213727 | 2019-02-20 | trunk/cod/ Using standard methods for HTML generation in cif-template.pl. Adding a test case. |
2011511.cif 2011511.hkl |
| 213726 | 2019-02-20 | trunk/cod/ Bugfix: a typo in cif-template.pl resulted in invalid HTML. Using 'xmllint' in the tests of the script in order to prevent regression. |
2011511.cif 2011511.hkl |
| 213725 | 2019-02-20 | trunk/cod/ Submitting the form in cif-template.pl to 'action=""'. |
2011511.cif 2011511.hkl |
| 213478 | 2019-02-04 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 213477 | 2019-02-04 | trunk/cod/ Implementing proper exception handling in edit-txt-cif.php. |
2011511.cif 2011511.hkl |
| 213476 | 2019-02-04 | trunk/cod/tests/ Remaking test case edit-txt-cif.php_007. Test output is not yet remade. |
2011511.cif 2011511.hkl |
| 213475 | 2019-02-04 | trunk/cod/tests/ Remaking test case edit-txt-cif.php_006. |
2011511.cif 2011511.hkl |
| 213474 | 2019-02-04 | trunk/cod/tests/ Remaking test case edit-txt-cif.php_005. |
2011511.cif 2011511.hkl |
| 213473 | 2019-02-04 | trunk/cod/tests/ Remaking test case edit-txt-cif.php_004. |
2011511.cif 2011511.hkl |
| 213472 | 2019-02-04 | trunk/cod/ Merging script save.php in edit-txt-cif.php. Removing the need to store bibliography fetch parameters in the session variables. Not all tests and exception handling are remade yet. |
2011511.cif 2011511.hkl |
| 213471 | 2019-02-04 | trunk/cod/tests/ Dropping test case edit-txt-cif.php_002 which was a bitwise copy of edit-txt-cif.php_001. |
2011511.cif 2011511.hkl |
| 213429 | 2019-02-01 | trunk/cod/tests/ Fixing post-commit-sql-update.filter to ignore variable paths and code line numbers. |
2011511.cif 2011511.hkl |
| 213428 | 2019-02-01 | trunk/ (antanas@echidna) Enhancement: replacing several distinct warning messages related to an invalid hold period with a single concise message that covers all of the cases. |
2011511.cif 2011511.hkl |
| 213427 | 2019-02-01 | trunk/cod/ Rewriting save.php using exceptions. |
2011511.cif 2011511.hkl |
| 213426 | 2019-02-01 | trunk/cod/tests/ Updating test output process_zip.php_002.out. |
2011511.cif 2011511.hkl |
| 213425 | 2019-02-01 | trunk/cod/tests/ Partially updating test output information_card.php_001.out. |
2011511.cif 2011511.hkl |
| 213424 | 2019-02-01 | trunk/cod/ Updating cod-tools to v2.3 under lib/ and repository-hooks/. |
2011511.cif 2011511.hkl |
| 213423 | 2019-02-01 | trunk/cod/ Describing recent developments in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 213422 | 2019-02-01 | trunk/cod/ Bugfix: preventing bibliography retrievals with empty DOI values. |
2011511.cif 2011511.hkl |
| 213421 | 2019-02-01 | trunk/ (antanas@echidna) Enhancement: updating the external web links in the "CIF Donators" section. |
2011511.cif 2011511.hkl |
| 213420 | 2019-02-01 | trunk/cod/ Bugfix: allowing percent sign ('%') in SMILES strings submitted to babel_search.pl. |
2011511.cif 2011511.hkl |
| 213405 | 2019-01-31 | trunk/cod/ Describing recent changes in the CHANGELOG. |
2011511.cif 2011511.hkl |
| 213404 | 2019-01-31 | trunk/cod/ Properly handling Unicode symbols in log message, supplied to cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 213297 | 2019-01-24 | trunk/cod/tests/ Updating test outputs for edit-txt-cif.php. |
2011511.cif 2011511.hkl |
| 213296 | 2019-01-24 | trunk/cod/tests/ Extending test case process_zip.php_003 to cover '-' file names. |
2011511.cif 2011511.hkl |
| 213295 | 2019-01-24 | trunk/cod/ Protecting against file path interpretation by Perl's open(2). |
2011511.cif 2011511.hkl |
| 213294 | 2019-01-24 | trunk/cod/tests/ Generating ZIP test input files on-the-fly for the rest of the tests. |
2011511.cif 2011511.hkl |
| 213293 | 2019-01-24 | trunk/cod/tests/ Generating ZIP test input files on-the-fly. |
2011511.cif 2011511.hkl |
| 213230 | 2019-01-21 | trunk/cod/ Revalidating CIF file after editing attached HKL file in order to get rid of persisting validation messages. |
2011511.cif 2011511.hkl |
| 213207 | 2019-01-18 | trunk/cod/ Fixing CSS for submit field in edit-txt-cif.php. |
2011511.cif 2011511.hkl |
| 213206 | 2019-01-18 | trunk/cod/ Making 'pubmed' and 'crossref' labels clickable in bibliography search. |
2011511.cif 2011511.hkl |
| 213205 | 2019-01-18 | trunk/cod/ Updating link to DOI website. |
2011511.cif 2011511.hkl |
| 213204 | 2019-01-18 | trunk/cod/ Revalidating CIF file after removal of HKL file. |
2011511.cif 2011511.hkl |
| 213203 | 2019-01-18 | trunk/cod/ Revalidating CIF file after the addition of HKL file in order to get rid of old powder diffraction check messages. |
2011511.cif 2011511.hkl |
| 213148 | 2019-01-16 | trunk/cod/ Updating CHANGELOG. |
2011511.cif 2011511.hkl |
| 213147 | 2019-01-16 | trunk/cod/tests/ Adding forgotten symbolic link. |
2011511.cif 2011511.hkl |
| 213146 | 2019-01-16 | trunk/cod/tests/ Renaming test cases: validate.php_500 -> validate.php_008 validate.php_501 -> validate.php_009 |
2011511.cif 2011511.hkl |
| 213145 | 2019-01-16 | cod/ Reintegrating branch 'andrius-fix-pdCIF-deposition' into trunk/cod/. |
2011511.cif 2011511.hkl |
| 213128 | 2019-01-16 | trunk/cod/tests/ Setting PATH environment variable in validate.php.dump. |
2011511.cif 2011511.hkl |
| 213077 | 2019-01-15 | trunk/cod/tests/ Filtering out variable path parts in '-F @hkl=' parameters for curl as printed by validate.php tests. |
2011511.cif 2011511.hkl |
| 213069 | 2019-01-15 | trunk/cod/ Adding a CHANGELOG. |
2011511.cif 2011511.hkl |
| 212877 | 2019-01-10 | trunk/cod/ Adding year 2019. |
2011511.cif 2011511.hkl |
| 212875 | 2019-01-09 | trunk/cod/ Implementing curator role in edit.php. Adding a test case. |
2011511.cif 2011511.hkl |
| 212874 | 2019-01-09 | trunk/cod/ Moving the detection of curator's role to common function is_curator() in login.php. Adding a test case for information_card.php. |
2011511.cif 2011511.hkl |
| 212873 | 2019-01-09 | trunk/cod/ Bugfix: incorrect table name was used to check for curator privilege in information_card.php. |
2011511.cif 2011511.hkl |
| 212846 | 2019-01-04 | trunk/cod/tests/ Filtering out absolute paths in PHP error messages. |
2011511.cif 2011511.hkl |
| 212808 | 2019-01-02 | trunk/cod/tests/ Extending php-tests/validate.php_007.setup to copy CIF files to their checked locations. |
2011511.cif 2011511.hkl |
| 212804 | 2019-01-02 | trunk/cod/ Setting character set for MySQL connection in index.php. |
2011511.cif 2011511.hkl |
| 212803 | 2019-01-02 | trunk/cod/ Bugfix: setting charset for MySQL connection in edit.php. |
2011511.cif 2011511.hkl |
| 212798 | 2018-12-27 | trunk/cod/ Simplifying pairing code a bit. |
2011511.cif 2011511.hkl |
| 212796 | 2018-12-27 | trunk/cod/tests/ Adding a test case performing CIF+HKL pairing. |
2011511.cif 2011511.hkl |
| 212790 | 2018-12-27 | trunk/cod/tests/ Removing variable dates from Subversion logs presented by information_card.php. |
2011511.cif 2011511.hkl |
| 212789 | 2018-12-27 | trunk/cod/tests/ Adding a test for deposition with HKL data. |
2011511.cif 2011511.hkl |
| 212788 | 2018-12-27 | trunk/cod/tests/ Adapting php-tests/validate.php_005.setup for test cases with HKL files. |
2011511.cif 2011511.hkl |
| 212780 | 2018-12-27 | trunk/cod/ Cleaning up redundant variables from validate.php. |
2011511.cif 2011511.hkl |
| 212775 | 2018-12-27 | trunk/cod/tests/ Removing absolute file names from the output of process_{cif,zip}.php. |
2011511.cif 2011511.hkl |
| 212772 | 2018-12-27 | trunk/cod/ Simplifying the code for incomplete deposition registration in validate.php. |
2011511.cif 2011511.hkl |
| 212771 | 2018-12-27 | trunk/cod/tests/ Stripping variable parts from the output of cif_cod_deposit. |
2011511.cif 2011511.hkl |
| 212770 | 2018-12-27 | trunk/cod/tests/ Creating table 'incomplete_depositions' by setup.setup. |
2011511.cif 2011511.hkl |
| 212769 | 2018-12-27 | trunk/cod/tests/ Finishing a test case covering the deposition. |
2011511.cif 2011511.hkl |
| 212768 | 2018-12-27 | trunk/cod/tests/ Reaching one step further in the deposition test case. |
2011511.cif 2011511.hkl |
| 212767 | 2018-12-27 | trunk/cod/tests/ Preparing for deposition testing: adding fake cif_cod_deposit script, protecting from accidental deposition to the real COD server. |
2011511.cif 2011511.hkl |
| 212766 | 2018-12-27 | trunk/cod/tests/ Starting to develop a test case covering the deposition process. |
2011511.cif 2011511.hkl |
| 212765 | 2018-12-27 | trunk/cod/tests/ Moving CIF inputs of test case validate.php_003 to tests/inputs/validate.php_003/. |
2011511.cif 2011511.hkl |
| 212764 | 2018-12-27 | trunk/cod/tests/ Adjusting the outputs of check_user.php after having ceased to use Google reCaptcha during the tests. |
2011511.cif 2011511.hkl |
| 212762 | 2018-12-27 | trunk/cod/tests/ Using empty Google reCaptcha keys in order to avoid using Google's service during automated tests. |
2011511.cif 2011511.hkl |
| 212733 | 2018-12-21 | trunk/cod/ Removing two unused functions from cif-functions.php. |
2011511.cif 2011511.hkl |
| 212732 | 2018-12-21 | trunk/cod/ Simplifying validation message handling code. |
2011511.cif 2011511.hkl |
| 212731 | 2018-12-21 | trunk/cod/ Moving validation message extraction from validate.php to a separate function in cif-functions.php. |
2011511.cif 2011511.hkl |
| 212730 | 2018-12-21 | trunk/cod/ Simplifying the detection of already finished validation processes. |
2011511.cif 2011511.hkl |
| 212729 | 2018-12-21 | trunk/cod/tests/ Updating test output php-outputs/validate.php_003.out. |
2011511.cif 2011511.hkl |
| 212728 | 2018-12-21 | trunk/cod/tests/ Fixing a bug in php-tests/validate.php_003.setup. |
2011511.cif 2011511.hkl |
| 212727 | 2018-12-21 | trunk/cod/ Simplifying one code construction in validate.php. |
2011511.cif 2011511.hkl |
| 212726 | 2018-12-21 | trunk/cod/ Replacing CODSESSION with session_name() in tpl/validate.php. |
2011511.cif 2011511.hkl |
| 212725 | 2018-12-21 | trunk/cod/ Using more standard way to check whether a session is active in information_card.php. |
2011511.cif 2011511.hkl |
| 212724 | 2018-12-21 | trunk/cod/tests/ Adding a test case for information_card.php preview of prepublication material. |
2011511.cif 2011511.hkl |
| 212723 | 2018-12-21 | trunk/cod/tests/ Adding a test case for information_card.php with a logged in user trying to view someone's else prepublication structure. |
2011511.cif 2011511.hkl |
| 212722 | 2018-12-21 | trunk/cod/tests/ Adding a test case for information_card.php with prepublication material. |
2011511.cif 2011511.hkl |
| 212721 | 2018-12-21 | trunk/cod/ Replacing hard-coded CODSESSION with session_name() in information_card.php. |
2011511.cif 2011511.hkl |
| 212720 | 2018-12-21 | trunk/cod/tests/ Updating test case validate.php_003. Outputs are not remade yet as not everything is working as expected yet. |
2011511.cif 2011511.hkl |
| 212719 | 2018-12-21 | trunk/cod/tests/ Updating test output php-outputs/information_card.php_004.out. |
2011511.cif 2011511.hkl |
| 212718 | 2018-12-21 | trunk/cod/tests/ Recreating 'smiles' table with php-tests/setup.setup. |
2011511.cif 2011511.hkl |
| 212717 | 2018-12-21 | trunk/cod/tests/ Adding RUN_TEST_FLAGS to each call of run_test. |
2011511.cif 2011511.hkl |
| 212716 | 2018-12-21 | trunk/cod/tests/ Adding command line option '--debug' to allow STDOUT and STDERR of setup/cleanup scripts to reach the console. |
2011511.cif 2011511.hkl |
| 212715 | 2018-12-21 | trunk/cod/tests/ Simplifying run_test a bit. |
2011511.cif 2011511.hkl |
| 212714 | 2018-12-21 | trunk/cod/tests/ Renaming 'run_test' option '--debug' to '--dry-run'. |
2011511.cif 2011511.hkl |
| 212713 | 2018-12-21 | trunk/cod/tests/ Adding bin-tests/setup.sed, a symlink to cgi-tests/cif-deposit.pl.sed, which is required to correctly set up the testing environment. |
2011511.cif 2011511.hkl |
| 212712 | 2018-12-21 | trunk/cod/tests/ Updating test output php-outputs/validate.php_004.out. |
2011511.cif 2011511.hkl |
| 212711 | 2018-12-21 | trunk/cod/tests/ Updating test output php-outputs/upload.php_004.out. |
2011511.cif 2011511.hkl |
| 212710 | 2018-12-21 | trunk/cod/tests/ Updating test output php-outputs/check_user.php_004.out. |
2011511.cif 2011511.hkl |
| 212709 | 2018-12-21 | trunk/cod/tests/ Updating test outputs of optimade.pl. |
2011511.cif 2011511.hkl |
| 212692 | 2018-12-20 | trunk/cod/tests/ Renaming test case validate_select.php_004 to upload.php_008, as validate_select.php is fully incorporated into upload.php now. |
2011511.cif 2011511.hkl |
| 212691 | 2018-12-20 | trunk/cod/tests/ Renaming test case validate_select.php_003 to upload.php_007, as validate_select.php is fully incorporated into upload.php now. |
2011511.cif 2011511.hkl |
| 212690 | 2018-12-20 | trunk/cod/tests/ Renaming test case validate_select.php_002 to upload.php_006, as validate_select.php is fully incorporated into upload.php now. |
2011511.cif 2011511.hkl |
| 212689 | 2018-12-20 | trunk/cod/tests/ Renaming test case validate_select.php_001 to upload.php_005, as validate_select.php is fully incorporated into upload.php now. |
2011511.cif 2011511.hkl |
| 212688 | 2018-12-20 | trunk/cod/tests/ Adding missing variable $pass_reset_string_life to php-tests/setup.config. Updating test outputs for remind_email.php. |
2011511.cif 2011511.hkl |
| 212687 | 2018-12-20 | trunk/cod/tests/ Updating test outputs to resolve tiny differences due to formatting or changed links. |
2011511.cif 2011511.hkl |
| 212686 | 2018-12-20 | trunk/cod/tests/ Patching bootstrap.php to turn off session.use_trans_sid, which keeps appending CODSESSION to every link. |
2011511.cif 2011511.hkl |
| 212683 | 2018-12-20 | trunk/cod/tests/ Filtering variable paths from the outputs of process_zip.php. |
2011511.cif 2011511.hkl |
| 212682 | 2018-12-20 | trunk/cod/tests/ Adding $db_title variable to php-tests/setup.config. |
2011511.cif 2011511.hkl |
| 212681 | 2018-12-20 | trunk/cod/tests/ Adapting dependency list for Ubuntu-18.04. |
2011511.cif 2011511.hkl |
| 212679 | 2018-12-20 | trunk/cod/ Bugfix: get_bibliography_fetch_command() worked incorrectly with CIF v2.0 due to surplus quote. |
2011511.cif 2011511.hkl |
| 212516 | 2018-12-11 | trunk/cod/ Replacing mergesort via PHP build-in usort to simplify the code. |
2011511.cif 2011511.hkl |
| 212504 | 2018-12-10 | trunk/cod/ Bugfix: journal name is now stored directly in $_SESSION. |
2011511.cif 2011511.hkl |
| 212503 | 2018-12-10 | trunk/cod/ Removing unused variable 'error_message' from tpl/upload.php. |
2011511.cif 2011511.hkl |
| 212501 | 2018-12-10 | trunk/cod/ Removing the last occurrences of direct reference to view.php in links. Replacing with RESTful links. |
2011511.cif 2011511.hkl |
| 212500 | 2018-12-10 | trunk/cod/ Dropping function display_error() from view.php. |
2011511.cif 2011511.hkl |
| 212499 | 2018-12-10 | trunk/cod/ Bugfix: defining variable for file contents in view.php. |
2011511.cif 2011511.hkl |
| 212498 | 2018-12-10 | trunk/cod/ Bugfix: view.php did not terminate after an exception. |
2011511.cif 2011511.hkl |
| 212497 | 2018-12-10 | trunk/cod/ Appending 'Site administrator is notified' to every server-side exception messages. |
2011511.cif 2011511.hkl |
| 212496 | 2018-12-10 | trunk/cod/ Rewriting the rest of view.php in try {...} catch {...} style. |
2011511.cif 2011511.hkl |
| 212495 | 2018-12-10 | trunk/cod/ Rewriting initial precondition checking for view.php in try {...} catch {...} style. |
2011511.cif 2011511.hkl |
| 212494 | 2018-12-10 | trunk/cod/ Adding new exception class ServerException, which reports every raised exception to the error log. |
2011511.cif 2011511.hkl |
| 212477 | 2018-12-07 | trunk/cod/ Switching from view.php?f=<file>&CODSESSION=<session> to <file>?CODSESSION=<session> in a couple more places in information_card.php. |
2011511.cif 2011511.hkl |
| 212476 | 2018-12-07 | trunk/cod/ Replacing a pair of occurrences of 'CIF' via $EXT. |
2011511.cif 2011511.hkl |
| 212475 | 2018-12-07 | trunk/cod/ Ceasing to append SID for unregistered sessions in information_card.php. |
2011511.cif 2011511.hkl |
| 212474 | 2018-12-07 | trunk/cod/ Using nice RESTful links for the downloading of CIF and HKL files in information_card.php. |
2011511.cif 2011511.hkl |
| 212473 | 2018-12-07 | trunk/cod/ Rewriting requests for CIF/HKL files with CODSESSION using view.php. |
2011511.cif 2011511.hkl |
| 212472 | 2018-12-07 | trunk/cod/ Bugfix: enabling prepublication HKL file download in information_card.php. |
2011511.cif 2011511.hkl |
| 212471 | 2018-12-07 | trunk/cod/ Fixing the logic of author name and e-mail entry in upload.php. |
2011511.cif 2011511.hkl |
| 212470 | 2018-12-07 | trunk/cod/ Displaying the maximum hold period in the parameter input form in upload.php. |
2011511.cif 2011511.hkl |
| 212469 | 2018-12-07 | trunk/cod/ Disallowing hold periods longer than 12 months. |
2011511.cif 2011511.hkl |
| 212468 | 2018-12-07 | trunk/cod/ Bugfix: author details were never preloaded and checked in upload.php due to a bug in condition. |
2011511.cif 2011511.hkl |
| 212467 | 2018-12-07 | trunk/cod/ Requiring author name and e-mail to be non-empty in upload.php. |
2011511.cif 2011511.hkl |
| 212466 | 2018-12-07 | trunk/cod/ Requiring entered hold period value to be non-empty in upload.php. |
2011511.cif 2011511.hkl |
| 212465 | 2018-12-07 | trunk/cod/ Bugfix: correcting the conditional to detect empty hold periods. |
2011511.cif 2011511.hkl |
| 212464 | 2018-12-07 | trunk/cod/ Not allowing uploads without specifying the hold period in upload.php. |
2011511.cif 2011511.hkl |
| 212463 | 2018-12-07 | trunk/cod/ Bugfix: variable $hold_period is not used anymore in upload.php. |
2011511.cif 2011511.hkl |
| 212462 | 2018-12-07 | trunk/cod/ Modifying a message reporting incorrect hold period value. |
2011511.cif 2011511.hkl |
| 212461 | 2018-12-07 | trunk/cod/ Checking the value of supplied hold period in upload.php. |
2011511.cif 2011511.hkl |
| 212460 | 2018-12-07 | trunk/cod/ Replacing 'CIF' with $struct_file_extension in tpl/validate.php. |
2011511.cif 2011511.hkl |
| 212459 | 2018-12-07 | cod/ Reintegrating branch 'andrius-cod-PHP-simplification' into trunk/cod/. |
2011511.cif 2011511.hkl |
| 212440 | 2018-12-07 | trunk/cod/ Both GET and POST are to be handled by upload.php. |
2011511.cif 2011511.hkl |
| 212439 | 2018-12-07 | trunk/cod/ Copying in parts of code from validate_select.php as initial steps to to merge the aforementioned script into upload.php. |
2011511.cif 2011511.hkl |
| 212438 | 2018-12-07 | trunk/cod/ Moving exception definitions to separate PHP file, which is included by bootstrap.php. |
2011511.cif 2011511.hkl |
| 212412 | 2018-12-06 | trunk/cod/ Cleaning up tpl/upload.php of unused code. |
2011511.cif 2011511.hkl |
| 212411 | 2018-12-06 | trunk/cod/ Finishing rewriting upload.php using exceptions. |
2011511.cif 2011511.hkl |
| 212409 | 2018-12-06 | trunk/cod/ Bugfix: value of $uploadType was used before its assignment in upload.php. |
2011511.cif 2011511.hkl |
| 212408 | 2018-12-06 | trunk/cod/ Moving file upload error detection in upload.php inside try { ... } block. |
2011511.cif 2011511.hkl |
| 212406 | 2018-12-06 | trunk/cod/ Moving POST parameter handling inside try { ... } in upload.php. |
2011511.cif 2011511.hkl |
| 212405 | 2018-12-06 | trunk/cod/ Cleaning up the code in upload.php. |
2011511.cif 2011511.hkl |
| 212404 | 2018-12-06 | trunk/cod/ Rewriting part of upload.php in try { ... } catch { ... } style. |
2011511.cif 2011511.hkl |
| 212377 | 2018-12-05 | trunk/cod/ Bugfix: head and foot apparently is included in tpl/edit.php. |
2011511.cif 2011511.hkl |
| 212376 | 2018-12-05 | trunk/cod/ Bugfix: including the forgotten tpl/edit.php on exception in edit.php. |
2011511.cif 2011511.hkl |
| 212375 | 2018-12-05 | trunk/cod/ Switching to try {...} catch {...} based error handling in hold period handling code in edit.php. |
2011511.cif 2011511.hkl |
| 212374 | 2018-12-05 | trunk/cod/ Displaying CIF file name in Fobs upload page. |
2011511.cif 2011511.hkl |
| 212353 | 2018-12-04 | cod/ Reintegrating branch 'andrius-double-opt-in' into trunk/cod/. |
2011511.cif 2011511.hkl |
| 212351 | 2018-12-04 | trunk/cod/ ENVI files might be also produced by OSes where \r or \r\n are the line termination sequences. Therefore, adjusting the 'magic' file. |
2011511.cif 2011511.hkl |
| 212322 | 2018-12-04 | trunk/cod/ Replacing one occurrence of 'COD' with $db_ABBRV, reducing superfluous indentation. |
2011511.cif 2011511.hkl |
| 212321 | 2018-12-04 | trunk/cod/ Introducing a variable controlling long title of the database. |
2011511.cif 2011511.hkl |
| 212285 | 2018-12-03 | trunk/cod/ Adding magic rule file for program 'file' to recognise ENVI header and JCAMP-DX files. |
2011511.cif 2011511.hkl |
| 211943 | 2018-11-14 | trunk/cod/ Bugfix: cif_split prints extracted data block names to STDERR along with real error messages, therefore these have to be separated in order to detect possible errors emitted by cif_split. |
2011511.cif 2011511.hkl |
| 211925 | 2018-11-13 | trunk/cod/ Using more standard way to get image from PHP Captcha. |
2011511.cif 2011511.hkl |
| 211920 | 2018-11-13 | trunk/cod/ Importing explicitly PEAR.php, as this seems to be required on Debian 9 machines. |
2011511.cif 2011511.hkl |
| 211919 | 2018-11-13 | trunk/cod/ Setting PHP configuration variable 'session.use_only_cookies' to 0 in order to bring back transparent session IDs. |
2011511.cif 2011511.hkl |
| 211525 | 2018-10-18 | trunk/cod/ Bugfix: changing statuses only of those CIF files that were subjected to CIF-HKL pairing. |
2011511.cif 2011511.hkl |
| 210542 | 2018-09-07 | trunk/cod/ (antanas@echidna) Bug fix: removing the debug print that was accidentally left in. |
2011511.cif 2011511.hkl |
| 209990 | 2018-08-20 | trunk/cod/ Reading STDOUT first in order to avoid a deadlock in view.php. |
2011511.cif 2011511.hkl |
| 209987 | 2018-08-20 | trunk/cod/ Closing previously unclosed pipe in view.php to avoid deadlocks. |
2011511.cif 2011511.hkl |
| 209985 | 2018-08-20 | trunk/cod/ Explicitly closing MySQL connections when they are no longer needed in view.php. |
2011511.cif 2011511.hkl |
| 209979 | 2018-08-20 | trunk/cod/ Ceasing to cache the output of 'svn cat <CIF file>' in view.php in order to fix the problem with exhausted memory. |
2011511.cif 2011511.hkl |
| 209978 | 2018-08-20 | trunk/cod/tests/ Adding two more test cases for view.php. |
2011511.cif 2011511.hkl |
| 209977 | 2018-08-20 | trunk/cod/tests/ Fixing test case view.php_001. |
2011511.cif 2011511.hkl |
| 209976 | 2018-08-20 | trunk/cod/tests/ Moving Subversion repositories from tmp/cgi-autotests/ to tmp/. |
2011511.cif 2011511.hkl |
| 209975 | 2018-08-20 | trunk/cod/tests/ Adding another test case for view.php. Currently, both test cases pass, albeit view.php_001 should not. |
2011511.cif 2011511.hkl |
| 209974 | 2018-08-20 | trunk/cod/tests/ Adding a simple test case for view.php. |
2011511.cif 2011511.hkl |
| 209973 | 2018-08-20 | trunk/cod/ Fixing spelling in error messages and comments of view.php. |
2011511.cif 2011511.hkl |
| 208948 | 2018-07-10 | trunk/ (antanas@echidna) Bug fix: correcting the link to the top of the page. |
2011511.cif 2011511.hkl |
| 208947 | 2018-07-10 | trunk/ (antanas@echidna) Refactoring: restructuring the text a bit and updating the external links. |
2011511.cif 2011511.hkl |
| 208946 | 2018-07-10 | trunk/ (antanas@echidna) Refactoring: cleaning up the HTML code for it to become XHTML compliant. |
2011511.cif 2011511.hkl |
| 208943 | 2018-07-10 | trunk/ (antanas@echidna) Refactoring: updating the html code to be a bit more XHTML compliant. |
2011511.cif 2011511.hkl |
| 208924 | 2018-07-09 | trunk/ (antanas@echidna) Refactoring: removing references to Java applets. |
2011511.cif 2011511.hkl |
| 208922 | 2018-07-09 | trunk/ (antanas@echidna) Refactoring: removing Java applets that are no longer used. |
2011511.cif 2011511.hkl |
| 208921 | 2018-07-09 | trunk/ (antanas@echidna) Enhancement: adding the missing 'the' article. |
2011511.cif 2011511.hkl |
| 208920 | 2018-07-09 | trunk/ (antanas@echidna) Refactoring: removing links to non-functional Java applets. |
2011511.cif 2011511.hkl |
| 208919 | 2018-07-09 | trunk/ (antanas@echidna) Bug fix: resolving the log message duplication bug. |
2011511.cif 2011511.hkl |
| 208918 | 2018-07-09 | trunk/cod/ Fixing an issue with reverse merge in case of deposition failure in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 208917 | 2018-07-09 | trunk/ (antanas@echidna) Refactoring: removing an unused subroutine from the validate_select.php. |
2011511.cif 2011511.hkl |
| 208916 | 2018-07-09 | trunk/cod/ Bugfix: stripping trailing slashes from Subversion repository URLs as trailing slashes seem to cause failures of SVN::Client. |
2011511.cif 2011511.hkl |
| 208915 | 2018-07-09 | trunk/ (antanas@echidna) Refactoring: migrating to using 'mysqli_set_charset' function instead of directly executing the 'SET CHARACTER SET' statement. |
2011511.cif 2011511.hkl |
| 208914 | 2018-07-09 | trunk/ (antanas@echidna) Refactoring: removing some code that never get executed due to the 'magic_quotes_gpc' configuration option being removed in PHP 5.4. |
2011511.cif 2011511.hkl |
| 208878 | 2018-07-06 | trunk/cod/ (antanas@kurmis) Bug fix: adding css import and assigning the correct class to the paragraph in the criticalError function. |
2011511.cif 2011511.hkl |
| 208876 | 2018-07-06 | trunk/ (antanas@kurmis) Refactoring: renaming the 'critical_error' function to 'criticalError', documenting it properly and adding several FIXME and TODO comments. |
2011511.cif 2011511.hkl |
| 208872 | 2018-07-06 | trunk/ (antanas@kurmis) Refactoring: moving the ID-related SQL clause construction logic into separate "buildIdSqlClause" function. |
2011511.cif 2011511.hkl |
| 208871 | 2018-07-06 | trunk/cod/dependencies/ (antanas@kurmis) Enhancement: adding 'php-mysql' to the dependency list. |
2011511.cif 2011511.hkl |
| 208861 | 2018-07-05 | trunk/ (antanas@echidna) Refactoring: moving ID splitting logic into a separate subroutine. |
2011511.cif 2011511.hkl |
| 208855 | 2018-07-05 | trunk/cod/tpl/ (antanas@echidna) Bug fix: removing several parts of the code that were accidentally committed. |
2011511.cif 2011511.hkl |
| 208852 | 2018-07-05 | trunk/cod/ Fixing syntax errors in tpl/validate_select.php. |
2011511.cif 2011511.hkl |
| 208850 | 2018-07-05 | trunk/cod/tests/ Updating outputs of cif-deposit.pl tests. |
2011511.cif 2011511.hkl |
| 208849 | 2018-07-05 | trunk/cod/ Rewriting the code which handles unsuccessful depositions in cif-deposit.pl using the SVN::Client Perl module. |
2011511.cif 2011511.hkl |
| 208845 | 2018-07-05 | trunk/ (antanas@echidna) Refactoring: removing the debug print statement. |
2011511.cif 2011511.hkl |
| 208844 | 2018-07-05 | trunk/ (antanas@echidna) Refactoring: moving some of the Z(') logic handling code into a separate subroutine. |
2011511.cif 2011511.hkl |
| 208843 | 2018-07-05 | trunk/ (antanas@echidna) Refactoring: moving some of the common integer handling logic into a function. |
2011511.cif 2011511.hkl |
| 208833 | 2018-07-04 | trunk/ (antanas@echidna) Refactoring: moving the rest of the chemical element handling code into separate subroutines. |
2011511.cif 2011511.hkl |
| 208832 | 2018-07-04 | trunk/cod/ Using Perl Subversion bindings in a couple more places in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 208831 | 2018-07-04 | trunk/cod/ Bugfix: apparently, svn_authorise() in cif-deposit.pl used interactive mode. |
2011511.cif 2011511.hkl |
| 208830 | 2018-07-04 | trunk/cod/ (antanas@echidna) Refactoring: moving some of the element presence handling code into a function. |
2011511.cif 2011511.hkl |
| 208829 | 2018-07-04 | trunk/ (antanas@echidna) Enhancement: refactoring some header logic into a separate subroutine in the result.php script. |
2011511.cif 2011511.hkl |
| 208828 | 2018-07-04 | trunk/cod/ Removing unused subroutine process_svn_commit_output() from cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 208825 | 2018-07-04 | trunk/cod/ Surrounding 'svn mkdir' command with eval {} in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 208822 | 2018-07-04 | trunk/cod/ Rewriting the code committing to the Subversion repository in cif-deposit.pl using SVN::Client. |
2011511.cif 2011511.hkl |
| 208820 | 2018-07-04 | trunk/cod/ Moving code for SVN::Client connection opening to svn_authorise() in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 208819 | 2018-07-04 | trunk/cod/ Reordering module imports in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 208818 | 2018-07-04 | trunk/cod/ Rewriting cif-deposit.pl's prepare_local_working_copy() via SVN::Client instead of using Subversion's command-line interface. This change is an initial part of migrating away from Subversion's command-line interface usage in order to increase the stability and remove ad-hoc code. |
2011511.cif 2011511.hkl |
| 208799 | 2018-07-03 | trunk/cod/tests/ Generating the .mysql.client.conf file automatically. |
2011511.cif 2011511.hkl |
| 208798 | 2018-07-03 | trunk/cod/tests/ Adding a mechanism to check whether testing system is able to access the MySQL server. |
2011511.cif 2011511.hkl |
| 208795 | 2018-07-03 | trunk/cod/tests/ Removing obsolete code to install the dependencies. Relying on dependencies/ scripts instead, as done in our other projects. |
2011511.cif 2011511.hkl |
| 208781 | 2018-07-03 | trunk/cod/tpl/ (antanas@echidna) Bug fix: correcting the text area content. |
2011511.cif 2011511.hkl |
| 208759 | 2018-07-02 | trunk/cod/tests/ Updating test output cgi-outputs/cif-template.pl_001.out. |
2011511.cif 2011511.hkl |
| 208758 | 2018-07-02 | trunk/cod/ (antanas@echidna) Bug fix: correcting a malformed regex. |
2011511.cif 2011511.hkl |
| 208754 | 2018-07-02 | trunk/cod/ Adding a RewriteRule for cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 208752 | 2018-07-02 | trunk/cod/ As cif-template.pl will be called without 'cgi-bin' infix, paths of CSS have to be adjusted. |
2011511.cif 2011511.hkl |
| 208751 | 2018-07-02 | trunk/cod/ Leaving out the 'action' attribute from HTML forms generated by cif-template.pl: by default, forms submit the data to the same script. |
2011511.cif 2011511.hkl |
| 208747 | 2018-07-02 | trunk/cod/ (antanas@echidna) Enhancement: updating the list of error messages filtered by the 'cif_cod_check' script in order to prepare for the changes in the 'cod-tools'. |
2011511.cif 2011511.hkl |
| 208720 | 2018-06-29 | trunk/ (antanas@echidna) Refactoring: rewriting the tpl/validate_select.php template in a more functional manner. |
2011511.cif 2011511.hkl |
| 208697 | 2018-06-28 | trunk/cod/tpl/ (antanas@echidna) Refactoring: moing some of the code into self-contained subroutines. |
2011511.cif 2011511.hkl |
| 208683 | 2018-06-27 | trunk/cod/tpl/ (antanas@kurmis) Refactoring: updating the text of several warning messages. |
2011511.cif 2011511.hkl |
| 208665 | 2018-06-27 | trunk/cod/ (antanas@echidna) Bug fix: adding the 'the' article in front of the database name. |
2011511.cif 2011511.hkl |
| 208664 | 2018-06-27 | trunk/cod/ (antanas@echidna) Refactoring: updating cod-tools to rev. 6249 under repository-hooks/. |
2011511.cif 2011511.hkl |
| 208635 | 2018-06-26 | trunk/ (antanas@echidna) Refactoring: migrating to the recommended way of switching between Java and JS versions of jmol. Removing lib/jmol since it is no longer needed. |
2011511.cif 2011511.hkl |
| 208634 | 2018-06-26 | trunk/cod/ (antanas@echidna) Enhancement: adding a symlink to the used jsmol version. |
2011511.cif 2011511.hkl |
| 208633 | 2018-06-26 | trunk/cod/ (antanas@echidna) Enhancement: updating the way the jsmol applet is called. |
2011511.cif 2011511.hkl |
| 208632 | 2018-06-26 | trunk/cod/ (antanas@echidna) Enhancement: adding jsmol-14.29.17 and creating a jsmol symlink. |
2011511.cif 2011511.hkl |
| 208631 | 2018-06-26 | trunk/cod/ (antanas@echidna) Refactoring: moving jsmol into subdirectory named based on its version. |
2011511.cif 2011511.hkl |
| 208630 | 2018-06-26 | trunk/cod/cgi-bin/ (antanas@echidna) Enhancement: adding the 'db_cif_prefix' parameter which stores the CIF data name prefix of the 'cif-deposit.pl'. |
2011511.cif 2011511.hkl |
| 208629 | 2018-06-26 | trunk/cod/ (antanas@echidna) Enhancement: updating the 'cod-tools' external dependency to revision 6240. |
2011511.cif 2011511.hkl |
| 208588 | 2018-06-22 | trunk/ (antanas@echidna) Refactoring: moving some more code into subroutines. |
2011511.cif 2011511.hkl |
| 208571 | 2018-06-21 | trunk/ (antanas@echidna) Refactoring: moving the newline symbol removal code into a separate subroutine. |
2011511.cif 2011511.hkl |
| 208566 | 2018-06-20 | trunk/cod/ Implementing a configuration variable 'db_abbrv' for cif-deposit.pl to control names of CIF tags. Fixing a bug in determine_cif_hkl_relations() of cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 208539 | 2018-06-20 | trunk/ (antanas@echidna) Enhancement: adding proper comments for the recently introduced extract_field_data() and get_db_field_data() subroutines. |
2011511.cif 2011511.hkl |
| 208538 | 2018-06-20 | trunk/ (antanas@echidna) Refactoring: updating a log message to use a shorted name. |
2011511.cif 2011511.hkl |
| 208537 | 2018-06-20 | trunk/ (antanas@echidna) Refactoring: removing some of the debug prints. |
2011511.cif 2011511.hkl |
| 208536 | 2018-06-20 | trunk/ Refactoring: moving some of the code into the get_db_field_data() subroutine. |
2011511.cif 2011511.hkl |
| 208503 | 2018-06-19 | cod/ (antanas@kurmis) Bug fix: correcting several more syntactic errors in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 208496 | 2018-06-19 | cod/ (antanas@kurmis) Bug fix: adding a missing closing parenthesis in the cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 208495 | 2018-06-19 | trunk/ (antanas@echidna) Enhancement: updating several typos in the recently added is_authenticated_user() subroutine and updating the comments accordingly. |
2011511.cif 2011511.hkl |
| 208494 | 2018-06-19 | trunk/ (antanas@echidna) Refactoring some of the code into the is_authenticated_user() subroutine. |
2011511.cif 2011511.hkl |
| 208493 | 2018-06-19 | trunk/ (antanas@echidna) Bug fix: correcting the spelling of the word 'identifier'. |
2011511.cif 2011511.hkl |
| 208492 | 2018-06-19 | trunk/cod/cgi-bin/ (antanas@echidna) Refactoring: adding return statements to multiple subroutines and rewritting the 'process_svn_commit_output' subroutine in a less complex way. |
2011511.cif 2011511.hkl |
| 208491 | 2018-06-19 | trunk/ Refactoring: generalising the usage of the get_source_data_block_name subroutine in the 'cif-deposit.pl' script. |
2011511.cif 2011511.hkl |
| 208355 | 2018-06-13 | trunk/cod/ Adding 'data_returned' and 'more_data_available' into meta fields of base URI info output of OPTiMaDe. |
2011511.cif 2011511.hkl |
| 208352 | 2018-06-13 | trunk/cod/ Adding 'data_returned' and 'more_data_available' into meta fields of structure listing info output of OPTiMaDe. |
2011511.cif 2011511.hkl |
| 208279 | 2018-06-12 | trunk/cod/ Adding /meta/more_data_available parameter. |
2011511.cif 2011511.hkl |
| 208278 | 2018-06-12 | trunk/cod/ Renaming "entry" parameter to "type" according to the specs. |
2011511.cif 2011511.hkl |
| 208190 | 2018-06-07 | trunk/cod/ Taking prefix for '_<db>_implementation' from database prefix. |
2011511.cif 2011511.hkl |
| 208189 | 2018-06-07 | trunk/cod/ Taking prefix for '_<db>_unreduced_formula' from database prefix. |
2011511.cif 2011511.hkl |
| 208188 | 2018-06-07 | trunk/cod/ Ceasing to append SVN revision to links if it is not defined. |
2011511.cif 2011511.hkl |
| 208187 | 2018-06-07 | trunk/cod/ Putting all data into the output of OPTiMaDe structure query. |
2011511.cif 2011511.hkl |
| 207870 | 2018-05-21 | trunk/cod/ Reordering style definitions for 'News' table in order to get the table styled right. |
2011511.cif 2011511.hkl |
| 207864 | 2018-05-20 | trunk/cod/ Adding citation of the recent SMILES paper. |
2011511.cif 2011511.hkl |
| 207793 | 2018-05-15 | trunk/cod/ Making database title configurable in cgi-bin/optimade.pl. |
2011511.cif 2011511.hkl |
| 207792 | 2018-05-15 | trunk/cod/ Taking database prefix from database description XML file. |
2011511.cif 2011511.hkl |
| 207791 | 2018-05-15 | trunk/cod/ Using the versionless database-description.xml in cgi-bin/optimade.pl. |
2011511.cif 2011511.hkl |
| 207163 | 2018-03-28 | trunk/cod/ Fixing a typo in cgi-bin/index.pl. |
2011511.cif 2011511.hkl |
| 206987 | 2018-03-16 | trunk/cod/ Implementing the display of SMILES strings from MySQL table 'smiles' in the information_card.php. |
2011511.cif 2011511.hkl |
| 206726 | 2018-03-01 | trunk/cod/ Renaming a couple more occurrences of variable $codid to $id in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 206725 | 2018-03-01 | trunk/cod/ Renaming occurrences of variable $codid to $id in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 206724 | 2018-03-01 | trunk/cod/ Rewriting select_database_id_range() in more concise and readable form. |
2011511.cif 2011511.hkl |
| 206723 | 2018-03-01 | trunk/cod/ Renaming select_COD_number_range() to select_database_id_range() in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 206658 | 2018-02-26 | trunk/cod/ Moving code to fetch bibliography from PubMed and Crossref from edit-txt-cif.php to a separate function of cif-functions.php in order to ease the testing. Adding a test case. |
2011511.cif 2011511.hkl |
| 206657 | 2018-02-26 | trunk/cod/tests/ Updating test case cases/cif-template_001.sh. |
2011511.cif 2011511.hkl |
| 206656 | 2018-02-26 | trunk/cod/tests/ Modifying 'make listdiff' target in Makelocal-test to look for diffs under outputs/. |
2011511.cif 2011511.hkl |
| 206655 | 2018-02-26 | trunk/cod/ Simplifying code of determine_cif_hkl_relations() subroutine of cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 206654 | 2018-02-26 | trunk/cod/ Removing unused variable from cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 206653 | 2018-02-26 | trunk/cod/ Moving the code to prepare datablock-like data structure out of cifvalues output to a separate subroutine in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 206629 | 2018-02-23 | trunk/cod/ Bugfix: adding apparently missing 'next' instruction in determine_cif_hkl_relations() of cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 206628 | 2018-02-23 | trunk/cod/ Simplifying some code constructions in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 206627 | 2018-02-23 | trunk/cod/ Using COD::CIF::Data::get_source_data_block_name() to get the original data block source name in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 206626 | 2018-02-23 | trunk/cod/ Updating cod-tools to rev. 6009 under lib/. |
2011511.cif 2011511.hkl |
| 206625 | 2018-02-23 | trunk/cod/ Switching to more standard CIF data block layout construction from cifvalues output. |
2011511.cif 2011511.hkl |
| 206621 | 2018-02-23 | trunk/cod/ Bugfix: output of PHPs escapeshellarg() can not be placed inside single quotes. |
2011511.cif 2011511.hkl |
| 206620 | 2018-02-23 | trunk/cod/ Correcting the capitalisation of Crossref and PubMed. |
2011511.cif 2011511.hkl |
| 206619 | 2018-02-23 | trunk/cod/ Escaping shell arguments in the place of the use for bibliography search. |
2011511.cif 2011511.hkl |
| 206618 | 2018-02-23 | trunk/cod/ Bugfix: PubMed bibliography search was failing due to double URL-encoding of DOI parameter. |
2011511.cif 2011511.hkl |
| 206597 | 2018-02-22 | trunk/cod/tests/ Updating tests for post-commit-dic2ikiwiki-update. |
2011511.cif 2011511.hkl |
| 206596 | 2018-02-22 | trunk/cod/ Simplifying database property description in Mysql_fp.pm. |
2011511.cif 2011511.hkl |
| 206592 | 2018-02-22 | trunk/cod/ Replacing SQL queries 'SET NAMES utf8' with mysqli_set_charset() function calls as direct query 'SET NAMES utf8' is not recognized as charset change by mysqli_real_escape_string() (see http://php.net/manual/en/mysqlinfo.concepts.charset.php). |
2011511.cif 2011511.hkl |
| 206591 | 2018-02-22 | trunk/cod/ Bugfix: setting charset for MySQL connection to UTF-8 in validate_select.php to acquire correctly encoded characters. |
2011511.cif 2011511.hkl |
| 206590 | 2018-02-22 | trunk/cod/ Updating cod-tools to rev. 6008 under repository-hooks/. |
2011511.cif 2011511.hkl |
| 206588 | 2018-02-22 | trunk/cod/ Bugfix: HTML-escaping values loaded from the database in validate_select.php. |
2011511.cif 2011511.hkl |
| 206587 | 2018-02-22 | trunk/cod/tests/ Adding one more test case for validate_select.php. |
2011511.cif 2011511.hkl |
| 206586 | 2018-02-22 | trunk/cod/tests/ Restoring test case validate_select.php_002. |
2011511.cif 2011511.hkl |
| 206585 | 2018-02-22 | trunk/cod/tests/ Bugfix: reverse-merging r206584 into 'php-tests/check_user.php_004.user.sql'. The input was accidentally modified via a symlink. |
2011511.cif 2011511.hkl |
| 206584 | 2018-02-22 | trunk/cod/ Bugfix: loading user's real name as a default for corresponding author's name in validate_select.php. |
2011511.cif 2011511.hkl |
| 206583 | 2018-02-22 | trunk/cod/tests/ Adding a test case for validate_select.php. |
2011511.cif 2011511.hkl |
| 206582 | 2018-02-22 | trunk/cod/tests/ Converting php-tests/validate_select.php_001.session to JSON. |
2011511.cif 2011511.hkl |
| 206581 | 2018-02-22 | trunk/cod/ Using OpenBabel's Perl bindings to generate fingerprints from SMILES strings in Mysql_fp.pm. |
2011511.cif 2011511.hkl |
| 206580 | 2018-02-22 | trunk/cod/tests/ Adding a test case with a SMILES string that converts to a fingerprint without a single bit set. |
2011511.cif 2011511.hkl |
| 206579 | 2018-02-22 | trunk/cod/ Using Mysql_fp::smiles2fingerprint() in bin/select-smiles-codid instead of duplicated code. |
2011511.cif 2011511.hkl |
| 206578 | 2018-02-22 | trunk/cod/ Moving SMILES -> fingerprint conversion code from bin/fp-insert to Mysql_fp.pm. |
2011511.cif 2011511.hkl |
| 206551 | 2018-02-21 | trunk/cod/tests/ Updating test outputs for post-commit-dic2ikiwiki-update. |
2011511.cif 2011511.hkl |
| 206550 | 2018-02-21 | trunk/cod/ Starting the table of contents from the second-level headings in post-commit-dic2ikiwiki-update. |
2011511.cif 2011511.hkl |
| 206549 | 2018-02-21 | trunk/cod/ Updating cod-tools to rev. 6007 under repository-hooks/. |
2011511.cif 2011511.hkl |
| 206547 | 2018-02-21 | trunk/cod/ Removing superseded module Config_reader.pm. |
2011511.cif 2011511.hkl |
| 206546 | 2018-02-21 | trunk/cod/ Switching from Config_reader to ConfigLoader in bin/select-smiles-codid. |
2011511.cif 2011511.hkl |
| 206545 | 2018-02-21 | trunk/cod/tests/ Adding three test cases for bin/select-smiles-codid. |
2011511.cif 2011511.hkl |
| 206544 | 2018-02-21 | trunk/cod/ Switching from Config_reader to ConfigLoader in bin/fp-insert. |
2011511.cif 2011511.hkl |
| 206543 | 2018-02-21 | trunk/cod/tests/ Adding a test case for fp-insert script. |
2011511.cif 2011511.hkl |
| 206542 | 2018-02-21 | trunk/cod/ Switching from Config_reader to ConfigLoader in bin/smiles-insert. |
2011511.cif 2011511.hkl |
| 206539 | 2018-02-21 | trunk/cod/tests/ Adding a test case for smiles-insert script. |
2011511.cif 2011511.hkl |
| 206538 | 2018-02-21 | trunk/cod/ Adding 'DROP TABLE' statements as well as directions to disable foreign key checks for sql/db/smiles-create.sql and sql/db/fingerprints-create.sql. |
2011511.cif 2011511.hkl |
| 206537 | 2018-02-21 | trunk/cod/ Reformatting sql/db/smiles-create.sql via sqlt. |
2011511.cif 2011511.hkl |
| 206536 | 2018-02-21 | trunk/cod/ Reformatting sql/db/fingerprints-create.sql via sqlt. |
2011511.cif 2011511.hkl |
| 206535 | 2018-02-21 | trunk/cod/ Splitting sql/db/fp-table-create.sql into two per-table files. |
2011511.cif 2011511.hkl |
| 206519 | 2018-02-20 | trunk/cod/ Updating cod-tools to rev. 5986 under repository-hooks/. |
2011511.cif 2011511.hkl |
| 206496 | 2018-02-19 | trunk/cod/dependencies/ Listing missing dependencies for Debian 8. |
2011511.cif 2011511.hkl |
| 206453 | 2018-02-15 | trunk/cod/ Adding 'fonts-liberation' to the list of dependencies as this font is used by PHP CAPTCHA in tpl/check_user.php. |
2011511.cif 2011511.hkl |
| 206446 | 2018-02-15 | trunk/cod/ Introducing missing indentation in tpl/check_user.php. |
2011511.cif 2011511.hkl |
| 206445 | 2018-02-15 | trunk/cod/ Implementing a PHP module-based fallback for sites that do not use Google reCAPTCHA. |
2011511.cif 2011511.hkl |
| 206253 | 2018-02-06 | trunk/cod/ Removing unneccessary links from the bottom of new.html. |
2011511.cif 2011511.hkl |
| 206252 | 2018-02-06 | trunk/cod/ Updating the description of the validation and deposition interface in tpl/initiate_deposition.php. |
2011511.cif 2011511.hkl |
| 206248 | 2018-02-06 | trunk/cod/ Bugfix: preventing attaching Fobs or other related files to not yet uploaded CIF (or other structure) files in upload.php. |
2011511.cif 2011511.hkl |
| 206247 | 2018-02-06 | trunk/cod/tests/ Adding a test case for upload.php to showcase unwanted behavior of the script. |
2011511.cif 2011511.hkl |
| 206246 | 2018-02-06 | trunk/cod/ Simplifying PHP code of initiate_deposition.php. |
2011511.cif 2011511.hkl |
| 206245 | 2018-02-06 | trunk/cod/ Removing unused functionality to process user-entered e-mail address from initiate_deposition.php. |
2011511.cif 2011511.hkl |
| 206244 | 2018-02-06 | trunk/cod/tests/ Adding a test case for initiate_deposition.php with unspecified deposition type. |
2011511.cif 2011511.hkl |
| 206243 | 2018-02-06 | trunk/cod/tests/ Pretty-printing the HTML of test cases for initiate_deposition.php. |
2011511.cif 2011511.hkl |
| 206242 | 2018-02-06 | trunk/cod/tests/ Preparing the PHP session in php-tests/setup.setup. |
2011511.cif 2011511.hkl |
| 206240 | 2018-02-06 | trunk/ Bugfix: fixing and simplifying the routine to backup the depositor details in check_user.php. Previously used code seems to have ceased to work due to the changes in MySQL interface. |
2011511.cif 2011511.hkl |
| 206239 | 2018-02-06 | trunk/cod/tests/ Transforming session settings for test cases edit-txt-cif.php_001 to JSON format. |
2011511.cif 2011511.hkl |
| 206238 | 2018-02-06 | trunk/cod/tests/ Eradicating superseded session variable 'row_count' from the tests. |
2011511.cif 2011511.hkl |
| 206237 | 2018-02-06 | trunk/cod/tests/ Moving common input CIF file of test cases validate.php_00[12] to inputs/. |
2011511.cif 2011511.hkl |
| 206236 | 2018-02-06 | trunk/cod/tests/ Setting 'userid' in the session variable of validate.php_003 test case. |
2011511.cif 2011511.hkl |
| 206235 | 2018-02-06 | trunk/cod/tests/ Fixing test case validate.php_002. |
2011511.cif 2011511.hkl |
| 206234 | 2018-02-06 | trunk/cod/tests/ Fixing test case validate.php_001. |
2011511.cif 2011511.hkl |
| 206233 | 2018-02-06 | trunk/cod/tests/ Converting sessions of other validate.php test cases to JSON format. |
2011511.cif 2011511.hkl |
| 206232 | 2018-02-06 | trunk/cod/tests/ Fixing test case validate.php_004. Somewhy the rest of validate.php keep on throwing 'Security Alert! The PHP CGI cannot be accessed directly.'. |
2011511.cif 2011511.hkl |
| 206194 | 2018-02-05 | trunk/cod/tests/ Updating a couple more PHP test cases. |
2011511.cif 2011511.hkl |
| 206193 | 2018-02-05 | trunk/cod/tests/ Updating test cases having their own *.user.sql statement lists. |
2011511.cif 2011511.hkl |
| 206192 | 2018-02-05 | trunk/cod/tests/ Fixing test cases remind_email.php_00[56]. |
2011511.cif 2011511.hkl |
| 206190 | 2018-02-05 | trunk/cod/tests/ Fixing tests cases remind_email.php_00[78]. |
2011511.cif 2011511.hkl |
| 206189 | 2018-02-05 | trunk/cod/ Removing doubled space from a message in process_cif_file() from cif-functions.php. |
2011511.cif 2011511.hkl |
| 206188 | 2018-02-05 | trunk/cod/tests/ Updating test outputs for initiate_deposition.php after having its interface changed. |
2011511.cif 2011511.hkl |
| 206181 | 2018-02-05 | trunk/cod/ Adding tables of contents to the dic2ikiwiki-generated CIF dictionary pages. Updating cod-tools to rev. 5974 under repository-hooks/. |
2011511.cif 2011511.hkl |
| 206088 | 2018-02-02 | trunk/cod/tests/ Adding a test case for post-commit-dic2ikiwiki-update using a setting for SOURCE_DIR to skip the added dictionaries. |
2011511.cif 2011511.hkl |
| 206087 | 2018-02-02 | trunk/cod/tests/ Adding a test case for post-commit-dic2ikiwiki-update using a correct setting for SOURCE_DIR. |
2011511.cif 2011511.hkl |
| 206081 | 2018-02-02 | trunk/cod/ Updating cod-tools to rev. 5971 under repository-hooks/. |
2011511.cif 2011511.hkl |
| 206040 | 2018-02-01 | trunk/cod/ Adding a link to the COD Wiki to explain what an entry with errors means. |
2011511.cif 2011511.hkl |
| 206036 | 2018-02-01 | trunk/cod/ Adding bibliography of Merkys2017. |
2011511.cif 2011511.hkl |
| 206031 | 2018-02-01 | trunk/cod/tests/ Updating test output for remind_email.php_001. |
2011511.cif 2011511.hkl |
| 206030 | 2018-02-01 | trunk/cod/tests/ Accepting minor changes in the outputs of tests for remind_email.php. |
2011511.cif 2011511.hkl |
| 206029 | 2018-02-01 | trunk/cod/tests/ Accepting minor changes in the outputs of PHP tests. |
2011511.cif 2011511.hkl |
| 206028 | 2018-02-01 | trunk/cod/tests/ Bugfix: charset specification was added twice in some of the cases. |
2011511.cif 2011511.hkl |
| 206027 | 2018-02-01 | trunk/cod/tests/ Bugfix: charset specification was added twice in some of the cases. |
2011511.cif 2011511.hkl |
| 206026 | 2018-02-01 | trunk/cod/tests/ Appending charset specification to 'Content-type' fields in PHP outputs. |
2011511.cif 2011511.hkl |
| 206025 | 2018-02-01 | trunk/cod/tests/ Removing 'post-check=0, pre-check=0' from the outputs of PHP test cases. It seems that PHP ceased to add these parameters in the headers. |
2011511.cif 2011511.hkl |
| 206024 | 2018-02-01 | trunk/cod/tests/ Updating test outputs of edit-txt-cif.php as diffs contain only PHP-version-dependent stuff. |
2011511.cif 2011511.hkl |
| 206023 | 2018-02-01 | trunk/cod/tests/ Updating outputs of cases information_card.php_00[23] to include 'X-Powered-By' header. |
2011511.cif 2011511.hkl |
| 205954 | 2018-01-31 | trunk/cod/tests/ Adding php.ini for tests in order to bring back otherwise empty SID setting for PHP tests. |
2011511.cif 2011511.hkl |
| 205953 | 2018-01-31 | trunk/cod/tests/ Undoing revision 205952. |
2011511.cif 2011511.hkl |
| 205952 | 2018-01-31 | trunk/cod/tests/ Removing '-X-Powered-By' lines from outputs as new 'php-cgi' does not use them. |
2011511.cif 2011511.hkl |
| 205951 | 2018-01-31 | trunk/cod/tests/ Using proper session IDs in all ENV files in php-tests/. |
2011511.cif 2011511.hkl |
| 205950 | 2018-01-31 | trunk/cod/tests/ Converting check_user.php_*.session files to JSON format. Using proper session IDs in check_user.php_*.env, adjusting check_user.php.setup to extract CODSESSION from query strings with other items. |
2011511.cif 2011511.hkl |
| 205949 | 2018-01-31 | trunk/cod/tests/ Simplifying PHP session setting and getting. Remaking tests for upload.php. |
2011511.cif 2011511.hkl |
| 205850 | 2018-01-29 | trunk/cod/dependencies/ Adding seemingly new dependency. |
2011511.cif 2011511.hkl |
| 205849 | 2018-01-29 | trunk/cod/tests/ Switching to .mysql.client.conf-based MySQL database access in php-tests/remind_email.php_009.dump. |
2011511.cif 2011511.hkl |
| 205848 | 2018-01-29 | trunk/cod/tests/ Bugfix: fixing incorrect SQL file paths in php-tests/setup.setup. |
2011511.cif 2011511.hkl |
| 205847 | 2018-01-29 | trunk/cod/tests/ Updating CSS classes in PHP test output HTML. |
2011511.cif 2011511.hkl |
| 205846 | 2018-01-29 | trunk/cod/tests/ Updating links in PHP test output HTML. |
2011511.cif 2011511.hkl |
| 205845 | 2018-01-29 | trunk/cod/tests/ Updating links in PHP test output HTML. |
2011511.cif 2011511.hkl |
| 205844 | 2018-01-29 | trunk/cod/tests/ Updating CSS classes in PHP test output HTML. |
2011511.cif 2011511.hkl |
| 205843 | 2018-01-29 | trunk/cod/tests/ Updating links in PHP test output HTML. |
2011511.cif 2011511.hkl |
| 205841 | 2018-01-29 | trunk/cod/tests/ Switching to .mysql.client.conf-based MySQL database access in php-tests/check_user.php_005.dump. |
2011511.cif 2011511.hkl |
| 205840 | 2018-01-29 | trunk/cod/tests/ Modifying test dumpers for PHP scripts to use PHP version-independent PHP command line tools. |
2011511.cif 2011511.hkl |
| 205755 | 2018-01-26 | trunk/cod/ (antanas@echidna) Refactoring: updating to cod-tools revision 5966. |
2011511.cif 2011511.hkl |
| 205754 | 2018-01-26 | trunk/cod/ Fixing validation errors in css/style.css: adding units for quantities that require them. |
2011511.cif 2011511.hkl |
| 205710 | 2018-01-26 | trunk/ (antanas@echidna) Correcting a typo in the journal name ("Chemmistry"->"Chemistry"). |
2011511.cif 2011511.hkl |
| 205702 | 2018-01-26 | trunk/ (antanas@echidna) Correcting a typo in the personal communication journal name ("communications" -> "communication"). |
2011511.cif 2011511.hkl |
| 205640 | 2018-01-25 | trunk/cod/ Bugfix: fixing a link to user's prepublication page. |
2011511.cif 2011511.hkl |
| 205639 | 2018-01-25 | trunk/cod/ Updating field captions in tpl/validate_select.php. |
2011511.cif 2011511.hkl |
| 205638 | 2018-01-25 | trunk/cod/ Detecting and forbidding negative values of months to extend the hold period. |
2011511.cif 2011511.hkl |
| 205442 | 2018-01-21 | trunk/ (antanas@kurmis) Updating cod-tools to rev. 5963 under repository-hooks/. |
2011511.cif 2011511.hkl |
| 205410 | 2018-01-19 | trunk/cod/ Removing the code to set 'alt' classes to alternating rows in information tables. |
2011511.cif 2011511.hkl |
| 205409 | 2018-01-19 | trunk/cod/ Inverting colors of table rows. |
2011511.cif 2011511.hkl |
| 205408 | 2018-01-19 | trunk/cod/ Using CSS construction 'nth-child' instead of alternative class to color alterating table rows. |
2011511.cif 2011511.hkl |
| 205407 | 2018-01-19 | trunk/cod/ Bringing back the original style for search results table. |
2011511.cif 2011511.hkl |
| 205406 | 2018-01-19 | trunk/cod/ Bugfix: skipping to decode already decoded Unicode codepoints (originating from strings from CIF 2.0) in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 205405 | 2018-01-19 | trunk/cod/ Updating cod-tools to rev. 5962 under lib/. |
2011511.cif 2011511.hkl |
| 205404 | 2018-01-19 | trunk/cod/ Using a default value for unset configuration variable 'guid_prefix' in news-rss.pl. |
2011511.cif 2011511.hkl |
| 205403 | 2018-01-19 | trunk/cod/ Bugfix: skipping undefined configuration variables in news-rss.pl. |
2011511.cif 2011511.hkl |
| 205380 | 2018-01-18 | trunk/cod/ Fixing CSS for large database logos. Removing explicit size settings for logo displayed in new.html. |
2011511.cif 2011511.hkl |
| 205379 | 2018-01-18 | trunk/cod/ Removing id of HTML <img> element that is not referenced anywhere. |
2011511.cif 2011511.hkl |
| 205378 | 2018-01-18 | trunk/cod/ Removing explicit size setting for the database logo in index.php. |
2011511.cif 2011511.hkl |
| 205377 | 2018-01-18 | trunk/cod/ Using $db_ABBRV to set the alternative text for database ID in the front page of the site. |
2011511.cif 2011511.hkl |
| 205375 | 2018-01-18 | trunk/cod/tests/ Updating the tests for post-commit-dic2ikiwiki-update after switching to a newer version of dic2markdown. |
2011511.cif 2011511.hkl |
| 205374 | 2018-01-18 | trunk/cod/tests/ Switching to .mysql.client.conf-based MySQL database access in php-tests/remind_email.php.dump. |
2011511.cif 2011511.hkl |
| 205373 | 2018-01-18 | trunk/cod/tests/ Switching from sql/cod{,-users}/ to sql/db{,-users}/ directory names. |
2011511.cif 2011511.hkl |
| 205372 | 2018-01-18 | trunk/cod/tests/ Switching to .mysql.client.conf-based MySQL database access in setup scripts. |
2011511.cif 2011511.hkl |
| 205371 | 2018-01-18 | trunk/cod/tests/ Renaming variable 'MAIN_DIR' to 'TOP' in setup scripts of CGI tests. |
2011511.cif 2011511.hkl |
| 205365 | 2018-01-18 | trunk/cod/tests/ Adding a test case for cif-deposit.pl with strange symbols in supplied journal name. |
2011511.cif 2011511.hkl |
| 205362 | 2018-01-18 | trunk/cod/tests/ Adding a test case for cif-deposit.pl to test the acception of Unicode symbols in the values of 'journal' parameter. |
2011511.cif 2011511.hkl |
| 205361 | 2018-01-18 | trunk/cod/ Updating cod-tools to rev. 5949 under lib/. Adjusting cif-deposit.pl to the changed output formatting of some messages. |
2011511.cif 2011511.hkl |
| 205358 | 2018-01-18 | trunk/cod/ Allowing Unicode symbols in journal names. |
2011511.cif 2011511.hkl |
| 205261 | 2018-01-16 | trunk/cod/ Quelching 'svn add' error message upon attempt to add already existing file. |
2011511.cif 2011511.hkl |
| 205260 | 2018-01-16 | trunk/cod/ Updating cod-tools to rev. 5939 under repository-hooks/. |
2011511.cif 2011511.hkl |
| 205125 | 2018-01-12 | trunk/cod/ Setting target for the link to COD Wiki in tpl/validate.php to '_blank'. |
2011511.cif 2011511.hkl |
| 205124 | 2018-01-12 | trunk/cod/ Styling hyperlinks in div.duplicate in white to be more visible. |
2011511.cif 2011511.hkl |
| 205123 | 2018-01-12 | trunk/cod/ Implementing possibility to set Subversion repository password in the configuration file of 'post-commit-dic2ikiwiki-update'. |
2011511.cif 2011511.hkl |
| 205122 | 2018-01-12 | trunk/cod/ Adding a link to Wiki page on duplicate entries to the messages reporting about possible duplicates. |
2011511.cif 2011511.hkl |
| 205121 | 2018-01-12 | trunk/cod/tests/ Adding a test case with multiple CIF DDLm dictionaries. |
2011511.cif 2011511.hkl |
| 205120 | 2018-01-12 | trunk/cod/ Bugfix: not executing dictionary creation if there are no dictionaries in a repository by 'post-commit-dic2ikiwiki-update'. |
2011511.cif 2011511.hkl |
| 205119 | 2018-01-12 | trunk/cod/tests/ Adding a test case for 'post-commit-dic2ikiwiki-update' repository hook. |
2011511.cif 2011511.hkl |
| 205118 | 2018-01-12 | trunk/cod/repository-hooks/ Adding an example configuration file for repository hook 'post-commit-dic2ikiwiki-update'. |
2011511.cif 2011511.hkl |
| 205117 | 2018-01-12 | trunk/cod/ Adding a repository hook to update Markdown version of DDLm dictionary in *OD ikiwiki page. |
2011511.cif 2011511.hkl |
| 205116 | 2018-01-12 | trunk/cod/ Updating cod-tools to rev. 5930 under repository-hooks/. |
2011511.cif 2011511.hkl |
| 205115 | 2018-01-12 | trunk/cod/tests/ Adjusting a pair of test outputs to the changed output format of a newer Subversion client. |
2011511.cif 2011511.hkl |
| 205114 | 2018-01-12 | trunk/cod/tests/ Using 'xmllint' to validate and pretty-print the HTML, generated by cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 205081 | 2018-01-11 | trunk/cod/ Updating hard-coded API version of OPTiMaDe in the .htaccess. |
2011511.cif 2011511.hkl |
| 205080 | 2018-01-11 | trunk/cod/ Implementing very primitive result pagination for optimade.pl. |
2011511.cif 2011511.hkl |
| 205079 | 2018-01-11 | trunk/cod/ Updating API and implementation versions. |
2011511.cif 2011511.hkl |
| 205078 | 2018-01-11 | trunk/cod/ Renaming CGI parameter 'limit' to 'response_limit' in optimade.pl as per specs v0.9.5. |
2011511.cif 2011511.hkl |
| 205077 | 2018-01-11 | trunk/cod/ Adding 'nelements' to the output of optimade.pl. |
2011511.cif 2011511.hkl |
| 205076 | 2018-01-11 | trunk/cod/ Reworking base URL info endpoint response for optimade.pl. |
2011511.cif 2011511.hkl |
| 205075 | 2018-01-11 | trunk/cod/ Introducing 'attributes' in the response of 'structure' queries of optimade.pl. |
2011511.cif 2011511.hkl |
| 205074 | 2018-01-11 | trunk/cod/ Removing duplicated instruction from optimade.pl. |
2011511.cif 2011511.hkl |
| 205073 | 2018-01-11 | trunk/cod/ Further adjustments to optimade.pl according to v0.9.5 specs. |
2011511.cif 2011511.hkl |
| 205072 | 2018-01-11 | trunk/cod/ Adjusting the output JSON of optimade.pl to match OPTiMaDe specs of v0.9.5. |
2011511.cif 2011511.hkl |
| 205071 | 2018-01-11 | trunk/cod/tests/ Adjusting changed paths of SQL files in cif-deposit.pl.setup. Updating a couple of test outputs for cif-deposit.pl due to the changed wordings of messages in cod-tools. |
2011511.cif 2011511.hkl |
| 205070 | 2018-01-11 | trunk/cod/tests/ Sorting object keys in the output of optimade.pl. |
2011511.cif 2011511.hkl |
| 204994 | 2018-01-09 | trunk/cod/tests/ Updating a pair of test cases for information_card.php. |
2011511.cif 2011511.hkl |
| 204993 | 2018-01-09 | trunk/cod/tests/ Bugfix: executable for PHP CGI was not set correctly by Makeconf. |
2011511.cif 2011511.hkl |
| 204990 | 2018-01-09 | trunk/ (antanas@echidna) Bug fix: giving tables unique ids. |
2011511.cif 2011511.hkl |
| 204989 | 2018-01-09 | trunk/ (antanas@echidna) Bug fix: replacing the restful link in the 'information_card.php' since it redirects the depositor to the stripped predeposition file instead of the full one. |
2011511.cif 2011511.hkl |
| 204983 | 2018-01-09 | trunk/cod/ Using standard CGI.pm routines in cif-template.pl. |
2011511.cif 2011511.hkl |
| 204982 | 2018-01-09 | trunk/cod/ Replacing tabs with spaces in cgi-bin/cif-template.pl. |
2011511.cif 2011511.hkl |
| 204981 | 2018-01-09 | trunk/cod/tests/ Adding a test case for cif-template.pl. |
2011511.cif 2011511.hkl |
| 204980 | 2018-01-09 | trunk/cod/tests/ Enabling CGI tests without STDIN. |
2011511.cif 2011511.hkl |
| 204929 | 2018-01-08 | trunk/cod/sql/ (antanas@echidna) Enhancement: adding the sql creation file of the 'news' table. |
2011511.cif 2011511.hkl |
| 204925 | 2018-01-08 | trunk/cod/ (antanas@echidna) Refactoring: correcting a typo "dublicate" -> "duplicate". |
2011511.cif 2011511.hkl |
| 204917 | 2018-01-08 | trunk/cod/ Adding year 2018. |
2011511.cif 2011511.hkl |
| 204912 | 2018-01-08 | trunk/cod/ (antanas@kurmis) Refactoring: replacing the tab symbol with 4 spaces in the 'post-commit-update' hook. |
2011511.cif 2011511.hkl |
| 204621 | 2017-12-30 | trunk/ (antanas@kurmis) Bugfix: updating the 'my_depositions.php' to avoid generating empty tables. |
2011511.cif 2011511.hkl |
| 204591 | 2017-12-29 | trunk/ (antanas@echidna) Bug fix: correcting a few XHTML incompatibility errors. |
2011511.cif 2011511.hkl |
| 204589 | 2017-12-29 | trunk/ (antanas@echidna) Enhancement: adding the id attribute on the Advisory Board header. |
2011511.cif 2011511.hkl |
| 204588 | 2017-12-29 | trunk/ (antanas@echidna) Bug fix: adding the missing opening "<fieldset>" tag. |
2011511.cif 2011511.hkl |
| 204587 | 2017-12-29 | trunk/ (antanas@echidna) Bug fix: correcting a few XHTML incompatibility errors. |
2011511.cif 2011511.hkl |
| 204586 | 2017-12-29 | trunk/ (antanas@echidna) Bug fix: correcting a few XHTML incompatibility errors. |
2011511.cif 2011511.hkl |
| 204583 | 2017-12-29 | trunk/cod/ (antanas@echidna) Enhancement: adding the usage example of the REPORT_{ERROR,WARNING,NOTICE,SUCCESS} variables to the 'post-commit-update.config.example' file. |
2011511.cif 2011511.hkl |
| 204575 | 2017-12-29 | trunk/cod/ (antanas@echidna) Refactoring: renaming the sql directories to avoid using the COD acronym. |
2011511.cif 2011511.hkl |
| 204452 | 2017-12-21 | trunk/ (antanas@echidna) Bug fix: correcting several html errors. |
2011511.cif 2011511.hkl |
| 204394 | 2017-12-20 | trunk/cod/ (antanas@echidna) Refactoring: renaming a variable to avoid using the name of a specific DB. |
2011511.cif 2011511.hkl |
| 204393 | 2017-12-20 | trunk/cod/ (antanas@echidna) Updating the description of the 'post-commit-sql-update' hook. |
2011511.cif 2011511.hkl |
| 204392 | 2017-12-20 | trunk/cod/ (antanas@echidna) Enhancement: generalising the post and pre commit svn hooks dealing with SQL tables. |
2011511.cif 2011511.hkl |
| 204341 | 2017-12-19 | trunk/cod/ (antanas@echidna) Enhancement: updating a typo in the 'post-commit-update.config.example'. |
2011511.cif 2011511.hkl |
| 204287 | 2017-12-15 | trunk/ (antanas@echidna) Enhancement: correcting several typos in comments and error messages. |
2011511.cif 2011511.hkl |
| 204286 | 2017-12-15 | trunk/cod/ Skipping processing of non-matched elements in map() blocks in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203831 | 2017-11-30 | trunk/cod/ Downloading SOLSA logo in order to include its local path in index.php. |
2011511.cif 2011511.hkl |
| 203830 | 2017-11-30 | trunk/cod/ Downloading AMCSD logo in order to include it's local path in index.php. |
2011511.cif 2011511.hkl |
| 203725 | 2017-11-28 | trunk/cod/tests/ Adding a test case which demonstrates that post-commit-sql-update does not insert new rows into data table. |
2011511.cif 2011511.hkl |
| 203724 | 2017-11-28 | trunk/cod/ Fixing a typo in error message printed by post-commit-sql-update. |
2011511.cif 2011511.hkl |
| 203723 | 2017-11-28 | trunk/cod/tests/ Inserting empty value for 'cod.data' field 'text' as it has no default. |
2011511.cif 2011511.hkl |
| 203722 | 2017-11-28 | trunk/cod/ Fixing a bug in cif-deposit.pl introduced during the simplification of SVN rollback code. |
2011511.cif 2011511.hkl |
| 203721 | 2017-11-28 | trunk/cod/ Terminating the deposition upon empty SVN commit in cif-deposit.pl. Even extension of hold periods that previously did not modify CIF files do that now. |
2011511.cif 2011511.hkl |
| 203720 | 2017-11-28 | trunk/cod/ Simplifying some of the code concerning cleanup after failed depositions in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203719 | 2017-11-28 | trunk/cod/ Eliminating one more source of non-determinism in cif-deposit.pl by sorting hash keys. |
2011511.cif 2011511.hkl |
| 203718 | 2017-11-28 | trunk/cod/ Simplifying placeholder generation in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203717 | 2017-11-28 | trunk/cod/ Adding 'db_code_data_item' to example configuration of cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203716 | 2017-11-28 | trunk/cod/ Making the database code CIF data item configurable. |
2011511.cif 2011511.hkl |
| 203715 | 2017-11-28 | trunk/cod/tests/ Inserting DEFAULT values for TIMESTAMP fields instead of 0, as value 0 is no longer allowed by MySQL server. |
2011511.cif 2011511.hkl |
| 203713 | 2017-11-28 | trunk/cod/ Bugfix: ceasing to modify author names in _publ_author_name data items in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203712 | 2017-11-28 | trunk/cod/tests/ Remaking outputs of a bunch of test cases. |
2011511.cif 2011511.hkl |
| 203711 | 2017-11-28 | trunk/cod/ Bugfix: author names were not taken correctly from CIF files in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203639 | 2017-11-27 | trunk/cod/ Fixing two bugs concerning message printing via finish_html_and_die() of cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203638 | 2017-11-27 | trunk/cod/ Bugfix: database name was not capitalised in finish_html_and_die() of cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203637 | 2017-11-27 | trunk/cod/tests/ Updating a bunch of tests for cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203636 | 2017-11-27 | trunk/cod/tests/ Adding value of 'shard_pattern' to the test configurations for cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203635 | 2017-11-27 | trunk/cod/ Bugfix: prefix tree was not constructed properly for HKL files in cif-deposit.pl. Removing possible non-determinism by sorting hash keys. |
2011511.cif 2011511.hkl |
| 203634 | 2017-11-27 | trunk/cod/ Narrowing the scope for @hkl_splitted_filenames variable in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203632 | 2017-11-27 | trunk/cod/ Simplifying a couple of constructions in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203631 | 2017-11-27 | trunk/cod/ Moving the code to ensure that all CIF datablocks belong to the same journal to a separate subroutine in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203630 | 2017-11-27 | trunk/cod/ Moving the test for same values of deposition authors across all CIF datablocks to a separate subroutine. |
2011511.cif 2011511.hkl |
| 203629 | 2017-11-27 | trunk/cod/ Fixing an error message informing about incorrect database ID in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203628 | 2017-11-27 | trunk/cod/ Renaming COD_number_microformatter() to DB_ID_microformatter() in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203627 | 2017-11-27 | trunk/cod/ Adding 'shard_pattern' to the configuration file example. |
2011511.cif 2011511.hkl |
| 203626 | 2017-11-27 | trunk/cod/ Making shard pattern configurable for cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203625 | 2017-11-27 | trunk/cod/ Collecting shard pattern from different places of cif-deposit.pl in order to ensure SPOT. |
2011511.cif 2011511.hkl |
| 203624 | 2017-11-27 | trunk/cod/ Simplifying constructions for ID prefix extraction in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203623 | 2017-11-27 | trunk/cod/ Taking database abbreviation from uppercased MySQL database name in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203622 | 2017-11-27 | trunk/cod/ Changing names of CSS classes to database-neutral in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203621 | 2017-11-27 | trunk/cod/ Setting the database abbreviation in single place in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 203551 | 2017-11-24 | trunk/cod/ Printing log in form following an unsuccessful session log in attempt. |
2011511.cif 2011511.hkl |
| 203550 | 2017-11-24 | trunk/cod/ Bugfix: errors were collected but not displayed in session-login.php. |
2011511.cif 2011511.hkl |
| 203549 | 2017-11-24 | trunk/cod/ Not printing anything in the main flow during unsuccessful session log in attempt. |
2011511.cif 2011511.hkl |
| 203548 | 2017-11-24 | trunk/cod/ Bugfix in session-login.php: errors were not visible to the user. |
2011511.cif 2011511.hkl |
| 203268 | 2017-11-17 | trunk/cod/ (antanas@echidna) Bug fix: changing "Advices" to "Advice" in tpl/head.html. |
2011511.cif 2011511.hkl |
| 203216 | 2017-11-15 | trunk/cod/ (antanas@echidna) Enhancement: adding a script that converts Wikidata entity code to a Wikipedia link. |
2011511.cif 2011511.hkl |
| 203003 | 2017-11-09 | trunk/cod/ Relying on "official" data item name as taken from '_definition.id' for generation of looped data item names. |
2011511.cif 2011511.hkl |
| 203002 | 2017-11-09 | trunk/cod/ Relying on "official" data item name, as taken from '_definition.id', rather than trying to derive it from save block name. |
2011511.cif 2011511.hkl |
| 203001 | 2017-11-09 | trunk/cod/ Using better method to tell a CIF data item from category definition. |
2011511.cif 2011511.hkl |
| 201957 | 2017-10-13 | cif/2/ Marking COD entries in range 2/01 that are known to be related to ChemSpider entries using the _cod_related_entry data loop. |
2011511.cif 2011511.hkl |
| 201859 | 2017-10-09 | trunk/cod/tests/ Adding a second test case for cif-template.pl. |
2011511.cif 2011511.hkl |
| 201858 | 2017-10-09 | trunk/cod/tests/ Initiating an attempt to simplify the testing system. |
2011511.cif 2011511.hkl |
| 201812 | 2017-10-06 | trunk/cod/ Ceasing to show sharded links to CIF and HKL files in information_card.php. |
2011511.cif 2011511.hkl |
| 201810 | 2017-10-06 | trunk/cod/ Bugfix: incorrect order of table forming XML tags. |
2011511.cif 2011511.hkl |
| 201768 | 2017-10-05 | trunk/cod/tests/ Adapting CGI tests to MySQL version 5.7.19 (on Ubuntu-16.04) in the tests for repository hooks. Adding 'at' to the list of package dependencies. |
2011511.cif 2011511.hkl |
| 201767 | 2017-10-05 | trunk/cod/tests/ Selecting existing PHP CGI program between php-cgi and php5-cgi. |
2011511.cif 2011511.hkl |
| 201766 | 2017-10-05 | trunk/cod/tests/ Adding dependencies for Ubuntu-16.04 OS. |
2011511.cif 2011511.hkl |
| 201764 | 2017-10-05 | trunk/cod/tests/ Adapting CGI tests to MySQL version 5.7.19 (on Ubuntu-16.04). |
2011511.cif 2011511.hkl |
| 201224 | 2017-09-25 | Updating the SOLSA links. | 2011511.cif 2011511.hkl |
| 201223 | 2017-09-25 | Updating the acknowledgements. | 2011511.cif 2011511.hkl |
| 199928 | 2017-08-24 | trunk/cod/ Changing the case of 'Chemical formula' in search.html. |
2011511.cif 2011511.hkl |
| 199927 | 2017-08-24 | trunk/cod/ Forbidding line breaks in 'in Hill notation' string in search.html. |
2011511.cif 2011511.hkl |
| 199926 | 2017-08-24 | trunk/cod/ Adding a search form field for querying by chemical formula. |
2011511.cif 2011511.hkl |
| 199901 | 2017-08-23 | trunk/cod/ Making JSME search default in the sidebar links, as JME is no longer supported by some Web browsers. |
2011511.cif 2011511.hkl |
| 199818 | 2017-08-17 | trunk/cod/ Bugfix: data_global data block of HKL file was lost during splitting, resulting in disrupted order of the data blocks. Eventually, empty HKL files were deposited to the COD. |
2011511.cif 2011511.hkl |
| 199816 | 2017-08-17 | trunk/cod/ Updating cod-tools under lib/ to rev. 5502. Remaking an output of a test case. |
2011511.cif 2011511.hkl |
| 199815 | 2017-08-17 | trunk/cod/ Bugfix: fixing incorrect regular expression in cif-deposit.pl that was used to remove line terminating symbols from HKL file. Previously used regular expression introduced extra newlines, what is detrimental to the data in CIF text fields. |
2011511.cif 2011511.hkl |
| 199814 | 2017-08-17 | trunk/cod/tests/ Adding a failing test case, demonstrating how newlines in data item values cause the output of cifvalues to be misparsed. |
2011511.cif 2011511.hkl |
| 198891 | 2017-07-21 | trunk/cod/ Replacing deprecated <nobr>...</nobr> HTML tags with CSS-based solution in search.html. |
2011511.cif 2011511.hkl |
| 198890 | 2017-07-21 | trunk/cod/ Replacing static size of allcod.smi database with a dynamic one, which is taken from allcod.smi upon each display of a page in {jcp,jsme}_search.html. |
2011511.cif 2011511.hkl |
| 198758 | 2017-07-17 | trunk/cod/tests/ Adding a test case to test the deposition of CIF files with unknown tags. |
2011511.cif 2011511.hkl |
| 198754 | 2017-07-17 | trunk/cod/ Fixing regular expression for cif_filter for filtering Fobs. |
2011511.cif 2011511.hkl |
| 198753 | 2017-07-17 | trunk/cod/ Bugfix: correcting regular expressions for cif_filter messages (required a literal dollar sign instead of end of string). |
2011511.cif 2011511.hkl |
| 198594 | 2017-07-10 | trunk/cod/ Introducing configuration parameter '$cif_deposit_url' allowing to specify other than default setting for cif-deposit.pl's URL. Removing obsoleted method that was used as a fallback for servers that did not have '/cod/' or other infixes in their URLs. |
2011511.cif 2011511.hkl |
| 198473 | 2017-07-05 | trunk/cod/cgi-bin/ Implementing a check for same CIF data item selected for more than one column in CIF loop. |
2011511.cif 2011511.hkl |
| 198466 | 2017-07-05 | trunk/cod/cgi-bin/ Removing one level of indentation in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198465 | 2017-07-05 | trunk/cod/cgi-bin/ Solving Unicode-related problems in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198460 | 2017-07-05 | trunk/cod/cgi-bin/ Adding 'Download as CIF' button to cif-template.pl. |
2011511.cif 2011511.hkl |
| 198459 | 2017-07-05 | trunk/cod/cgi-bin/ Implementing CIF download in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198458 | 2017-07-05 | trunk/cod/cgi-bin/ Adding _audit_conform.* data items to the output of cif-template.pl. |
2011511.cif 2011511.hkl |
| 198457 | 2017-07-05 | trunk/cod/cgi-bin/ Removing trailing space from Subversion ID in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198456 | 2017-07-05 | trunk/cod/cgi-bin/ Adding '_audit.creation_date' and '_audit.creation_method' to the output CIF generated by cif-template.pl. Setting svn:keywords. |
2011511.cif 2011511.hkl |
| 198382 | 2017-07-04 | trunk/cod/ Adding notices upon selecting CIF values 'other' in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198381 | 2017-07-04 | trunk/cod/ Making CIF tag/category names bold in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198380 | 2017-07-04 | trunk/cod/cgi-bin/ Adding a tip for filling CIF loops in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198379 | 2017-07-04 | trunk/cod/cgi-bin/ Adding headers to pages, generated by cif-template.pl. |
2011511.cif 2011511.hkl |
| 198378 | 2017-07-04 | trunk/cod/cgi-bin/ Improving the landing page of cif-template.pl. |
2011511.cif 2011511.hkl |
| 198377 | 2017-07-04 | trunk/cod/cgi-bin/ Implementing dictionary choice window in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198373 | 2017-07-04 | trunk/cod/cgi-bin/ Implementing additional checks for DDL conformance of processed CIF dictionaries in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198372 | 2017-07-04 | trunk/cod/cgi-bin/ Removing terminal period from the error messages in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198371 | 2017-07-04 | trunk/cod/cgi-bin/ Improving error handling in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198370 | 2017-07-04 | trunk/cod/cgi-bin/ Implementing a bunch of tests in cif-template.pl to prevent the server from the overuse of its resources. |
2011511.cif 2011511.hkl |
| 198340 | 2017-07-03 | trunk/cod/cgi-bin/ Adding tooltips for categories in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198339 | 2017-07-03 | trunk/cod/ Improving CSS for cif-template.pl. |
2011511.cif 2011511.hkl |
| 198338 | 2017-07-03 | trunk/cod/ Adding CSS for cif-template.pl. Improving error messages. |
2011511.cif 2011511.hkl |
| 198337 | 2017-07-03 | trunk/cod/cgi-bin/ Implementing more complex check for incorrect number of columns in a CIF loop in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198336 | 2017-07-03 | trunk/cod/cgi-bin/ Displaying an error message for incorrectly entered textfields in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198335 | 2017-07-03 | trunk/cod/cgi-bin/ Implementing a very primitive validation for incorrectly entered data for loops in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198334 | 2017-07-03 | trunk/cod/cgi-bin/ Adding CIF2 magic code to the output of cif-template.pl. Setting page title. |
2011511.cif 2011511.hkl |
| 198333 | 2017-07-03 | trunk/cod/cgi-bin/ Implementing the accomodation of CIF loops in the output of cif-template.pl. |
2011511.cif 2011511.hkl |
| 198332 | 2017-07-03 | trunk/cod/cgi-bin/ Displaying a proper title in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198331 | 2017-07-03 | trunk/cod/cgi-bin/ Cleaning up the code and the output of cif-template.pl. |
2011511.cif 2011511.hkl |
| 198330 | 2017-07-03 | trunk/cod/cgi-bin/ Setting CSS classes for HTML divs in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198329 | 2017-07-03 | trunk/cod/cgi-bin/ Ceasing to display loop data items along non-loop data items in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198328 | 2017-07-03 | trunk/cod/cgi-bin/ Adding a very simple form to enter CIF loops. |
2011511.cif 2011511.hkl |
| 198325 | 2017-07-02 | trunk/ (antanas@kurmis) Refactoring: updating several error messages. |
2011511.cif 2011511.hkl |
| 198324 | 2017-07-02 | trunk/ (antanas@kurmis) Refactoring: renaming the deposition type from 'Pre-publication' to 'Prepublication'. |
2011511.cif 2011511.hkl |
| 198323 | 2017-07-02 | trunk/ (antanas@kurmis) Enhancement: assigning several error messages the CSS error class. |
2011511.cif 2011511.hkl |
| 198322 | 2017-07-02 | trunk/ (antanas@kurmis) Refactoring: correcting multiple minor mistakes in jcp_search.html, jme_search.html and jsme_search.html in order to conform to the requirements of the XHTML 1.0 Strict slightly more. |
2011511.cif 2011511.hkl |
| 198321 | 2017-07-02 | trunk/ (antanas@kurmis) Refactoring: correcting multiple minor mistakes in tpl/save.php and upload.php in order to conform to the requirements of the XHTML 1.0 Strict. |
2011511.cif 2011511.hkl |
| 198316 | 2017-07-01 | trunk/ (antanas@kurmis) Refactoring: correcting multiple minor mistakes in tpl/validate_select.php and session-login.php in order to conform to the requirements of the XHTML 1.0 Strict. |
2011511.cif 2011511.hkl |
| 198315 | 2017-07-01 | trunk/cod/tpl/ (antanas@kurmis) Refactoring: correcting multiple minor mistakes in tpl/manage_depositions.php in order to conform to the requirements of the XHTML 1.0 Strict. |
2011511.cif 2011511.hkl |
| 198314 | 2017-07-01 | trunk/cod/ (antanas@kurmis) Refactoring: correcting multiple minor mistakes in information_card.php in order to conform to the requirements of the XHTML 1.0 Strict. |
2011511.cif 2011511.hkl |
| 198313 | 2017-07-01 | trunk/cod/tpl/ (antanas@kurmis) Refactoring: correcting multiple minor mistakes in tpl/edit.php in order to conform to the requirements of the XHTML 1.0 Strict. |
2011511.cif 2011511.hkl |
| 198312 | 2017-07-01 | trunk/cod/ (antanas@kurmis) Refactoring: correcting multiple minor mistakes in tpl/validate.php in order to conform to the requirements of the XHTML 1.0 Strict. |
2011511.cif 2011511.hkl |
| 198311 | 2017-07-01 | trunk/cod/ (antanas@kurmis) Refactoring: correcting multiple minor mistakes in tpl/results.php in order to conform to the requirements of the XHTML 1.0 Strict. |
2011511.cif 2011511.hkl |
| 198254 | 2017-06-29 | trunk/cod/cgi-bin/ Displaying all the loops at the end of page, generated by cif-template.pl. |
2011511.cif 2011511.hkl |
| 198253 | 2017-06-29 | trunk/cod/cgi-bin/ Separating data items from loops in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198252 | 2017-06-29 | trunk/cod/cgi-bin/ Bugfix: bringing back the broken 'Add' functionality. |
2011511.cif 2011511.hkl |
| 198251 | 2017-06-29 | trunk/cod/cgi-bin/ Detecting 'loop data items' in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198250 | 2017-06-29 | trunk/cod/cgi-bin/ Changing the layout of the form elements in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198249 | 2017-06-29 | trunk/cod/cgi-bin/ Implementing usage of enumerator defaults in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198248 | 2017-06-29 | trunk/cod/cgi-bin/ Adding two special values to drop-down selection lists, '?' and '.'. |
2011511.cif 2011511.hkl |
| 198247 | 2017-06-29 | trunk/cod/cgi-bin/ Displaying drop-down selection lists for enumerator data items in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198246 | 2017-06-29 | trunk/cod/cgi-bin/ Adding tag descriptions as tooltips. |
2011511.cif 2011511.hkl |
| 198244 | 2017-06-29 | trunk/ (antanas@echidna.ibt.lt) Enhancement: adding checks for transliterated names. |
2011511.cif 2011511.hkl |
| 198243 | 2017-06-29 | trunk/cod/ Adding a script to check the syntactic correctness of COD SMILES files. |
2011511.cif 2011511.hkl |
| 198240 | 2017-06-29 | trunk/cod/ Bugfix: class 'good' has been renamed to 'valid' in the CSS, but not in tpl/edit-txt-cif.php -- correcting. |
2011511.cif 2011511.hkl |
| 198239 | 2017-06-29 | trunk/cod/ Bugfix: incorrect regular expression was used to detect CIF2 in edit-txt-cif.php. |
2011511.cif 2011511.hkl |
| 198237 | 2017-06-29 | trunk/cod/ Bugfix: preserving CIF v2.0 magic code for CIF v2.0 files during the addition of the bibliography in edit-txt-cif.php. |
2011511.cif 2011511.hkl |
| 198138 | 2017-06-26 | trunk/cod/ Implementing search by formula in result.php. |
2011511.cif 2011511.hkl |
| 198089 | 2017-06-22 | trunk/cod/ Preserving previously entered values after clicking 'Add' buttons in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198088 | 2017-06-22 | trunk/ (antanas@kurmis) Bugfix: correcting some misplaced divs. |
2011511.cif 2011511.hkl |
| 198087 | 2017-06-22 | trunk/cod/ (antanas@kurmis) Refactoring: correcting some html mistakes in tpl/check_user.php. |
2011511.cif 2011511.hkl |
| 198086 | 2017-06-22 | trunk/ (antanas@kurmis) Refactoring: removing the extra '</p>' from 'my_depositions.php'. |
2011511.cif 2011511.hkl |
| 198085 | 2017-06-22 | trunk/cod/ Using $cgi->Vars hash instead of param() in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198084 | 2017-06-22 | trunk/ (antanas@kurmis) Refactoring: escaping ampersand symbols in 'my_depositions.php' in order to form valid URLs. |
2011511.cif 2011511.hkl |
| 198083 | 2017-06-22 | trunk/cod/ Skipping empty values, correcting generated CIF data block in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198082 | 2017-06-22 | trunk/ (antanas@kurmis) Refactoring: updated the the login screen to direct to the same page when an incorrect username is input as when an incorrect password is entered. |
2011511.cif 2011511.hkl |
| 198081 | 2017-06-22 | trunk/cod/ Bugfix: putting forgotten curly braces in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198080 | 2017-06-22 | trunk/cod/ Adding a submit button to cif-template.pl. |
2011511.cif 2011511.hkl |
| 198079 | 2017-06-22 | trunk/cod/ Fixing a bug with conditionals in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198078 | 2017-06-22 | trunk/cod/ Bugfix: incorrect variable was used in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198077 | 2017-06-22 | trunk/cod/ Producing CIF file from GET/POST data in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198075 | 2017-06-22 | trunk/cod/ Creating buttons for each tag in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198073 | 2017-06-22 | trunk/cod/ Preparing an HTML page in cif-template.pl. |
2011511.cif 2011511.hkl |
| 198072 | 2017-06-22 | trunk/cod/ (antanas@kurmis) Refactoring: changing the layout of the data upload websites. |
2011511.cif 2011511.hkl |
| 198071 | 2017-06-22 | trunk/cod/ Using a temporary file to store the dictionary. |
2011511.cif 2011511.hkl |
| 198070 | 2017-06-22 | trunk/cod/ Adding an outline of CGI script that prepares an HTML form for entry of values. |
2011511.cif 2011511.hkl |
| 198044 | 2017-06-21 | trunk/cod/ (antanas@kurmis) Refactoring: replacing the <font> tag with a CSS style in order to conform to the requirements of the XHTML 1.0 Strict. |
2011511.cif 2011511.hkl |
| 198043 | 2017-06-21 | trunk/cod/ (antanas@kurmis) Refactoring: adding a wrapping div inside the form in order to conform to the requirements of the XHTML 1.0 Strict. |
2011511.cif 2011511.hkl |
| 198037 | 2017-06-21 | trunk/cod/ Setting tabindex for login form in tpl/initiate_deposition.php. |
2011511.cif 2011511.hkl |
| 198036 | 2017-06-21 | trunk/cod/ (antanas@kurmis) Refactoring: correctin 'datablock' to 'data block'. |
2011511.cif 2011511.hkl |
| 198002 | 2017-06-20 | trunk/ (antanas@echidna.ibt.lt) Refactoring: updating the text in the registration form. |
2011511.cif 2011511.hkl |
| 198000 | 2017-06-20 | trunk/ (antanas@echidna.ibt.lt) Enhancement: updating a few messages to reference the username instead of the account name. |
2011511.cif 2011511.hkl |
| 197998 | 2017-06-20 | trunk/ (antanas@echidna.ibt.lt) Bugfix: updating the 'check_user' script so the user would be redirected to the same login form instead of the one with a single password field. |
2011511.cif 2011511.hkl |
| 197990 | 2017-06-20 | trunk/ (antanas@echidna.ibt.lt) Bugfix: adding a missing concatenation operator. |
2011511.cif 2011511.hkl |
| 197989 | 2017-06-20 | trunk/ (antanas@echidna.ibt.lt) Enhancement: updating the way e-mail addresses are checked. |
2011511.cif 2011511.hkl |
| 197985 | 2017-06-20 | trunk/ (antanas@echidna.ibt.lt) Bugfix: checking if mandatory fields are actually filled in the 'check_user.php' script. |
2011511.cif 2011511.hkl |
| 197984 | 2017-06-20 | trunk/ (antanas@echidna.ibt.lt) Refactoring: updating the message describing a strong password. |
2011511.cif 2011511.hkl |
| 197983 | 2017-06-20 | trunk/ (antanas@echidna.ibt.lt) Refactoring: simplifying the is_password_strong() function to return a boolean value in all cases. |
2011511.cif 2011511.hkl |
| 197969 | 2017-06-20 | trunk/cod/tests/ Updating paths, that have been changed on the file system. |
2011511.cif 2011511.hkl |
| 197968 | 2017-06-20 | trunk/ (antanas@echidna.ibt.lt) Enhancement: updating the error messages. |
2011511.cif 2011511.hkl |
| 197938 | 2017-06-19 | trunk/cod/ Rewording form labels in tpl/check_user.php. |
2011511.cif 2011511.hkl |
| 197933 | 2017-06-19 | trunk/cod/ Bugfix: using UTF8 encoding for MySQL traffic in manage_depositions.php. |
2011511.cif 2011511.hkl |
| 197932 | 2017-06-19 | trunk/cod/ Realigning line breaks in tpl/remind_email.php. |
2011511.cif 2011511.hkl |
| 197931 | 2017-06-19 | trunk/cod/ Putting additional line breaks in tpl/remind_email.php. |
2011511.cif 2011511.hkl |
| 197930 | 2017-06-19 | trunk/cod/ Fixing line breaks in tpl/remind_email.php. |
2011511.cif 2011511.hkl |
| 197928 | 2017-06-19 | trunk/cod/ Merging branch 'andrius-split-login' into trunk/cod/. Merge command: svn merge ^/branches/andrius-split-login --reintegrate |
2011511.cif 2011511.hkl |
| 197846 | 2017-06-15 | trunk/cod/ Bugfix: div closing tag was in place of div opening tag in session-login.php. |
2011511.cif 2011511.hkl |
| 197815 | 2017-06-14 | trunk/cod/tests/ Setting content length to 0 in php-tests/check_user.php_005.env. |
2011511.cif 2011511.hkl |
| 197814 | 2017-06-14 | trunk/cod/tests/ Removing broken link php-tests/setup.user.sql. |
2011511.cif 2011511.hkl |
| 197813 | 2017-06-14 | trunk/cod/tests/ Updating a pair of test cases for check_user.php. |
2011511.cif 2011511.hkl |
| 197812 | 2017-06-14 | trunk/cod/tests/ Updating tests for check_user.php and remind_email.php. |
2011511.cif 2011511.hkl |
| 197811 | 2017-06-14 | trunk/cod/tests/ Bugfix: cleaning MySQL tables before the execution of each PHP test. Updating test outputs of a pair of tests. |
2011511.cif 2011511.hkl |
| 197810 | 2017-06-14 | trunk/cod/tests/ Updating test outputs of some PHP tests. |
2011511.cif 2011511.hkl |
| 197809 | 2017-06-14 | trunk/cod/ Adding Makefile instructions to create a temporary directory for tests. |
2011511.cif 2011511.hkl |
| 197698 | 2017-06-09 | trunk/cod/ Correcting an error message in check_user.php. |
2011511.cif 2011511.hkl |
| 197697 | 2017-06-09 | trunk/cod/ Bugfix: correctly converting JSON to PHP associative array. Adding 'php5-curl' to the list of dependencies. |
2011511.cif 2011511.hkl |
| 197696 | 2017-06-09 | trunk/cod/ (antanas@echidna.ibt.lt) Refactoring: removing the "pt" modifier since it is not supposed to be used with the image height values. |
2011511.cif 2011511.hkl |
| 197695 | 2017-06-09 | trunk/ (antanas@echidna.ibt.lt) Refactoring: specifying the cod-box picture centering with css instead of the align property. |
2011511.cif 2011511.hkl |
| 197694 | 2017-06-09 | trunk/cod/ (antanas@echidna.ibt.lt) Refactoring: centering the COD box image in new.html. |
2011511.cif 2011511.hkl |
| 197693 | 2017-06-09 | trunk/cod/ Removing empty space from reCAPTCHA textarea. |
2011511.cif 2011511.hkl |
| 197692 | 2017-06-09 | trunk/ (antanas@echidna.ibt.lt) Refactoring: correcting some syntax errors in the new.html to make the website XHTML 1.0 Strict compliant. |
2011511.cif 2011511.hkl |
| 197691 | 2017-06-09 | trunk/cod/ Adding custom function to handle reCAPTCHA v2 to lib/recaptcha-php-2/recaptchalib.php. |
2011511.cif 2011511.hkl |
| 197690 | 2017-06-09 | trunk/cod/ Bugfix: including missing directory separator tpl/check_user.php. |
2011511.cif 2011511.hkl |
| 197689 | 2017-06-09 | trunk/cod/ Starting to adapt user registration to reCAPTCHA v2. |
2011511.cif 2011511.hkl |
| 197688 | 2017-06-09 | trunk/cod/ (antanas@echidna.ibt.lt) Refactoring: changing the id of the COD logo image from 'logo' to 'cod_logo' in head.html. |
2011511.cif 2011511.hkl |
| 197687 | 2017-06-09 | trunk/cod/ (antanas@echidna.ibt.lt) Refactoring: correcting some syntax errors in the check_user.php to make the website more XHTML 1.0 Strict compliant. |
2011511.cif 2011511.hkl |
| 197686 | 2017-06-09 | trunk/cod/tpl/ (antanas@echidna.ibt.lt) Refactoring: adding alt text property to the 'codsmall' image in head.html. |
2011511.cif 2011511.hkl |
| 197648 | 2017-06-08 | trunk/ (antanas@echidna.ibt.lt) Refactoring: correcting some syntax errors to make multiple websites more XHTML 1.0 Strict compliant. |
2011511.cif 2011511.hkl |
| 197647 | 2017-06-08 | trunk/cod/ (antanas@echidna.ibt.lt) Refactoring: correcting some syntax errors to make the search.html website more XHTML 1.0 Strict compliant. |
2011511.cif 2011511.hkl |
| 197613 | 2017-06-07 | trunk/cod/ Moving the preparation of external links above the visual part in information_card.php. |
2011511.cif 2011511.hkl |
| 197572 | 2017-06-06 | trunk/cod/ Changing button captions in tpl/validate.php as suggested by Antanas. |
2011511.cif 2011511.hkl |
| 197522 | 2017-06-05 | trunk/cod/ Replacing hard-coded 'cod' and 'COD' with appropriate PHP variables. |
2011511.cif 2011511.hkl |
| 197520 | 2017-06-05 | trunk/cod/ Allowing '@' symbols in database passwords in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 197518 | 2017-06-05 | trunk/cod/ Setting svn:ignore to skip generated files under Materials-Consortia-API/. |
2011511.cif 2011511.hkl |
| 197048 | 2017-05-30 | trunk/cod/ Launching validate.sh by its relative path. |
2011511.cif 2011511.hkl |
| 197047 | 2017-05-30 | trunk/cod/ Fixing squashed div in validation page. |
2011511.cif 2011511.hkl |
| 197045 | 2017-05-30 | trunk/cod/ CSS fix: replacing clearing divs with <br/> HTML items. |
2011511.cif 2011511.hkl |
| 197038 | 2017-05-30 | trunk/cod/maintenance-scripts/ Deleting temporary editable files under tmp/uploads/. |
2011511.cif 2011511.hkl |
| 196690 | 2017-05-17 | trunk/cod/ Listing forgotten dependency on libwww-curl-perl for Ubuntu-12.04. |
2011511.cif 2011511.hkl |
| 196689 | 2017-05-17 | trunk/cod/ Noting a recentrly introduced dependency on liburi-perl (for babel_search.pl). |
2011511.cif 2011511.hkl |
| 196688 | 2017-05-17 | trunk/cod/ Bugfix: URL-encoding SMILES passed via HTTP GET/POST in order to prevent the interpretation of '+' sign as space. |
2011511.cif 2011511.hkl |
| 196583 | 2017-05-09 | trunk/cod/ Adjusting the CSS to reserve space for the left sidebar as a margin. This adjustment replaces 'display: grid' setting, which is not supported by some of Web browsers. |
2011511.cif 2011511.hkl |
| 195880 | 2017-05-01 | trunk/cod/lib/jsme/ Adding license.txt and release_notes.txt from the original distribution. |
2011511.cif 2011511.hkl |
| 195879 | 2017-05-01 | trunk/cod/lib/ Adding source of jsme v2017-02-26, as downloaded from http://peter-ertl.com/jsme/download/JSME_2017-02-26.zip. |
2011511.cif 2011511.hkl |
| 195878 | 2017-05-01 | trunk/cod/lib/ Deleting 'jsme' prior to replacing with the more recent version. |
2011511.cif 2011511.hkl |
| 195722 | 2017-04-24 | trunk/cod/ Allowing the customisation of news.rss GUID prefix. |
2011511.cif 2011511.hkl |
| 195721 | 2017-04-24 | trunk/cod/ Allowing the customisation of news.rss title via the configuration file. |
2011511.cif 2011511.hkl |
| 195716 | 2017-04-24 | trunk/cod/ Removing explicit line breaks from new.html, setting 'margin-top' CSS property to provide spacings instead. |
2011511.cif 2011511.hkl |
| 195713 | 2017-04-24 | trunk/cod/ Grouping <a> links in browse.html and information_card.php with divs. |
2011511.cif 2011511.hkl |
| 195711 | 2017-04-24 | trunk/cod/ Fixing a bug in separation of file type and extension: for ROD, file type is CIF, whereas it's extension is ROD. |
2011511.cif 2011511.hkl |
| 195705 | 2017-04-24 | trunk/cod/ Setting width of <hr> in the footer to 100%. |
2011511.cif 2011511.hkl |
| 195704 | 2017-04-24 | trunk/cod/ Changing style of <div id="page"> from 'table' to 'grid'. |
2011511.cif 2011511.hkl |
| 195554 | 2017-04-19 | trunk/cod/ Changing the title of information_card.php to 'Information card for entry XXXXXXX'. |
2011511.cif 2011511.hkl |
| 195553 | 2017-04-19 | trunk/cod/ Increasing the size of the title a bit. |
2011511.cif 2011511.hkl |
| 195551 | 2017-04-19 | trunk/cod/ Making the title size and left margin of main body relative to the default font size (16pt, according to https://www.w3schools.com/css/css_font.asp). |
2011511.cif 2011511.hkl |
| 195547 | 2017-04-19 | trunk/cod/ Centering the contents of the index page using CSS instead of HTML <center> tag. |
2011511.cif 2011511.hkl |
| 195546 | 2017-04-19 | trunk/cod/ Making the link of COD icon (bubbles in the box) absolute. |
2011511.cif 2011511.hkl |
| 195510 | 2017-04-18 | trunk/cod/lib/Materials-Consortia-API/tests/ (saulius@koala.ibt.lt) Ignoring *.diff test files in tests/outputs/. |
2011511.cif 2011511.hkl |
| 195509 | 2017-04-18 | trunk/cod/ Adding a Makefile to build all sources under lib/. |
2011511.cif 2011511.hkl |
| 195504 | 2017-04-18 | trunk/cod/ Bugfix: input processor 'process_rod.php' does not exist, thus 'process_cif.php' should be used instead. |
2011511.cif 2011511.hkl |
| 195503 | 2017-04-18 | trunk/cod/ Bugfix: upload form element name in tpl/validate_select.php must match file's type ('cif' or 'rod'). |
2011511.cif 2011511.hkl |
| 195502 | 2017-04-18 | trunk/cod/ Introducing $struct_file_extension parameter in edit.php and save.php. |
2011511.cif 2011511.hkl |
| 195501 | 2017-04-18 | trunk/cod/ Introducing $struct_file_extension parameter in validate_select.php and its template. |
2011511.cif 2011511.hkl |
| 195500 | 2017-04-18 | trunk/cod/ Introducing $struct_file_extension parameter in upload.php and process_*.php. |
2011511.cif 2011511.hkl |
| 195499 | 2017-04-18 | trunk/cod/ Tidying HTML, generated by tpl/head.php. Remaking test outputs. |
2011511.cif 2011511.hkl |
| 195498 | 2017-04-18 | trunk/cod/tests/ Updating test outputs for information_card.php. Adding additional test case. |
2011511.cif 2011511.hkl |
| 195497 | 2017-04-18 | trunk/cod/ Adding missing imports of footers in information_card.php. |
2011511.cif 2011511.hkl |
| 195496 | 2017-04-18 | trunk/cod/tests/ Adding one more test case for information_card.php. |
2011511.cif 2011511.hkl |
| 195495 | 2017-04-18 | trunk/cod/tests/ Remaking test outputs for initiate_deposition.php. |
2011511.cif 2011511.hkl |
| 195494 | 2017-04-18 | trunk/cod/tests/ Remaking test outputs for edit-txt-cif.php. |
2011511.cif 2011511.hkl |
| 195493 | 2017-04-18 | trunk/cod/ Introducing $struct_file_extension parameter in view.php and tpl/edit-txt-cif.php. |
2011511.cif 2011511.hkl |
| 195492 | 2017-04-18 | trunk/cod/ Introducing $struct_file_extension parameter in result.php and it's templates. |
2011511.cif 2011511.hkl |
| 195491 | 2017-04-18 | trunk/cod/ Introducing a parameter allowing to customise the extension of coordinates file. |
2011511.cif 2011511.hkl |
| 195490 | 2017-04-18 | trunk/cod/tests/ Adding repository URLs to php-tests/setup.config. |
2011511.cif 2011511.hkl |
| 195489 | 2017-04-18 | trunk/cod/tests/ Adding a test case for information_card.php. |
2011511.cif 2011511.hkl |
| 195488 | 2017-04-18 | trunk/cod/tests/ Adding symlink 'cgi-inputs'. |
2011511.cif 2011511.hkl |
| 195487 | 2017-04-18 | trunk/cod/tests/ Renaming 'cgi-inputs' to 'inputs'. |
2011511.cif 2011511.hkl |
| 195486 | 2017-04-18 | trunk/cod/ Tiny fixes of information_card.php code. |
2011511.cif 2011511.hkl |
| 195485 | 2017-04-18 | trunk/cod/ Removing unused variable $cifPath. |
2011511.cif 2011511.hkl |
| 195447 | 2017-04-14 | trunk/cod/ Fixing the rest of CSS to avoid fixing page width. |
2011511.cif 2011511.hkl |
| 195446 | 2017-04-14 | trunk/cod/ Removing page width constraints. |
2011511.cif 2011511.hkl |
| 195443 | 2017-04-14 | trunk/cod/ Merging a pair of style definitions in css/style.css. |
2011511.cif 2011511.hkl |
| 195379 | 2017-04-12 | trunk/cod/ Bugfix: fixing a link to RSS feed in sidebar. |
2011511.cif 2011511.hkl |
| 195372 | 2017-04-12 | trunk/cod/ Style regularisations in search.html. |
2011511.cif 2011511.hkl |
| 195367 | 2017-04-12 | trunk/cod/ Bringing back missing '/cod/' infixes in links in tpl/head.html. |
2011511.cif 2011511.hkl |
| 195366 | 2017-04-12 | trunk/cod/ Fixing <li> formatting in search.html. Removing local styles. |
2011511.cif 2011511.hkl |
| 195365 | 2017-04-12 | trunk/cod/ Putting bug report e-mail and related sentence inside a <p> tag. |
2011511.cif 2011511.hkl |
| 195361 | 2017-04-12 | trunk/cod/ Centering the logo in the top left corner of the page. Simplifying the CSS. |
2011511.cif 2011511.hkl |
| 195356 | 2017-04-12 | trunk/cod/ Defining the same class for sidebar logo as the container of sidebar links below. Removing ID 'sidebar'. |
2011511.cif 2011511.hkl |
| 195351 | 2017-04-12 | trunk/cod/ Merging branch 'andrius-css-improvements' into trunk/cod/. Merge command: svn merge ^/branches/andrius-css-improvements --reintegrate |
2011511.cif 2011511.hkl |
| 195306 | 2017-04-10 | trunk/cod/ Moving direct formatting from information_card.php to css/style.css. |
2011511.cif 2011511.hkl |
| 195295 | 2017-04-10 | trunk/cod/ Removing duplicated quote in information_card.php. |
2011511.cif 2011511.hkl |
| 194920 | 2017-04-05 | trunk/cod/ Moving the HTML generation after the most of the control variables are set in information_card.php. |
2011511.cif 2011511.hkl |
| 194901 | 2017-04-04 | trunk/cod/ Putting one more error message to $tpl['errors'] in information_card.php. |
2011511.cif 2011511.hkl |
| 194896 | 2017-04-04 | trunk/cod/ Moving directory 'jsme' under lib/. |
2011511.cif 2011511.hkl |
| 194895 | 2017-04-04 | trunk/cod/ Moving directory 'jmol' under lib/. |
2011511.cif 2011511.hkl |
| 194894 | 2017-04-04 | trunk/cod/ Moving directory 'jsmol' under lib/. |
2011511.cif 2011511.hkl |
| 194890 | 2017-04-04 | trunk/cod/ Adding year 2017 to browse.html. |
2011511.cif 2011511.hkl |
| 194874 | 2017-04-04 | trunk/cod/ Fixing a typo in a message, generated by tpl/check_user.php. |
2011511.cif 2011511.hkl |
| 194765 | 2017-04-04 | trunk/cod/ Removing unused script 'check_cookies.php'. |
2011511.cif 2011511.hkl |
| 194657 | 2017-04-03 | trunk/cod/ Adding a test case for the deposition of CIF file with unrecognised tag. |
2011511.cif 2011511.hkl |
| 194655 | 2017-04-03 | trunk/cod/ Bugfix: unrecognised tags were not ignored by cif-deposit.pl due to the changed wording of messages. |
2011511.cif 2011511.hkl |
| 194653 | 2017-04-03 | trunk/cod/ Prepending version strings in optimade.pl with 'v' as shown in the most examples in the specifications (albeit not declared mandatory anywhere). |
2011511.cif 2011511.hkl |
| 194652 | 2017-04-03 | trunk/cod/ Implementing _cod_cellformula filter keyword in optimade.pl. |
2011511.cif 2011511.hkl |
| 194650 | 2017-04-03 | trunk/cod/ Parsing queried formulae in optimade.pl in order to comply with the following requirements from the specification: * The order in which elements are specified should not be significant * No spaces or separators are allowed |
2011511.cif 2011511.hkl |
| 194561 | 2017-03-28 | trunk/cod/ Using database-description_v1.0.xml in post-commit-sql-update instead of superseded CODDictionary.xml. NOTE: there must be a link to cod/xml/ directory inside base directory of COD repository hooks from now. Updating cod-tools to rev. 5139. |
2011511.cif 2011511.hkl |
| 194560 | 2017-03-28 | trunk/cod/ Using database-description_v1.0.xml in optimade.pl instead of superseded CODDictionary.xml. |
2011511.cif 2011511.hkl |
| 194559 | 2017-03-28 | trunk/cod/ Increasing the readability of cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 194545 | 2017-03-27 | trunk/cod/ Removing no longer actual dump of COD 'methods' table under sql/. |
2011511.cif 2011511.hkl |
| 194544 | 2017-03-27 | trunk/cod/ Removing CODDictionary.xml, superseded by COD database XML description: URL: svn://www.crystallography.net/cod/trunk/cod/xml/documents/database-description/database-description_v1.0.xml Repository Root: svn://www.crystallography.net/cod Repository UUID: 63ed0e03-d63f-44cc-9660-0a71951c6e73 Revision: 194543 |
2011511.cif 2011511.hkl |
| 194543 | 2017-03-27 | trunk/cod/ Adding version 1.0 of COD database description in XML. |
2011511.cif 2011511.hkl |
| 194427 | 2017-03-22 | trunk/cod/tests/ Remaking outputs of a couple of PHP tests. |
2011511.cif 2011511.hkl |
| 194425 | 2017-03-22 | trunk/cod/ Updating the .htaccess to allow single-entry queries for OPTiMaDe. |
2011511.cif 2011511.hkl |
| 194423 | 2017-03-22 | trunk/cod/ Bugfix: single question mark ('?') was written as the value of 'representation' field when the representation string was undefined in optimade.pl. |
2011511.cif 2011511.hkl |
| 194422 | 2017-03-22 | trunk/cod/ Implementing OPTiMaDe's single entry endpoint for querying individual structures. Bumping implementation version to 1.0.0-alpha.8. Adding tests. |
2011511.cif 2011511.hkl |
| 194421 | 2017-03-22 | trunk/cod/ Parsing filter string only if 'structures' or 'all' endpoint is specified. |
2011511.cif 2011511.hkl |
| 194420 | 2017-03-22 | trunk/cod/ Bugfix: converting value, returned by 'select count(*) ...', to integer in optimade.pl: string value was returned before and incorporated into response JSON as string, what is not allowed by schema. |
2011511.cif 2011511.hkl |
| 194419 | 2017-03-22 | trunk/cod/ Bugfix: OPTiMaDe's /structures endpoint was not resolved correctly. |
2011511.cif 2011511.hkl |
| 194227 | 2017-03-14 | trunk/cod/ Validating the output of cif2cod before inserting it into COD SQL database in order to prevent incorrect data from appearing on the database. |
2011511.cif 2011511.hkl |
| 194226 | 2017-03-14 | trunk/cod/ Updating cod-tools to rev. 5054. Adjusting cif-deposit.pl to the changed syntax of error messages. Updating test outputs. |
2011511.cif 2011511.hkl |
| 194198 | 2017-03-13 | trunk/cod/ Making CIF handling consume less memory in process_cif_file() of cif-functions.php. |
2011511.cif 2011511.hkl |
| 192831 | 2017-03-03 | trunk/cod/tests/ Modifying post-commit-sql-update_003.filter to filter out times and dates. |
2011511.cif 2011511.hkl |
| 192830 | 2017-03-03 | trunk/cod/ Turning command line option '--use-datablocks-without-coordinates' on for cif2cod call in 'post-commit-sql-update' repository hook so as to update SQL table for entries without fractional coordinate loops. Adding a test case with COD entry 2100852 (Cartesian coordinates only). |
2011511.cif 2011511.hkl |
| 192417 | 2017-02-21 | trunk/cod/ Updating cod-tools in lib/ and repository-hooks/ to rev. 4962. |
2011511.cif 2011511.hkl |
| 192416 | 2017-02-21 | trunk/cod/tests/ Adding a test case 'post-commit-sql-update_002' to test the deletion of entries from COD 'data' table. |
2011511.cif 2011511.hkl |
| 192415 | 2017-02-21 | trunk/cod/tests/ Simplifying test setup for 'bin' tests. Bringing back test case 'post-commit-sql-update_001'. |
2011511.cif 2011511.hkl |
| 192414 | 2017-02-21 | trunk/cod/tests/ Making outputs of test cases cif-deposit.pl_04[567] and cif-deposit.pl_03[678] deterministic. |
2011511.cif 2011511.hkl |
| 192413 | 2017-02-21 | trunk/cod/ Using C CIF parser everywhere in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 192411 | 2017-02-21 | trunk/cod/ Adding field 'cellformula' to the list of database fields, generated by 'post-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 192409 | 2017-02-21 | trunk/cod/ Updating cod-tools to rev. 4955 in lib/ and repository-hooks/. Canonicalizing tag names in cif-deposit.pl, since most COD Perl modules require canonicalized tags now. Remaking test outputs. |
2011511.cif 2011511.hkl |
| 192368 | 2017-02-20 | trunk/cod/tests/ Adding bin-tests/post-commit-update_004.filter to sort Subversion messages prior to diffing. |
2011511.cif 2011511.hkl |
| 192367 | 2017-02-20 | trunk/cod/tests/ Removing unneeded symlink 'sql'. |
2011511.cif 2011511.hkl |
| 192366 | 2017-02-20 | trunk/cod/tests/ Removing old test dependencies. Forbidding the creation of test directories by bin/run_test in --depend mode. |
2011511.cif 2011511.hkl |
| 192365 | 2017-02-20 | trunk/cod/tests/ Removing commented out text from cgi-tests/optimade.pl.setup. |
2011511.cif 2011511.hkl |
| 192364 | 2017-02-20 | trunk/cod/tests/ Building test dependencies via the testing script, bin/run_test. |
2011511.cif 2011511.hkl |
| 192362 | 2017-02-20 | trunk/cod/tests/ Tidying up cgi-tests/cif-deposit.pl.setup. |
2011511.cif 2011511.hkl |
| 192361 | 2017-02-20 | trunk/cod/tests/ Remaking test outputs for cases cif-deposit.pl_04[567]: incorrect representations of UTF-8 symbols were fixed. |
2011511.cif 2011511.hkl |
| 192360 | 2017-02-20 | trunk/cod/tests/ Taking COD MySQL private DB descriptions from trunk/sql/cod-users/ instead of having them all concatenated in setup.user.sql. |
2011511.cif 2011511.hkl |
| 192359 | 2017-02-20 | trunk/cod/tests/ Taking COD MySQL DB descriptions from trunk/cod/sql/data/ instead of having them all concatenated in setup.data.sql. |
2011511.cif 2011511.hkl |
| 192358 | 2017-02-20 | trunk/cod/tests/ Updating outputs for test cases cif-deposit.pl_036 and cif-deposit.pl_037. |
2011511.cif 2011511.hkl |
| 192357 | 2017-02-20 | trunk/cod/tests/ Updating the description of COD MySQL DB table 'data', which is used for testing. Adding descriptions of 'journals' and 'jaltnames' tables. Remaking test outputs. |
2011511.cif 2011511.hkl |
| 192356 | 2017-02-20 | trunk/cod/tests/ Attempting to restore test case 'post-commit-sql-update_001' by adapting it to the new location of tests. |
2011511.cif 2011511.hkl |
| 192355 | 2017-02-20 | trunk/cod/ Adding column 'cellformula' to COD MySQL DB table 'data' in order to keep non-reduced ('P 1'; Z = 1) formulae of structures. Updating test cases. |
2011511.cif 2011511.hkl |
| 191891 | 2017-02-07 | trunk/cod/tests/ Removing unused and broken symbolic links in bin/. |
2011511.cif 2011511.hkl |
| 191886 | 2017-02-07 | trunk/cod/ Fixing incorrect Content-Type declared by optimade.pl. |
2011511.cif 2011511.hkl |
| 191884 | 2017-02-07 | trunk/cod/ Allowing 'info' queries for OPTiMaDe interface in the .htaccess. |
2011511.cif 2011511.hkl |
| 191882 | 2017-02-07 | trunk/cod/tests/ Removing explicit UTF-8 binmode declaration from optimade.pl since it used to corrupt printed strings from parsed COD database schema definition. |
2011511.cif 2011511.hkl |
| 191881 | 2017-02-07 | trunk/cod/ Adding property descriptions for 'structures' entry type in optimade.pl. Bumping alpha version. |
2011511.cif 2011511.hkl |
| 191878 | 2017-02-07 | trunk/cod/ Taking descriptions of COD MySQL 'data' table from CODDictionary.xml for optimade.pl. |
2011511.cif 2011511.hkl |
| 191873 | 2017-02-07 | trunk/cod/ Implementing base URL and 'structures' entry type information endpoints in optimade.pl. Bumping alpha version. Adding a pair of tests. |
2011511.cif 2011511.hkl |
| 191870 | 2017-02-07 | trunk/cod/ Detecting unknown endpoints in optimade.pl. |
2011511.cif 2011511.hkl |
| 191864 | 2017-02-07 | trunk/cod/ Fixing a bug in optimade.pl: 'TZ' was inserted instead of null value for the field 'last_modified' if the last modification timestamp was unknown. Bumping the alpha version for optimade.pl. Remaking test outputs. |
2011511.cif 2011511.hkl |
| 191863 | 2017-02-07 | trunk/cod/tests/ Adding a pair of tests for optimade.pl with a larger database. |
2011511.cif 2011511.hkl |
| 191856 | 2017-02-07 | trunk/cod/tests/ Reviewing 'rsync' calls in test environment preparations. |
2011511.cif 2011511.hkl |
| 191799 | 2017-02-06 | trunk/cod/tests/ Removing revisions of optimade.pl from the printout of the script. |
2011511.cif 2011511.hkl |
| 191798 | 2017-02-06 | trunk/cod/tests/ Adding a pair of tests to demonstrate the error handling. |
2011511.cif 2011511.hkl |
| 191797 | 2017-02-06 | trunk/cod/ Using more explicit version of DSN string in database connection in order to support SQLite3-based tests. |
2011511.cif 2011511.hkl |
| 191796 | 2017-02-06 | trunk/cod/tests/ Adding second test case for optimade.pl. |
2011511.cif 2011511.hkl |
| 191795 | 2017-02-06 | trunk/cod/tests/ Removing a commented out line. |
2011511.cif 2011511.hkl |
| 191794 | 2017-02-06 | trunk/cod/tests/ Adding a first test case for optimade.pl. |
2011511.cif 2011511.hkl |
| 191793 | 2017-02-06 | trunk/cod/tests/ Updating excluded paths in cgi-tests/cif-deposit.pl.setup. |
2011511.cif 2011511.hkl |
| 191792 | 2017-02-06 | trunk/cod/tests/ Defining $db_ABBRV and $db_abbrv in php-tests/setup.config. Remaking a pair of test outputs. |
2011511.cif 2011511.hkl |
| 191787 | 2017-02-06 | trunk/cod/tests/ Adding post-commit-update_002.filter to unify the output of the tested script. |
2011511.cif 2011511.hkl |
| 191786 | 2017-02-06 | trunk/cod/tests/ Removing superseded symlink 'script_to_test'. |
2011511.cif 2011511.hkl |
| 191785 | 2017-02-06 | trunk/cod/tests/ Remaking output of test case 'edit-txt-cif.php_006'. |
2011511.cif 2011511.hkl |
| 191784 | 2017-02-06 | trunk/cod/tests/ Updating test cases having their own *.data.sql files. |
2011511.cif 2011511.hkl |
| 191783 | 2017-02-06 | trunk/cod/tests/ Adding description of SQL field 'compoundsource' to cgi-tests/setup.data.sql. Remaking test outputs. |
2011511.cif 2011511.hkl |
| 191782 | 2017-02-06 | trunk/cod/tests/ Excluding 'tests' in 'rsync' invocations. Updating paths, removing the reliace upon 'script_to_test' symlink. |
2011511.cif 2011511.hkl |
| 191781 | 2017-02-06 | trunk/cod/tests/ Updating symlinks after the move. |
2011511.cif 2011511.hkl |
| 191780 | 2017-02-06 | trunk/cod/ Adding a .htaccess to tests/ to hide the contents. |
2011511.cif 2011511.hkl |
| 191779 | 2017-02-06 | cod/ Moving branches/cgi-tests to trunk/cod/tests, since 'cgi-tests' is not technically a branch of trunk, but is a per-branch test suite for the code. |
2011511.cif 2011511.hkl |
| 191029 | 2017-01-27 | trunk/cod/sql/cod/ Updating CREATE TABLE command dump for 'data' table. Adding CREATE TABLE dumps for additional journal tables. |
2011511.cif 2011511.hkl |
| 190886 | 2017-01-24 | trunk/cod/ Updating external sources of cod-tools to rev. 4798. |
2011511.cif 2011511.hkl |
| 190885 | 2017-01-24 | trunk/cod/ Checking compound source during the duplicate search in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 190884 | 2017-01-24 | trunk/cod/ Updating external sources of cod-tools to rev. 4796. Preparing repository hooks to insert 'compoundsource' into 'data' tables in the database. |
2011511.cif 2011511.hkl |
| 189103 | 2016-12-13 | trunk/cod/ Implementing 'elements' search property for OPTIMADE interface. |
2011511.cif 2011511.hkl |
| 189102 | 2016-12-13 | trunk/cod/ Unifying stripping quotes from query string in cgi-bin/optimade.pl. |
2011511.cif 2011511.hkl |
| 189101 | 2016-12-13 | trunk/cod/ Implementing 'modification_date' search property for OPTIMADE interface. |
2011511.cif 2011511.hkl |
| 188855 | 2016-12-02 | trunk/cod/ Bugfix: incorrect error message was displayed upon unknown property in a filter. |
2011511.cif 2011511.hkl |
| 188852 | 2016-12-02 | trunk/cod/ Bugfix: ordering entries by IDs upon returning in cgi-bin/optimade.pl. |
2011511.cif 2011511.hkl |
| 188851 | 2016-12-02 | trunk/cod/ Merging in branch 'andrius-optimade'. Merge command: svn merge ^/branches/andrius-optimade |
2011511.cif 2011511.hkl |
| 188805 | 2016-12-01 | trunk/cod/ Undoing revisions 188772 and 188773: support for OPTIMADE should be developed separately from the existing search interface (result.php). |
2011511.cif 2011511.hkl |
| 188773 | 2016-11-30 | trunk/cod/ Implementing rewriting of OPTIMADE v1 queries in the form: http://.../cod/optimade(/v1)?/structures?... Currently, only original query keywords for result.php are effective, since rewrite instruction dumbly forwards whole query string to result.php. |
2011511.cif 2011511.hkl |
| 188772 | 2016-11-30 | trunk/cod/ Implementing JSON format of query results according to OPTIMADE API specification (as of today). |
2011511.cif 2011511.hkl |
| 188043 | 2016-11-08 | trunk/cod/ Comparing author names in canonicalized form ('van Surname, Name') if all other comparisons fail to match depositing author's name with any of the CIF authors. Updating cod-tools to rev. 4769 under lib/. |
2011511.cif 2011511.hkl |
| 187873 | 2016-11-05 | trunk/cod/ (saulius@koala.ibt.lt) Setting property 'svn:keywords' on 'CODDictionary.xml'. |
2011511.cif 2011511.hkl |
| 187872 | 2016-11-05 | trunk/cod/sql/ (saulius@koala.ibt.lt) Adding the 'CODDictionary.xml' file describing the COD 'data' table columns for publication on the COD Web site. Path: /home/saulius/src/cod-tools/doc/CODDictionary.xml Name: CODDictionary.xml URL: svn://www.crystallography.net/cod-tools/trunk/doc/CODDictionary.xml Repository Root: svn://www.crystallography.net/cod-tools Repository UUID: 04be6746-3802-0410-999d-98508da1e98c Revision: 4768 Node Kind: file Schedule: normal Last Changed Author: saulius Last Changed Rev: 4753 Last Changed Date: 2016-10-25 12:02:52 +0300 (Tue, 25 Oct 2016) Text Last Updated: 2016-11-01 15:00:41 +0200 (Tue, 01 Nov 2016) Checksum: 05b2b18aa1a756c7e479141aaefa2d9d |
2011511.cif 2011511.hkl |
| 187809 | 2016-11-04 | trunk/cod/ Switching from cif_split_primitive to cif_split for splitting of CIF and Fobs files in cif-deposit.pl, since primitive splitting used to cause problems with comments inside text fields and headers. Updating cod-tools to rev. 4768 in lib/. |
2011511.cif 2011511.hkl |
| 187785 | 2016-11-03 | trunk/cod/ Bugfix: correctly adding stylesheets to HTML head. |
2011511.cif 2011511.hkl |
| 187783 | 2016-11-03 | trunk/cod/ Bugfix: replacing '<? echo $value;?>' PHP construction in tpl/remind_email.php with '<?=$value?>', since '<? ' seems to be no longer recognised by PHP. |
2011511.cif 2011511.hkl |
| 187266 | 2016-10-11 | trunk/cod/ Using more standard way to add links to CSS files. |
2011511.cif 2011511.hkl |
| 187263 | 2016-10-11 | trunk/cod/ Using a more standard way to link stylesheets in static HTML files. |
2011511.cif 2011511.hkl |
| 186932 | 2016-10-05 | trunk/cod/ Updating cod-tools to rev. 4715 in lib/. |
2011511.cif 2011511.hkl |
| 186740 | 2016-09-23 | trunk/cod/ Taking database name from db_ABBRV configuration variable in codsql2rdf.pl. |
2011511.cif 2011511.hkl |
| 186723 | 2016-09-22 | trunk/cod/ Enhancing error detection and reporting in codcif2rdf.pl. |
2011511.cif 2011511.hkl |
| 186722 | 2016-09-22 | trunk/cod/ Fixing error detection in codcif2rdf.pl and codsql2rdf.pl. |
2011511.cif 2011511.hkl |
| 186721 | 2016-09-22 | trunk/cod/ Making reuse of codcif2rdf.pl and codsql2rdf.pl between COD and TCOD easier: adjusting regular expressions for (T)COD IDs, adding configuration variables allowing to change database abbreviations. |
2011511.cif 2011511.hkl |
| 186720 | 2016-09-22 | trunk/cod/ Fixing a broken link in petition/index.html. Removing obsolete petition/index0.html. |
2011511.cif 2011511.hkl |
| 186719 | 2016-09-22 | trunk/cod/ Adding a RewriteRule to rewrite XXXXXXX.rdf@REV URLs. |
2011511.cif 2011511.hkl |
| 186718 | 2016-09-22 | trunk/cod/ Bugfix: fixing character set setting in headers, generated by codcif2rdf.pl and codsql2rdf.pl. |
2011511.cif 2011511.hkl |
| 186717 | 2016-09-22 | trunk/cod/ Bugfix: content of CIF file was passed incorrectly to cif2rdf in codcif2rdf.pl. |
2011511.cif 2011511.hkl |
| 186716 | 2016-09-22 | trunk/cod/ Updating cod-tools in lib/ to rev. 4712. |
2011511.cif 2011511.hkl |
| 186715 | 2016-09-22 | trunk/cod/ Fixing a bug in (T)COD ID sharding in codcif2rdf.pl. Updating cod-tools in lib/ to rev. 4711. |
2011511.cif 2011511.hkl |
| 186714 | 2016-09-22 | trunk/cod/ Adding configuration example file for codcif2rdf.pl. Fixing a comment in codcif2rdf.pl. |
2011511.cif 2011511.hkl |
| 186713 | 2016-09-22 | trunk/cod/ Adding a CGI script to generate RDFs from COD CIFs of specified revisions. |
2011511.cif 2011511.hkl |
| 186712 | 2016-09-22 | trunk/cod/ Small fixes in codsql2rdf.pl. |
2011511.cif 2011511.hkl |
| 186682 | 2016-09-21 | trunk/cod/ Adding a usage note for release.com. |
2011511.cif 2011511.hkl |
| 186681 | 2016-09-21 | trunk/cod/ Replacing Unicode codepoints from 128 with corresponding escape sequences by cif2rdf in release.com. |
2011511.cif 2011511.hkl |
| 186680 | 2016-09-21 | trunk/cod/ Bugfix: fixing PATH in release.com. |
2011511.cif 2011511.hkl |
| 186679 | 2016-09-21 | trunk/cod/ Adding archives of RDFs to quaterly releases. Updating cod-tools in lib/ to rev. 4710. |
2011511.cif 2011511.hkl |
| 186678 | 2016-09-21 | trunk/cod/ Adding standard Subversion header with keywords to release.com. |
2011511.cif 2011511.hkl |
| 186677 | 2016-09-21 | trunk/cod/ Adding release.com from 'archives/'. |
2011511.cif 2011511.hkl |
| 186516 | 2016-09-11 | trunk/cod/ (root@cod2.ibt.lt) Adjusting comments in .htaccess to reflect the situation in ^/trunk/. |
2011511.cif 2011511.hkl |
| 186515 | 2016-09-11 | trunk/cod/ (root@cod2.ibt.lt) With the MultiViews option disabled in the main apache2 config file, the .htaccess RewriRule for ^result(.*)$ now works. |
2011511.cif 2011511.hkl |
| 186124 | 2016-09-01 | trunk/cod/ Adding a news item about the release of DataWarrior. |
2011511.cif 2011511.hkl |
| 184709 | 2016-07-28 | trunk/cod/ Using more sophisticated method to parse Subversion logs in information_card.php so as to correctly parse log messages, containing separators (for example, rev. 20965 of COD entry 5910078), or other (nested) logs inside. |
2011511.cif 2011511.hkl |
| 184707 | 2016-07-28 | trunk/cod/ Turning off the warning about usage of param() in list context in cif-deposit.pl. Warning informs that such usage may lead to vulnerabilities if input is not sanitized, but since the script operates in tainted mode, it should generally be safe. |
2011511.cif 2011511.hkl |
| 184446 | 2016-07-13 | trunk/cod/ Collecting search clauses in an array for concatenation instead of appending search clauses to the end of a string in result.php. |
2011511.cif 2011511.hkl |
| 184445 | 2016-07-13 | trunk/cod/ Moving the code for old-style visualisation of search results from result.php to pseudotemplate tpl/result_old.php. |
2011511.cif 2011511.hkl |
| 184444 | 2016-07-13 | trunk/cod/ Moving the code for visualisation of search results from result.php to pseudotemplate tpl/result.php. |
2011511.cif 2011511.hkl |
| 184443 | 2016-07-13 | trunk/cod/ Bugfix: implementing more throughout check for empty strings in $id array in result.php. |
2011511.cif 2011511.hkl |
| 184442 | 2016-07-13 | trunk/cod/ Bugfix: setting $data['id'] to NULL if it's empty in result.php. |
2011511.cif 2011511.hkl |
| 184402 | 2016-07-12 | Adding news about the Rigaku s/m database reliase | 2011511.cif 2011511.hkl |
| 184401 | 2016-07-12 | Adding news about the PANalytical s/m database reliase | 2011511.cif 2011511.hkl |
| 184399 | 2016-07-12 | trunk/cod/ Turning off output buffering in result.php before printing out large amounts of data (mostly when returning query results). |
2011511.cif 2011511.hkl |
| 184398 | 2016-07-12 | trunk/cod/ Protecting against empty requests in babel_search.pl, which only pollute the logs. |
2011511.cif 2011511.hkl |
| 184395 | 2016-07-12 | trunk/cod/ Bugfix: fixing wrong logic in babel_search.pl. |
2011511.cif 2011511.hkl |
| 184393 | 2016-07-12 | trunk/cod/ Replacing system call with Perl mkdir in babel_search.pl. |
2011511.cif 2011511.hkl |
| 184392 | 2016-07-12 | trunk/cod/ Making the check for input parameter 'match' stricter in babel_search.pl. Removing unused code from babel_search.pl. |
2011511.cif 2011511.hkl |
| 184391 | 2016-07-12 | trunk/cod/ Adding a notice in session-login.php that inactive sessions are removed after 5 days. |
2011511.cif 2011511.hkl |
| 184390 | 2016-07-12 | trunk/cod/ Adding a notice in session-logout.php that inactive sessions are removed after 5 days. |
2011511.cif 2011511.hkl |
| 184364 | 2016-07-11 | trunk/cod/ Taking COD IDs as last digits in the output of 'obgrep'. |
2011511.cif 2011511.hkl |
| 184363 | 2016-07-11 | trunk/cod/ Moving duplicated code of CIF/HKL checking routines to cif-functions.php. |
2011511.cif 2011511.hkl |
| 184360 | 2016-07-11 | trunk/cod/ Rewording a message about added bibliography in tpl/edit-txt-cif.php. |
2011511.cif 2011511.hkl |
| 184358 | 2016-07-11 | trunk/cod/ Replacing non-interpolating quotes ('') with interpolating ones ("") in print in babel_search.pl. |
2011511.cif 2011511.hkl |
| 184357 | 2016-07-11 | trunk/cod/ Cleaning up the code of babel_search.pl. |
2011511.cif 2011511.hkl |
| 184356 | 2016-07-11 | trunk/cod/ Bugfix: printing forgotten HTTP REDIRECT header in babel_search.pl. |
2011511.cif 2011511.hkl |
| 184355 | 2016-07-11 | trunk/cod/ Bugfix: protecting against overwrite of $1 variable in babel_search.pl, remove_old_query(). |
2011511.cif 2011511.hkl |
| 184354 | 2016-07-11 | trunk/cod/ Redirecting to result.php?CODSESSION=<COD session> instead of re-printing the contents of the result page in babel_search.pl. |
2011511.cif 2011511.hkl |
| 184353 | 2016-07-11 | trunk/cod/ Bugfix: skipping empty ID request from GET/POST value 'id' in result.php. |
2011511.cif 2011511.hkl |
| 184351 | 2016-07-11 | trunk/cod/ Bugfix: queries were ran for result.php?id= (empty string), resulting in incorrect SQL queries. |
2011511.cif 2011511.hkl |
| 184350 | 2016-07-11 | trunk/cod/ Showing more informative page on request of babel_search.pl without any specified query. |
2011511.cif 2011511.hkl |
| 184349 | 2016-07-11 | trunk/cod/ Bugfix: wrong variable for SQL query was appendend to the error message. |
2011511.cif 2011511.hkl |
| 184348 | 2016-07-11 | trunk/cod/ Adding error reporting for SQL query for number of rows query in result.php in order to catch a frequent error. |
2011511.cif 2011511.hkl |
| 184303 | 2016-07-08 | trunk/cod/ Making structures-rss.pl more flexible by allowing more details to be configured via the configuration file. |
2011511.cif 2011511.hkl |
| 184301 | 2016-07-08 | trunk/cod/ Bugfix: updating Perl library path for ConfigLoader.pm in Perl CGI scripts. |
2011511.cif 2011511.hkl |
| 184281 | 2016-07-07 | trunk/cod/ Adding dependency 'libtext-unidecode-perl' to Debian 6.0.6 dependency installer. |
2011511.cif 2011511.hkl |
| 184238 | 2016-07-05 | trunk/cod/ Adding a special error message to inform the user that no file was selected to be uploaded in upload.php. |
2011511.cif 2011511.hkl |
| 184236 | 2016-07-05 | trunk/cod/ Using Perl module Text::Unidecode to compare latinised author names for prepublication and personal communication CIFs. |
2011511.cif 2011511.hkl |
| 184235 | 2016-07-05 | trunk/cod/ Setting binmode of STDERR to utf8 in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 184232 | 2016-07-05 | trunk/cod/ Bugfix: converting author names from CIF syntax to UTF-8 before passing them to cif_filter and other scripts, which perform UTF-8 to CIF conversion. Thus, author names containing ogoneks (i.e. [aeiu]) are not split in two by Perl split( ';' ). |
2011511.cif 2011511.hkl |
| 184220 | 2016-07-05 | trunk/cod/ Moving reCAPTCHA libraries to lib/. |
2011511.cif 2011511.hkl |
| 184219 | 2016-07-05 | trunk/cod/ Implementing means to disable the deposition on the server by blocking the cif-deposit.pl script. Reason for disabling the deposition can also be provided in order to inform the depositors. |
2011511.cif 2011511.hkl |
| 184218 | 2016-07-05 | trunk/cod/ Moving Perl modules from lib/ to lib/perl5/. |
2011511.cif 2011511.hkl |
| 184217 | 2016-07-05 | trunk/cod/ Displaying a message informing about successful addition of bibliography in edit-txt-cif.php. |
2011511.cif 2011511.hkl |
| 184216 | 2016-07-05 | trunk/cod/ Moving executables from lib/ to bin/. |
2011511.cif 2011511.hkl |
| 184198 | 2016-07-04 | trunk/cod/ Adding notification about misconfiguration of reCAPTCHA on the server. |
2011511.cif 2011511.hkl |
| 184197 | 2016-07-04 | trunk/cod/ Moving button_enable.js to lib/. |
2011511.cif 2011511.hkl |
| 184196 | 2016-07-04 | trunk/cod/ Reviewing TODO.txt and PROBLEMS.txt. |
2011511.cif 2011511.hkl |
| 184195 | 2016-07-04 | trunk/cod/ Removing Shell scripts dump.sh and check_cod_consistency.sh, reviewing install.sh. |
2011511.cif 2011511.hkl |
| 184194 | 2016-07-04 | trunk/cod/ Cleaning up config.php.example. |
2011511.cif 2011511.hkl |
| 184095 | 2016-07-01 | trunk/cod/ Bugfix: post-commit-update did not remove it's lock file upon finding that SVN working copy is locked. |
2011511.cif 2011511.hkl |
| 184067 | 2016-06-30 | trunk/cod/ Bugfix: deposition for prepublication entries used incorrect credentials for the final commit to Subversion repository. |
2011511.cif 2011511.hkl |
| 183966 | 2016-06-27 | trunk/cod/ Bugfix: replacing old PHP code start tokens (<?) with new ones (<?php). |
2011511.cif 2011511.hkl |
| 183671 | 2016-06-17 | trunk/cod/ Background of pages is white by default, or has to be set so in CSS, not individual pages. |
2011511.cif 2011511.hkl |
| 183661 | 2016-06-17 | trunk/cod/ Adding --no-run-if-empty option for 'xargs' invocation in delete_tmp_files. Bugfix: removing directories with rm -r option. |
2011511.cif 2011511.hkl |
| 183537 | 2016-06-16 | trunk/cod/ Explicitly adding links to favicon.ico to all root HTML pages. |
2011511.cif 2011511.hkl |
| 183533 | 2016-06-16 | trunk/cod/ Fixing quotes in 'Content-disposition: attachment;' directives, formed in result.php, since RFC 2616 recomments using double quotes for file names instead of single quotes. |
2011511.cif 2011511.hkl |
| 183532 | 2016-06-16 | trunk/cod/ Adapting babel_search.pl to rewrite links up one level instead of two. |
2011511.cif 2011511.hkl |
| 183480 | 2016-06-15 | trunk/cod/ Removing superseded numbers.php and zip.php, while adding rewrite rules to maintain the functionality of the removed scripts. |
2011511.cif 2011511.hkl |
| 183479 | 2016-06-15 | trunk/cod/ Synching with html/. Merge command: svn merge ^/html |
2011511.cif 2011511.hkl |
| 183475 | 2016-06-15 | trunk/cod/ Treating 'non-ascii symbols encountered'-like messages from cif_filter as notices, not warnings, since cif_filter replaced non-ascii symbols with XML entities, thus such files are eligible for the deposition. |
2011511.cif 2011511.hkl |
| 183469 | 2016-06-15 | trunk/cod/ Renaming 'delete_cod_tmp_files.sh' -> 'delete_tmp_files'. |
2011511.cif 2011511.hkl |
| 183467 | 2016-06-15 | trunk/cod/ Fixing a syntax error in result.php. |
2011511.cif 2011511.hkl |
| 183462 | 2016-06-14 | trunk/cod/ Adding a command line option '--script' for delete_cod_tmp_files.sh for debugging. |
2011511.cif 2011511.hkl |
| 183461 | 2016-06-14 | trunk/cod/ Updating maintenance script 'delete_cod_tmp_files.sh'. |
2011511.cif 2011511.hkl |
| 183442 | 2016-06-13 | trunk/cod/ Eliminating the rest of anchor links (<a href ...>), that were styled as buttons in tpl/validate.php. |
2011511.cif 2011511.hkl |
| 183441 | 2016-06-13 | trunk/cod/ Replacing button-like anchor links (<a href ...>) with real buttons in tpl/validate.php. |
2011511.cif 2011511.hkl |
| 183439 | 2016-06-13 | trunk/cod/ Bugfix: PHP variable was included in static HTML page. |
2011511.cif 2011511.hkl |
| 183435 | 2016-06-13 | trunk/cod/ Bugfix: wrong type of quotes was used for interpolated string. |
2011511.cif 2011511.hkl |
| 183433 | 2016-06-13 | trunk/cod/ Replacing strings 'cod' and 'COD' in text pages with site configuration variables, which are to be set in config.php in order to allow easier customisation of site and merging with site source of TCOD. |
2011511.cif 2011511.hkl |
| 183430 | 2016-06-13 | trunk/cod/ Synching with html/. Merge command: svn merge ^/html |
2011511.cif 2011511.hkl |
| 183304 | 2016-06-10 | trunk/cod/ Synching with html/. Merge command: svn merge ^/html |
2011511.cif 2011511.hkl |
| 183299 | 2016-06-09 | trunk/cod/ Synching with html/. Merge command: svn merge ^/html |
2011511.cif 2011511.hkl |
| 183293 | 2016-06-08 | trunk/cod/ Redirecting repository URL of cod-tools from cod.ibt.lt to www.crystallography.net. |
2011511.cif 2011511.hkl |
| 183291 | 2016-06-07 | trunk/cod/ Syncing with html/. Merge command: svn merge ^/html |
2011511.cif 2011511.hkl |
| 183289 | 2016-06-07 | trunk/cod/ Syncing with html/. Conflict in information_card.php was resolved manually. Merge command: svn merge ^/html |
2011511.cif 2011511.hkl |
| 183283 | 2016-06-07 | trunk/cod/ Syncing with html/. Merge command: svn merge ^/html |
2011511.cif 2011511.hkl |
| 183280 | 2016-06-06 | trunk/cod/ Syncing with html/. Conflict in tpl/validate.php was resolved manually. Merge command: svn merge ^/html |
2011511.cif 2011511.hkl |
| 183102 | 2016-05-27 | trunk/cod/ Anchoring rewrite rules for RSS to match exact URLs. |
2011511.cif 2011511.hkl |
| 183101 | 2016-05-27 | trunk/cod/ Fixing rewrite rules for URIs having the form of chemistry/stoichiometric)/XXXXXXX.{cml,sdf,smi,svg}. |
2011511.cif 2011511.hkl |
| 183100 | 2016-05-27 | trunk/cod/ Combining rewrite rules for {news,structures}.rss together. |
2011511.cif 2011511.hkl |
| 183099 | 2016-05-27 | trunk/cod/ Combining rewrite rules for URIs XXXXXXX.{cif,hkl} and {cif,hkl}/XXXXXXX.{cif,hkl} together. |
2011511.cif 2011511.hkl |
| 183098 | 2016-05-27 | trunk/cod/ Bringing back rewriting of URIs of form ^XXXXXXX.{cif,hkl}?revision=Y. |
2011511.cif 2011511.hkl |
| 183097 | 2016-05-27 | trunk/cod/ Fixing serving URIs of the form ^XXXXXXX.{cif,hkl}@Y. |
2011511.cif 2011511.hkl |
| 183093 | 2016-05-27 | trunk/cod/ Adding a workaround to .htaccess to correctly rewrite URLs when working under ~user/cod/ directory via mod_userdir. |
2011511.cif 2011511.hkl |
| 183050 | 2016-05-20 | trunk/cod/ Synching with ^/html. Merge command: svn merge ^/html |
2011511.cif 2011511.hkl |
| 182988 | 2016-05-17 | trunk/cod/ Fixing redirect directives in .htaccess to correctly identify 'deposit' and 'manage' shorthands. |
2011511.cif 2011511.hkl |
| 182971 | 2016-05-16 | trunk/cod/ Cleaning up the .htaccess: a single rule was introduced to strip possibly multiplicated 'cod' prefixes from URLs, effectively removing the need to duplicate every rule for the same purpose. |
2011511.cif 2011511.hkl |
| 182970 | 2016-05-16 | trunk/cod/ Removing a pair of rewrite/redirect directives from .htaccess after having them moved to top-level .htaccess. |
2011511.cif 2011511.hkl |
| 182968 | 2016-05-16 | trunk/cod/ Removing 'cod' prefix from link, generated by tpl/validate.php. |
2011511.cif 2011511.hkl |
| 182967 | 2016-05-16 | trunk/cod/ Removing 'cod' prefixes in some other places in information_card.php. |
2011511.cif 2011511.hkl |
| 182966 | 2016-05-16 | trunk/cod/ Removing 'cod' infixes from links, generated by information_card.php and result.php. |
2011511.cif 2011511.hkl |
| 182965 | 2016-05-16 | trunk/cod/ Fixing paths and rewrite directives to serve RSS. Adding Apache2 option 'Includes' to the .htaccess (was commented out before), thus maintaining the contract to keep all site configuration in the root directory of the site. |
2011511.cif 2011511.hkl |
| 182964 | 2016-05-16 | trunk/ Copying ^/html to ^/trunk/cod. |
2011511.cif 2011511.hkl |
| 182838 | 2016-05-07 | html/ (saulius@cod2.ibt.lt) Linking dependency directory 'Debian-6.0.6' as 'Debian-8.4'. |
2011511.cif 2011511.hkl |
| 182452 | 2016-05-03 | html/ (antanas@echidna.ibt.lt) Enhancement: updating the description of the deposition steps in the 'initiate_deposition.php' file. |
2011511.cif 2011511.hkl |
| 182451 | 2016-05-03 | cod/ (antanas@echidna.ibt.lt) Refactoring: removing an extra 'the' from the 'validate_select.php' script. |
2011511.cif 2011511.hkl |
| 182204 | 2016-04-19 | html/ (antanas@echidna.ibt.lt) Refactoring: rewording the error message that deals with hold periods that are too long in the 'cif-deposit.pl' script. |
2011511.cif 2011511.hkl |
| 181853 | 2016-04-06 | html/ Moving bibliography fetching code from tpl/edit-txt-cif.php to edit-txt-cif.php, leaving code only for HTML generation. |
2011511.cif 2011511.hkl |
| 181517 | 2016-04-05 | html/ Setting IUCr header for structures from IUCrJ and IUCrData journals. |
2011511.cif 2011511.hkl |
| 181464 | 2016-04-04 | html/ Adding SVN headers to HKL files. |
2011511.cif 2011511.hkl |
| 181463 | 2016-04-04 | html/ Putting Pubmed and crossref radio buttons on the same line in tpl/edit-txt-cif.php. |
2011511.cif 2011511.hkl |
| 181432 | 2016-04-04 | html/ Copying newest versions of {crossref,pubmed}-get-biblio from 'scripts' project, rev. 587. |
2011511.cif 2011511.hkl |
| 181333 | 2016-04-04 | html/ (antanas@kurmis) Refactoring: removing an extra 'the' from the deposition webpage text message. |
2011511.cif 2011511.hkl |
| 181332 | 2016-04-04 | html/ (antanas@kurmis) Refactoring: rewording the message that is displayed during the deposition stage. |
2011511.cif 2011511.hkl |
| 180688 | 2016-04-01 | html/ Updating cod-tools to rev. 4609. Copying newest versions of {crossref,pubmed}-{get-biblio,xml2mrk} from 'scripts' project. Copying in newest versions of SOptions.pm and SUsage.pm from 'libraries' project. |
2011511.cif 2011511.hkl |
| 180678 | 2016-04-01 | html/ Bugfix: excluding all _([local]_)?cod_data_source_(file|block) tags from the list of compared ones in determine_cif_hkl_relations(). Before, only _[local]_* tags were excluded, but, apparently, _cod_data_source_* tags were also meant to be skipped. |
2011511.cif 2011511.hkl |
| 178999 | 2016-03-22 | html/ Making structures with errors/warnings or duplicate flags appear among the search results by default when the search is performed by COD ID in the search.html page. |
2011511.cif 2011511.hkl |
| 178331 | 2016-03-18 | html/ Inserting journal names to 'jaltnames' and 'journals' tables in post-commit-sql-update, since MySQL triggers seem to experience race conditions while performing this task. Updating cod-tools to rev. 4604. |
2011511.cif 2011511.hkl |
| 177992 | 2016-03-07 | html/repository-hooks/ (coder@cod.narvalas.ibt.lt) Locking tables 'journals' and 'jaltnames' in an attempt to prevent failed triggers and slave server stalls. |
2011511.cif 2011511.hkl |
| 177007 | 2016-02-26 | html/ Adding Dublin core-based HTML meta keywords to information_card.php in order to provide COD entry bibliography in standard way. |
2011511.cif 2011511.hkl |
| 177002 | 2016-02-26 | html/ Removing incorrect indentation from information_card.php. |
2011511.cif 2011511.hkl |
| 176760 | 2016-02-19 | cif/2/ (antanas@kurmis) Replacing _[local]_cod_* tags with their equivalents from the COD CIF dictionary in multiple entries in subrange 2/01. |
2011511.cif 2011511.hkl |
| 176727 | 2016-02-18 | html/ Adding method of determination to the table in the CIF information card. |
2011511.cif 2011511.hkl |
| 176726 | 2016-02-18 | html/ Adding links to the description of duplicate entries in search.html. |
2011511.cif 2011511.hkl |
| 176631 | 2016-02-17 | html/ Replacing PHP function 'htmlentities' with 'htmlspecialchars' in tpl/edit-txt-cif.php. |
2011511.cif 2011511.hkl |
| 176624 | 2016-02-17 | html/ Replacing PHP function 'htmlentities' with 'htmlspecialchars' in order to encode all UTF-8 symbols instead of the subset, that has associated named entities. |
2011511.cif 2011511.hkl |
| 176506 | 2016-02-17 | html/ Regularising HTML in search.html. |
2011511.cif 2011511.hkl |
| 176505 | 2016-02-17 | html/ Excluding duplicates, theoretical structures and structures with errors from the search results by default, adding checkboxes to reinclude these structures to the search results. |
2011511.cif 2011511.hkl |
| 176450 | 2016-02-15 | html/ Skipping summary messages ('5 WARNING(s) encountered' and like). |
2011511.cif 2011511.hkl |
| 176437 | 2016-02-15 | html/ Updating cod-tools to revision 4575 in repository-hooks/. |
2011511.cif 2011511.hkl |
| 174505 | 2016-01-15 | BUG FIX: updating the RedirectMatch for /cod/manage to prevent redirecting TCOD deposition traffic to COD. | 2011511.cif 2011511.hkl |
| 174349 | 2016-01-11 | html/petition/ (antanas@echidna.ibt.lt) Modifying 'petition/index.html' page to validate as having the 'HTML 4.01 Strict' doctype. |
2011511.cif 2011511.hkl |
| 174348 | 2016-01-11 | cod/ (antanas@echidna.ibt.lt) Added the "Petition for Open Data in Crystallography" section to the table of contents in the "advices.html". |
2011511.cif 2011511.hkl |
| 174347 | 2016-01-11 | html/donators/ (antanas@echidna.ibt.lt) Adding a snippet of text about the Petition for Open Crystallography. |
2011511.cif 2011511.hkl |
| 174346 | 2016-01-11 | html/donators/ (antanas@echidna.ibt.lt) Updated the details (links) on how to obtain CIFs from CSD and ICSD in the "advices.html" page. |
2011511.cif 2011511.hkl |
| 174345 | 2016-01-11 | cod/ (antanas@echidna.ibt.lt) Removing most of the contact information of Eben Moglen from the "advices.html" page so it would not be abused by spam bots. The same (and updated) information can be found in his page the link to which was left intact. |
2011511.cif 2011511.hkl |
| 174344 | 2016-01-11 | html/donators/ (antanas@echidna.ibt.lt) Dividing discussion into subtopics in the "advices.html" page. |
2011511.cif 2011511.hkl |
| 174343 | 2016-01-11 | html/ (antanas@echidna.ibt.lt) Fixing a typo in the 'tpl/manage_depositions.php' page ('loggin' -> 'logging'). |
2011511.cif 2011511.hkl |
| 174342 | 2016-01-11 | html/ (antanas@echidna.ibt.lt) Fixing a typo in the 'manage_depositions.php' page ('loggin' -> 'logging'). |
2011511.cif 2011511.hkl |
| 174341 | 2016-01-11 | html/donators/ (antanas@kurmis) Modifying 'advices.html' page to validate as having the 'HTML 4.01 Strict' doctype and updating the page layout a bit. |
2011511.cif 2011511.hkl |
| 173689 | 2016-01-08 | html/donators/ (antanas@echidna.ibt.lt) Rephrasing several sentences in the 'advices.html'. |
2011511.cif 2011511.hkl |
| 173688 | 2016-01-08 | html/donators/ (antanas@echidna.ibt.lt) Updated broken links in the 'advices.html' page. |
2011511.cif 2011511.hkl |
| 173687 | 2016-01-08 | html/ (antanas@echidna.ibt.lt) Adding a snipet of JavaScript that upon clicking on images in the 'tips.html' page redirects to the 'search.html' page and sets the form fields values. |
2011511.cif 2011511.hkl |
| 173660 | 2016-01-07 | cod/ (antanas@echidna.ibt.lt) Fixing a typo in the petition/index.html ('informations' -> 'information'). |
2011511.cif 2011511.hkl |
| 173659 | 2016-01-07 | html/ (antanas@echidna.ibt.lt) Fixing several spelling errors in the tips.html and updating web link to the EnCIFer. |
2011511.cif 2011511.hkl |
| 173658 | 2016-01-07 | html/ Replacing e-mail address for bug reports with an image. |
2011511.cif 2011511.hkl |
| 173657 | 2016-01-07 | html/ Implementing search by DOI. |
2011511.cif 2011511.hkl |
| 173560 | 2016-01-06 | html/ Adding citation for Merkys2016 paper on cod-tools. |
2011511.cif 2011511.hkl |
| 173446 | 2016-01-04 | html/ Adding year 2016. |
2011511.cif 2011511.hkl |
| 171734 | 2015-12-24 | cod/ (saulius@drakonas) Perkeliu vaiku paveiksliukus i COD serveri. |
2011511.cif 2011511.hkl |
| 171691 | 2015-12-22 | html/ Bugfix: adapting skipped regular expressions in validate.php to changed output formatting of cif_cod_deposit. |
2011511.cif 2011511.hkl |
| 171688 | 2015-12-22 | html/ Bugfix: adapting regular expressions in validate.php to changed output formatting of cif_cod_deposit. |
2011511.cif 2011511.hkl |
| 171687 | 2015-12-22 | html/ Adding tmp/coca/, since it is required by ADOdb caching engine. Setting svn:ignore property to ignore all contents of tmp/coca/. |
2011511.cif 2011511.hkl |
| 171209 | 2015-12-09 | html/ Updating JChemPaint from 3.1.3 desktop application to 3.3-1210 applet. Removing old desktop application JAR file. |
2011511.cif 2011511.hkl |
| 171196 | 2015-12-09 | html/ Adding applet files for JChemPaint 3.3-1210 (from https://jchempaint.github.io). |
2011511.cif 2011511.hkl |
| 170676 | 2015-12-03 | html/ Increasing the readibility of cif-deposit.pl code. Reformatting a few error messages. |
2011511.cif 2011511.hkl |
| 170631 | 2015-12-01 | html/ Removing unused variables, homogenising the coding style. |
2011511.cif 2011511.hkl |
| 170570 | 2015-11-27 | Replacing a manually keyed-in number by an SSI command. | 2011511.cif 2011511.hkl |
| 170569 | 2015-11-27 | Updating the number of structures in "allcod.smi". | 2011511.cif 2011511.hkl |
| 170398 | 2015-11-18 | html/ Bugfix: unnecessary redepositions went undetected due to a bug in logic. |
2011511.cif 2011511.hkl |
| 170371 | 2015-11-17 | html/ Excluding _cod_depositor_comments from the list of compared tags. Thus, two CIF files, that differ only by the value of this tag, are considered identical and not suitable for redeposition. Updating cod-tools to revision 4293. |
2011511.cif 2011511.hkl |
| 170369 | 2015-11-17 | html/ Updating cod-tools to revision 4290. Adapting cif-deposit.pl to modified interfaces and explicit imports of cod-tools Perl modules. |
2011511.cif 2011511.hkl |
| 170338 | 2015-11-16 | html/ Adapting cif-deposit.pl to the changes in error message format. |
2011511.cif 2011511.hkl |
| 169765 | 2015-10-27 | html/ Refactoring: reducing number of files, produced by validate.sh, to one file per validation process: STDERR messages are no longer written to separate files, but prefixed with input file name and dumped into a single log file. Reducing number of queries for Bogomips and linear regression parameters. |
2011511.cif 2011511.hkl |
| 169755 | 2015-10-26 | html/ Removing a pair of no longer used lines from validate.php. |
2011511.cif 2011511.hkl |
| 169754 | 2015-10-26 | html/ Stopping validation immediately after discovering empty output of cif_filter. Ceasing to put validation output to separate temporary files in validate.sh. |
2011511.cif 2011511.hkl |
| 169753 | 2015-10-26 | html/ Merging STDERRs of separate validation scripts into the same file, since origin of each output message can now be easily found in each message. |
2011511.cif 2011511.hkl |
| 169752 | 2015-10-26 | html/ Moving the lowest-level logic, such as the decision and moving of the final output file, from validate.php to lib/validate.sh. |
2011511.cif 2011511.hkl |
| 169743 | 2015-10-26 | html/ Bugfix: forcing Fobs files out of 'pairing' state. Adding colour definition for pairing process in the status string. |
2011511.cif 2011511.hkl |
| 169742 | 2015-10-26 | html/ Improving code readability in validate.php. |
2011511.cif 2011511.hkl |
| 169741 | 2015-10-26 | html/ Dealing with inconsistency: 'NOTE' level messages belong to 'NOTICES' array of validated structure. |
2011511.cif 2011511.hkl |
| 169723 | 2015-10-23 | html/ Enabling hiding/unhiding errors/warnings/errors in the table of validation results. Reusing the same code from information_card.php. |
2011511.cif 2011511.hkl |
| 169722 | 2015-10-23 | html/ Commenting out style definition for monospaced messages, since it's doing more harm than good. |
2011511.cif 2011511.hkl |
| 169721 | 2015-10-23 | html/ Updating cod-tools to revision 4112 under lib/. |
2011511.cif 2011511.hkl |
| 169720 | 2015-10-23 | html/ Fixing style.css to preserve white space for cited excerpts in validation messages. |
2011511.cif 2011511.hkl |
| 169719 | 2015-10-23 | html/ Bugfix: using count() function to check length of an array instead of plain Perl-like comparison of the array reference. |
2011511.cif 2011511.hkl |
| 169717 | 2015-10-23 | html/ Using same code to process STDERRs of all validation scripts. |
2011511.cif 2011511.hkl |
| 169716 | 2015-10-23 | html/ Using same code to process STDERRs of both cif_fix_values and cif_cod_check. |
2011511.cif 2011511.hkl |
| 169715 | 2015-10-23 | html/ Rewriting analysis of cif_fix_values STDERR via UserMessage-compatible message parser. |
2011511.cif 2011511.hkl |
| 169714 | 2015-10-23 | html/ Bugfix: validation output data structure has key 'NOTICES' instead of 'NOTES'. |
2011511.cif 2011511.hkl |
| 169713 | 2015-10-23 | html/ Removing initial space prefix (' ' or '\t') from excerpts. |
2011511.cif 2011511.hkl |
| 169712 | 2015-10-23 | html/ Rewriting analysis of cif_cod_check STDERR via UserMessage-compatible message parser. |
2011511.cif 2011511.hkl |
| 169711 | 2015-10-23 | html/ Ceasing to analyse the STDOUT of cif_cod_check, since it no longer contains any information except "OK" messages for correct files. |
2011511.cif 2011511.hkl |
| 169710 | 2015-10-23 | html/ Removing unused variables, reducing count of output parsings. |
2011511.cif 2011511.hkl |
| 169709 | 2015-10-23 | html/ Adding a generic function to parse the outputs of cod-tools (or like) scripts. Rewriting output parsing of CIF & Fobs pairing results to use generic output parser. |
2011511.cif 2011511.hkl |
| 169517 | 2015-10-21 | html/ Bugfix: RDF generation crashed because old Perl module name. |
2011511.cif 2011511.hkl |
| 161120 | 2015-10-09 | BUG FIX: correcting reference to COD::Data::CIF::Diff in "cif-deposit.pl". | 2011511.cif 2011511.hkl |
| 161098 | 2015-10-08 | html/ Replacing links to information_card.php?cif=XXXXXXX with cod/XXXXXXX.html in messages about duplicate structures. |
2011511.cif 2011511.hkl |
| 161096 | 2015-10-08 | html/ Bugfix: copy of hash values were used instead of a reference. |
2011511.cif 2011511.hkl |
| 160962 | 2015-10-07 | Analysing the stderr output of cif_cod_check in validate.php and classifying warnings, errors and notes. | 2011511.cif 2011511.hkl |
| 160940 | 2015-10-07 | Changing the remaining path in cif-deposit.pl to cod-tools/. | 2011511.cif 2011511.hkl |
| 160938 | 2015-10-07 | Removing the cif-tools externals directory from the lib/. | 2011511.cif 2011511.hkl |
| 160937 | 2015-10-07 | Adding cod-tools as an -r4020 external of the cod-tools repo trunk. | 2011511.cif 2011511.hkl |
| 160846 | 2015-10-07 | Switching to rev. 4020 of cod-tools in lib/; adapting cif-deposit.pl. | 2011511.cif 2011511.hkl |
| 159035 | 2015-09-29 | Correcting the user e-mail existence test. | 2011511.cif 2011511.hkl |
| 159033 | 2015-09-29 | Removing HTML entity. | 2011511.cif 2011511.hkl |
| 159031 | 2015-09-29 | Now longer permitting to create account if the e-mail is already used for COD. | 2011511.cif 2011511.hkl |
| 158306 | 2015-09-25 | html/repository-hooks/ Adjusting paths of cod-tools scripts and libraries according to the changed layout of cod-tools project. |
2011511.cif 2011511.hkl |
| 158305 | 2015-09-25 | html/repository-hooks/ Updating cod-tools to rev. 3960 under repository-hooks/. |
2011511.cif 2011511.hkl |
| 158304 | 2015-09-25 | html/sql/ Adding values of 'method' from COD 'data' table. Generation command: codsql 'select file, method, svnrevision from data' > old-methods.tab |
2011511.cif 2011511.hkl |
| 155892 | 2015-09-12 | cod/ (saulius@koala.ibt.lt) Adding extra paragraph breaks in the new news announcements. |
2011511.cif 2011511.hkl |
| 155891 | 2015-09-12 | html/ (saulius@koala.ibt.lt) Adding news about the Data Warrior and the COD organic subset for this program. |
2011511.cif 2011511.hkl |
| 152339 | 2015-07-21 | html/ Fixing character set definitions (latin1 -> utf8) in CREATE TABLE statements for private COD database tables. Setting 'utf8_bin' collation for user names. |
2011511.cif 2011511.hkl |
| 152297 | 2015-07-20 | html/ Explicitly setting UTF-8 charset for MySQL connections in my_depositions.php. |
2011511.cif 2011511.hkl |
| 139469 | 2015-06-22 | html/ Simplifying the SQL query for journal names by selecting the distinct journal IDs in a subquery. |
2011511.cif 2011511.hkl |
| 139468 | 2015-06-22 | html/ Ceasing to use table 'journals' in SQL JOIN in queries for journal names. |
2011511.cif 2011511.hkl |
| 139317 | 2015-06-18 | html/ Adding citation for Grazulis2015 paper on restoring stoichiometric molecules. |
2011511.cif 2011511.hkl |
| 139265 | 2015-06-16 | html/ Removing --require-only-doi option from cif_cod_check and cif-deposit.pl calls for now to prevent empty bibliographies. |
2011511.cif 2011511.hkl |
| 139220 | 2015-06-15 | html/ Bugfix: value of $numbers_stderr was not always defined before splitting. |
2011511.cif 2011511.hkl |
| 139215 | 2015-06-15 | html/ Bugfix: process_script_output() was given string instead of an array. |
2011511.cif 2011511.hkl |
| 137470 | 2015-05-28 | html/ Renaming: lib/cif-tools -> lib/cod-tools. |
2011511.cif 2011511.hkl |
| 137404 | 2015-05-27 | html/ Updating cod-tools under html/repository-hooks/ to rev. 3400. Adapting the actual hook scripts. |
2011511.cif 2011511.hkl |
| 137383 | 2015-05-26 | html/ Bugfix: passing a file handle instead of a reference to it -- it seems that older versions of WWW::Curl::Easy (tested on 4.12) can accept both the handle and the reference, whilst newer versions (tested on 4.15) accept only the handle. |
2011511.cif 2011511.hkl |
| 137382 | 2015-05-26 | html/ Adding [QSA] flags for redirects via (\d{7}).html -> information_card.php?id=$1 in order to maintain "nice" links as: http://www.crystallography.net/cod/1000000.html?applet=jmol |
2011511.cif 2011511.hkl |
| 137039 | 2015-05-20 | html/ Using appropriate functions from CIF2COD.pm instead of calling cif2cod script. For now, this does not save any time, as parsing is still being done (using Perl CIF parser), but may help to improve the performance in future. |
2011511.cif 2011511.hkl |
| 136968 | 2015-05-19 | html/ Further cleaning of cif-deposit.pl code. |
2011511.cif 2011511.hkl |
| 136966 | 2015-05-19 | html/ Increasing the readability of cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 136915 | 2015-05-18 | html/ Fixing identation as well as some other constructions in order to increase readability of the script. |
2011511.cif 2011511.hkl |
| 136914 | 2015-05-18 | html/ Removing unused variables and functions. |
2011511.cif 2011511.hkl |
| 136913 | 2015-05-18 | html/ Explicitly setting C CIF parser for cif_cod_check. |
2011511.cif 2011511.hkl |
| 136906 | 2015-05-18 | html/ Accepting published structures in case DOI is a single piece of supplied bibliography, since resolvable DOIs should be associated with full bibliographic details in some external sources (e.g. PubMed or crossRef). cif-deposit.pl remains the single point to check whether supplied DOIs resolve. |
2011511.cif 2011511.hkl |
| 136188 | 2015-05-13 | html/ Checking space group operators in cif-deposit.pl, as they were checked only in Web interface, thus the check was able to be bypassed by depositing CIF files directly via cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 136148 | 2015-05-13 | html/ Explicitly setting C CIF parser for all scripts run from lib/validate.sh. Making the code of lib/validate.sh more readable. |
2011511.cif 2011511.hkl |
| 136147 | 2015-05-13 | html/ Updating cod-tools to rev. 3392 under lib/. Adding command line option --check-z for cif_cod_check to warn about the datablocks with missing data for Z estimation in the validation Web interface. |
2011511.cif 2011511.hkl |
| 136129 | 2015-05-12 | html/ Bugfix: feed title was set incorrectly. |
2011511.cif 2011511.hkl |
| 136126 | 2015-05-12 | html/ Making title of structures' RSS feed customisable in the configuration. |
2011511.cif 2011511.hkl |
| 136123 | 2015-05-12 | html/ Explicitly setting the icon (favicon.ico) in the headers of index.php and others that include tpl/head.php. |
2011511.cif 2011511.hkl |
| 136110 | 2015-05-12 | html/ Harmonising links in the table, generated by result.php. |
2011511.cif 2011511.hkl |
| 136048 | 2015-05-11 | html/ Using functions from CIFCODNumbers.pm instead of calling cif_cod_numbers script thus reducing processing time (no need to parse CIF file once more). |
2011511.cif 2011511.hkl |
| 136046 | 2015-05-11 | html/ Removing white space, that appears in the textfield of edit-txt-cif.php. |
2011511.cif 2011511.hkl |
| 136045 | 2015-05-11 | html/ Reporting empty file with a warning message. Preserving it's contents. |
2011511.cif 2011511.hkl |
| 136034 | 2015-05-11 | html/ Adapting codsql2rdf.pl to the changed layout of cod-tools project. Updating cod-tools (as cif-tools) under lib/ to rev. 3388. |
2011511.cif 2011511.hkl |
| 135716 | 2015-05-08 | html/ Updating cod-tools to revision 3381 under lib/. |
2011511.cif 2011511.hkl |
| 135597 | 2015-05-06 | html/ Updating cod-tools to rev. 3370 as lib/cif-tools. |
2011511.cif 2011511.hkl |
| 135396 | 2015-04-28 | html/ Merging branch 'andrius-lib-cleanup' into html/. A few required fixes were done by hand. Merge command: svn merge -r134044:135394 branches/andrius-lib-cleanup/ html/ |
2011511.cif 2011511.hkl |
| 135390 | 2015-04-27 | html/ Making cif-deposit.pl aware of _cod_data_source_file and _cod_data_source_block tags. The script is able to recognise and process new tags along with their _[local]_... counterparts. |
2011511.cif 2011511.hkl |
| 135281 | 2015-04-15 | html/ (saulius@koala.ibt.lt) Adding documentation to the COD query interface. |
2011511.cif 2011511.hkl |
| 134540 | 2015-03-31 | html/ Disallowing the robots to submit search queries. |
2011511.cif 2011511.hkl |
| 134447 | 2015-03-27 | html/ Removing spaces between COD IDs from the message of successful deposition. |
2011511.cif 2011511.hkl |
| 134422 | 2015-03-26 | html/ Presenting the summary of structure statuses in the form of links to the first structure of the type. |
2011511.cif 2011511.hkl |
| 134419 | 2015-03-26 | html/ Making the determination of cif-deposit.pl URL give correct results regardless of whether the prefix 'cod' is used or not. |
2011511.cif 2011511.hkl |
| 134344 | 2015-03-24 | html/ Displaying a pair of error messages, generated by information_card.php, using psedo-templating mechanism. |
2011511.cif 2011511.hkl |
| 134204 | 2015-03-20 | html/ Substituting 'Fobs' -> 'diffraction data' in some more captions. Updating cod-tools in lib/ to revision 3129. |
2011511.cif 2011511.hkl |
| 134203 | 2015-03-20 | html/ Converting tabulations to spaces (4 in information_card.php and result.php, 8 in index.php). |
2011511.cif 2011511.hkl |
| 134202 | 2015-03-20 | html/ Removing unnecessary indentation. |
2011511.cif 2011511.hkl |
| 134201 | 2015-03-20 | html/ Fixing regular expressions for the marking up of CIF tags. |
2011511.cif 2011511.hkl |
| 134200 | 2015-03-20 | html/ Reducing redundant code since the structure of validation output (ERRORS/WARNINGS/NOTICES) is now homogenuous. |
2011511.cif 2011511.hkl |
| 134199 | 2015-03-20 | html/ Homogenising the ERRORS/WARNINGS/NOTICES data structure. |
2011511.cif 2011511.hkl |
| 134197 | 2015-03-20 | html/ Separating error pages, generated by upload.php, to error messages, added to the pseudotemplates, and other material, which is presented as is. |
2011511.cif 2011511.hkl |
| 134196 | 2015-03-20 | html/ Catching and reporting file upload errors. |
2011511.cif 2011511.hkl |
| 134195 | 2015-03-20 | html/ Replacing temporary file names with supplied names in the output of cif_filter. Fixing markup of CIF tags. |
2011511.cif 2011511.hkl |
| 134190 | 2015-03-20 | html/ Removing a possibility to insert unescaped HTML into PHP-generated pages using crafted file names inside ZIP archives. |
2011511.cif 2011511.hkl |
| 134189 | 2015-03-20 | html/ Updating cod-tools in lib/ to revision 3128 (bugfix in cif_hkl_check). |
2011511.cif 2011511.hkl |
| 134188 | 2015-03-20 | html/ Cleaning up the tpl/validate.php code. |
2011511.cif 2011511.hkl |
| 134187 | 2015-03-20 | html/ Cleaning up the code for tpl/validate.php. |
2011511.cif 2011511.hkl |
| 134186 | 2015-03-20 | html/ Unifying the code to display errors and warnings for CIF and diffraction data. |
2011511.cif 2011511.hkl |
| 134185 | 2015-03-20 | html/ Fixing the display of general warnings for diffraction data files in tpl/validate.php. |
2011511.cif 2011511.hkl |
| 134181 | 2015-03-20 | html/ Changing button labels and other texts to reflect the acceptance of the powder diffraction traces. |
2011511.cif 2011511.hkl |
| 134140 | 2015-03-19 | html/ Updating cod-tools under lib/cif-tools to revision 3124. |
2011511.cif 2011511.hkl |
| 134130 | 2015-03-19 | html/ Replacing process file name with supplied file name in messages, generated by the pairing process in validate.php. |
2011511.cif 2011511.hkl |
| 134046 | 2015-03-18 | html/ Removing redundant subroutines, that can now be imported from Precision.pm Perl module. Updating cif-tools on lib/ to rev. 3119. |
2011511.cif 2011511.hkl |
| 134045 | 2015-03-18 | html/ Bugfix: removing newline symbol from the end of parsed message. |
2011511.cif 2011511.hkl |
| 134042 | 2015-03-18 | html/ Replacing tab symbols with 8 spaces in cif-deposit.pl: sed 's/\t/ /g' cgi-bin/cif-deposit.pl \ | sponge cgi-bin/cif-deposit.pl |
2011511.cif 2011511.hkl |
| 134038 | 2015-03-18 | html/ Replacing redundant and undertested local script cif_hkl_check with it's analog from the cod-tools. Updating the cif-tools under lib/ to revision 3118. |
2011511.cif 2011511.hkl |
| 132499 | 2015-02-26 | html/ Homogenizing the error messages, generated by upload.php. |
2011511.cif 2011511.hkl |
| 132497 | 2015-02-26 | html/ Adding tooltips to the validation/deposition stages in the progress indicator. |
2011511.cif 2011511.hkl |
| 132496 | 2015-02-26 | html/ Homogenizing the way the error messages are displayed in pages. |
2011511.cif 2011511.hkl |
| 132495 | 2015-02-26 | html/ Bugfix: empty account name and email are caught and reported in remind_email.php. |
2011511.cif 2011511.hkl |
| 132494 | 2015-02-26 | html/ Conversion of deprecated PHP syntax elements: '<?' -> '<?php' in tpl/check_user.php. |
2011511.cif 2011511.hkl |
| 132493 | 2015-02-26 | html/ Bugfix: wrong function was used to check whether the key 'validation_progress_stage' exists in tpl/head.php. |
2011511.cif 2011511.hkl |
| 132491 | 2015-02-26 | html/ Moving the insertion of progress indicator bar to tpl/head.php. |
2011511.cif 2011511.hkl |
| 132490 | 2015-02-26 | html/ Setting the default CSS path in bootstrap.php. |
2011511.cif 2011511.hkl |
| 132489 | 2015-02-26 | html/ Changing the format of error messages in view.php. |
2011511.cif 2011511.hkl |
| 132488 | 2015-02-26 | html/ Returning appropriate HTTP status codes when errors occur in view.php. |
2011511.cif 2011511.hkl |
| 132487 | 2015-02-26 | html/ Bugfix: adjusting view.php to the changed output of function check_out_from_prefix_tree(): empty strings are returned instead of null values. |
2011511.cif 2011511.hkl |
| 132479 | 2015-02-26 | html/ Detecting common 'svn cat' errors in view.php (file does not exist in given revision; given revision does not exist). |
2011511.cif 2011511.hkl |
| 132478 | 2015-02-26 | html/ Fixing the way the error messages are shown in view.php. |
2011511.cif 2011511.hkl |
| 132424 | 2015-02-25 | html/ Removing 'cod/' prefixes from relative URLs of RSS feed in tpl/head.html and latest deposited structure link in index.php. |
2011511.cif 2011511.hkl |
| 132421 | 2015-02-25 | html/ Bugfix: removing prefix 'cod' from generated URI for cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 132413 | 2015-02-25 | html/ Excluding unknown (having values '?') CIF tags instead of empty (having values '?' and '.') in lib/validate.sh. Updating 'cif-tools' in lib/ to rev. 3083. |
2011511.cif 2011511.hkl |
| 132382 | 2015-02-24 | html/ Conversion of deprecated PHP syntax elements: '<?' -> '<?php'. |
2011511.cif 2011511.hkl |
| 132359 | 2015-02-24 | cod/ (saulius@sauliaus.xen-server.ibt.lt) Removing the 'cod/' prefixes from local URIs. |
2011511.cif 2011511.hkl |
| 132309 | 2015-02-23 | html/ Adding a link to RSS feed next to 'What's new?' page. |
2011511.cif 2011511.hkl |
| 132131 | 2015-02-20 | html/ Fixing .htaccess to serve REF and RDF generation for URLs cod/XXXXXXX.{ref,rdf}, as accessing these URIs resulted in HTTP 500 error. |
2011511.cif 2011511.hkl |
| 131934 | 2015-02-17 | Changed default user to "example_DB_writer". |
2011511.cif 2011511.hkl |
| 131880 | 2015-02-16 | Changes to fix output of search from applet. | 2011511.cif 2011511.hkl |
| 131879 | 2015-02-16 | html/ Adding year 2015 to browse.html. Removing year 2004. |
2011511.cif 2011511.hkl |
| 131876 | 2015-02-16 | html/ Removing spaces before punctuation symbols '!?:' and after '~' in new.html. |
2011511.cif 2011511.hkl |
| 131772 | 2015-02-12 | html/ Bugfix: changing construction '<?' into '<?php', as this the first one is regarded as syntax error by newer PHP versions, at least at this: merkys@theospc11:aiida/ $ php -v PHP 5.5.9-1ubuntu4.5 (cli) (built: Oct 29 2014 11:59:10) Copyright (c) 1997-2014 The PHP Group Zend Engine v2.5.0, Copyright (c) 1998-2014 Zend Technologies with Zend OPcache v7.0.3, Copyright (c) 1999-2014, by Zend Technologies |
2011511.cif 2011511.hkl |
| 131760 | 2015-02-12 | html/ Installing dependencies in install.sh. Creating empty tmp/log.txt file. |
2011511.cif 2011511.hkl |
| 131279 | 2015-02-06 | html/ Issuing warnings in red in tpl/initiate_deposition.php. |
2011511.cif 2011511.hkl |
| 131277 | 2015-02-06 | html/ Beautifying the progress indicator. |
2011511.cif 2011511.hkl |
| 131276 | 2015-02-06 | html/ Fixing a pair of absolute links in new.html. |
2011511.cif 2011511.hkl |
| 131255 | 2015-02-06 | html/ Adding libphp-adodb to the list of dependencies. |
2011511.cif 2011511.hkl |
| 129360 | 2015-01-05 | cod/ (saulius@sauliaus.xen-server.ibt.lt) Merging the JSME use for structural formulae searches from the Saule's branch into the trunk: 618 svn merge -r128525:129339 branches/saule-result-php/ html/ 627 svn merge -r124427:128525 branches/saule-result-php/ html/ The conflict on html/tpl/head.html was resolved manually, with the new id/class assignment for "box_search_formula" element left as in the "html/" version. |
2011511.cif 2011511.hkl |
| 129021 | 2014-12-23 | html/ Relinking absolute paths to main COD server through 'cod' folder in some more pages. |
2011511.cif 2011511.hkl |
| 129020 | 2014-12-23 | html/ Relinking absolute paths to main COD server through 'cod' folder. |
2011511.cif 2011511.hkl |
| 128854 | 2014-12-19 | cod/ (saulius@sauliaus.xen-server.ibt.lt) Fixing COD information cards' (aka structure HTML pages) rewrite rules in such a way that the information_card.php implementation name is hidden from the user, http://www.crystallography.net/9999999.html are redirected to http://www.crystallography.net/cod/9999999.html (URIs with explicite "cod" database name), and the same html/ tree with unmodified rewrite rules work in private users' directories (~user/public_html/) without modification of the .htaccess rewrite rules. |
2011511.cif 2011511.hkl |
| 126632 | 2014-11-07 | cod/ (saulius@koala.ibt.lt) Fixing spelling mistake in 'robots.txt'. |
2011511.cif 2011511.hkl |
| 126269 | 2014-11-05 | Adding more news (about FPSM). | 2011511.cif 2011511.hkl |
| 126258 | 2014-11-05 | Adding news. | 2011511.cif 2011511.hkl |
| 125962 | 2014-10-29 | Adding the news about the new release of PANalytical software. | 2011511.cif 2011511.hkl |
| 125868 | 2014-10-25 | Updating robots.txt, asking not to follow /results.php* (this overloads MySQL). | 2011511.cif 2011511.hkl |
| 125847 | 2014-10-25 | Adding links to documentation explaining Z and Zprime. | 2011511.cif 2011511.hkl |
| 125846 | 2014-10-25 | Adding searches by Z and Zprime. | 2011511.cif 2011511.hkl |
| 125845 | 2014-10-25 | Adding rewrite rules for COD entries at specific revisions, by A.M. | 2011511.cif 2011511.hkl |
| 125810 | 2014-10-24 | html/repository-hooks/ (coder@cod.narvalas.ibt.lt) Addin request of the 'Z' and 'Zprime' columns to the 'post-commit-sql-update' hook. |
2011511.cif 2011511.hkl |
| 125804 | 2014-10-24 | html/ (root@cod.narvalas.ibt.lt) Adding the "Useful links" href to the COD Wiki page with the same title. |
2011511.cif 2011511.hkl |
| 125475 | 2014-10-16 | html/ Redirecting the links of COD structures in previous revisions to new URLs: view.php?f=<CODID>.<FILE_TYPE>&revision=<SVN_REVISION> => cod/<CODID>.<FILE_TYPE>@<SVN_REVISION> Old links are retained when authentication is required to view the structures (in case they are held on). |
2011511.cif 2011511.hkl |
| 125451 | 2014-10-16 | html/ Explicitly setting UTF-8 encoding for the connection to SQL database in result.php. |
2011511.cif 2011511.hkl |
| 125428 | 2014-10-15 | cod/html/ (saulius@kolibris) Setting default $reader_db_... values in 'bootstrap.php' if they are not set in 'config.php', so that mirrors can work without updating their configuration files. |
2011511.cif 2011511.hkl |
| 125427 | 2014-10-15 | Switching to the secondary read-only MySQL slave for searches. | 2011511.cif 2011511.hkl |
| 125426 | 2014-10-15 | Fixing comment syntax in "config.php.example" | 2011511.cif 2011511.hkl |
| 125423 | 2014-10-15 | cod/html/ (saulius@kolibris) Adding an example of the $reader_db_... configuration to 'config.php.example'. |
2011511.cif 2011511.hkl |
| 125286 | 2014-10-12 | Updating COD maintenance message (commented out). S.G. | 2011511.cif 2011511.hkl |
| 124942 | 2014-10-06 | html/ Supplying correct applet name in information_card.php: Jsmol -> JSmol. |
2011511.cif 2011511.hkl |
| 124554 | 2014-10-04 | cod/ (saulius@kolibris) Switching to revision 2852 of cod-tools in lib/. The 2852 revision fixies former incorrect (case-sensitive) DOI comparison that resulted in several duplicates. |
2011511.cif 2011511.hkl |
| 124440 | 2014-10-01 | Excluding shell scripts from CGI script list. | 2011511.cif 2011511.hkl |
| 124401 | 2014-09-30 | html/ (root@cod.narvalas.ibt.lt) Deleting all sh-based CGI scripts since they pose explicit security threat. |
2011511.cif 2011511.hkl |
| 124215 | 2014-09-25 | html/ Writing more decent code to create the configuration files. |
2011511.cif 2011511.hkl |
| 124213 | 2014-09-25 | html/ Adding installation script, which installs dependencies, sets required permissions for directories and copies *.config.example files to *.config. |
2011511.cif 2011511.hkl |
| 124023 | 2014-09-19 | html/ Fixing journal links in prepublication structures. |
2011511.cif 2011511.hkl |
| 124022 | 2014-09-19 | html/ Bugfix: number of rows was modified instead of number of entries per page. Ceasing to use AdoDB in result.php. |
2011511.cif 2011511.hkl |
| 124021 | 2014-09-19 | html/ Small enchancements: making 20 entries per result page default setting, prettifying the pagination form. |
2011511.cif 2011511.hkl |
| 124020 | 2014-09-19 | html/ Fetching SQL query results row by row instead of fetching all at once in order to reduce PHP memory usage. Fixing duplicated slashes ('//') in URLs. |
2011511.cif 2011511.hkl |
| 124018 | 2014-09-19 | html/ Merging branch branches/andrius-web-enhancements/ to html/: svn merge -r111687:HEAD branches/andrius-web-enhancements/ html/ |
2011511.cif 2011511.hkl |
| 123569 | 2014-09-09 | html/ Adding two news entries about presentation of COD and TCOD in the IUCr Congress and inclusion of COD into the list of recommended data repositories by the Nature Publishing Group journal Scientific Data. |
2011511.cif 2011511.hkl |
| 121987 | 2014-08-17 | Adding redirecto for a stable name pf the COD management interface. | 2011511.cif 2011511.hkl |
| 121061 | 2014-08-01 | html/ Accomodating data curation in the COD Web site: after logging in the Account Management Interface, the user can access his/her curated structures via 'View your curated entries' link. |
2011511.cif 2011511.hkl |
| 120997 | 2014-07-31 | html/ Implementing the possibility to curate COD entries, that are not deposited by the curator: the ranges of each depositor's curated entries are taken from 'curators' SQL table. |
2011511.cif 2011511.hkl |
| 120737 | 2014-07-24 | html/ Implementing mechanism to avoid signal race in post-commit-validation-update script by adding column 'svnrevision' to 'validation' table to make sure that we will always have validation messages from the newest revision of each structure. Caveat: the mechanism will fail in case when the validation of the structure of the newest revision produces no validation messages and the validation process of older structure finishes last producing messages. |
2011511.cif 2011511.hkl |
| 120736 | 2014-07-24 | html/ Fixing some bugs in error reporting of post-commit hooks. |
2011511.cif 2011511.hkl |
| 120735 | 2014-07-24 | html/ Changing the error reporting in post-commit reporitory hooks: each subscript, which is called from 'post-commit' script, writes it's messages to STDOUT and STDERR, whilst the responsibility of 'post-commit' is to collect and forward the messages to logger script. |
2011511.cif 2011511.hkl |
| 120733 | 2014-07-24 | html/ Putting validation messages, generated by cif_validate, to the 'validation' table. Options were copied from Name: Makefile URL: svn://www.crystallography.net/cod/cif/checks/Makefile Repository Root: svn://www.crystallography.net/cod Repository UUID: 63ed0e03-d63f-44cc-9660-0a71951c6e73 Revision: 120040 |
2011511.cif 2011511.hkl |
| 120728 | 2014-07-24 | html/ Moving code required for invocation of external programs to separate subroutine. |
2011511.cif 2011511.hkl |
| 120727 | 2014-07-24 | html/ Adding repository hooks to automatically update CIF validation messages in the 'validation' table of the COD SQL database. Currently the script is not called from the main post-commit hook as it runs cif_cod_check only. |
2011511.cif 2011511.hkl |
| 120617 | 2014-07-21 | html/ Bugfix: substructure search with 'babel', which is used with FastSearch database, is not capable to use SMARTS for input, thus the information on the search pages was changed to describe the current behaviour. |
2011511.cif 2011511.hkl |
| 118939 | 2014-07-03 | html/repository-hooks/ (coder@cod.narvalas.ibt.lt) Adding peg revision when cat'ing files from repository in 'post-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 118891 | 2014-07-02 | html/ (root@cod.narvalas.ibt.lt) Adding rewrite rules for computed COD chemistry files. |
2011511.cif 2011511.hkl |
| 116353 | 2014-06-10 | html/ (root@cod.narvalas.ibt.lt) Removing rewrite rules for PCOD from the COD .htaccess file since these rules will be commited to the PCOD-specific .htaccess. |
2011511.cif 2011511.hkl |
| 115580 | 2014-06-04 | html/ Bugfix: prepending regular expression used to match cod/\d{7}.html with a slash in order not to match other identifier domains, i.e. 'pcod': cod/([0-9]{7}).html -> /cod/([0-9]{7}).html |
2011511.cif 2011511.hkl |
| 114560 | 2014-05-27 | html/ Bugfix: properly setting the character set for the output of babel_search.pl. |
2011511.cif 2011511.hkl |
| 114559 | 2014-05-27 | html/ Bugfix: replacing operator '==' with 'eq' in string comparison. |
2011511.cif 2011511.hkl |
| 114558 | 2014-05-27 | html/ Bugfixes: returning an empty results page in case there are no substructure matches found; explicitly setting UTF8 for pages generated by babel_search.pl; stripping quotes from query string in result.php; fixing path for loading.gif. |
2011511.cif 2011511.hkl |
| 114552 | 2014-05-26 | html/ Bringing back search description in result.php. |
2011511.cif 2011511.hkl |
| 114551 | 2014-05-26 | html/ Fixing path for result.php script: cod/result.php -> result.php. |
2011511.cif 2011511.hkl |
| 114550 | 2014-05-26 | html/ Fixing relative path to CSS file in babel_search.pl. |
2011511.cif 2011511.hkl |
| 113841 | 2014-05-16 | html/ Separating two different states in query processing: accepted to the queue and currently processing. Displaying corresponding message. |
2011511.cif 2011511.hkl |
| 113840 | 2014-05-16 | html/ Bugfix: stripping two levels from relative paths instead of one in babel_search.pl. |
2011511.cif 2011511.hkl |
| 113824 | 2014-05-15 | html/ Cleaning up the code of 'babel_search.pl' a little bit. |
2011511.cif 2011511.hkl |
| 113823 | 2014-05-15 | html/ Fixing (quick and dirty) the issue with relative paths pointing nowhere due to the change in the working directory in 'babel_search.pl'. |
2011511.cif 2011511.hkl |
| 113785 | 2014-05-14 | html/ Reverse-merging r113784 through r113430 into '.htaccess': removing rules containing absolute (IP based) paths -- another solution should be used instead of it. |
2011511.cif 2011511.hkl |
| 113700 | 2014-05-13 | Rewrite header from 'Searching for SMILE' to 'Searching fro SMILES'. | 2011511.cif 2011511.hkl |
| 113686 | 2014-05-13 | html/ Using Perl's File::Spec module instead of Cwd for taking the absolute path to the CGI script, as the returned path does not need to be untainted. |
2011511.cif 2011511.hkl |
| 113681 | 2014-05-13 | html/ Bugfixes: skipping duplicate HTML header, cleaning (untainting) variable "$dir", before passing it to rmtree(). |
2011511.cif 2011511.hkl |
| 113644 | 2014-05-13 | html/ Deleting unused code from babel_search.pl. |
2011511.cif 2011511.hkl |
| 113643 | 2014-05-13 | html/ Directing STDERR of 'lsof' to /dev/null. |
2011511.cif 2011511.hkl |
| 113559 | 2014-05-12 | Pridedu loading paveiksleli. | 2011511.cif 2011511.hkl |
| 113433 | 2014-05-12 | html/ Adding 'lsof' to the lists of dependencies. |
2011511.cif 2011511.hkl |
| 113432 | 2014-05-12 | cgi-bin/ Pataisiau FPT parametro apdorojima. |
2011511.cif 2011511.hkl |
| 113431 | 2014-05-12 | html/ Pridedu klaidos pranesimus, atidarant failus. |
2011511.cif 2011511.hkl |
| 113430 | 2014-05-12 | Ilieju saule-result-php sakos darbus i trunk (svn merge -r89514:113428 branches/saule-result-php html). Kilo konfliktas jcp_search.html. Issprestas konfliktas pasirinkus naujasne versija, su 70 000 smiles. |
2011511.cif 2011511.hkl |
| 112696 | 2014-05-04 | html/ Deleting unused files under folder tests/. |
2011511.cif 2011511.hkl |
| 111691 | 2014-04-25 | html/ Bugfix: preventing SQL injection by escaping quotes in HTTP GET/POST parameter 'journal'. |
2011511.cif 2011511.hkl |
| 109770 | 2014-04-17 | html/ Styling collapsable HTML DIVs in information_card.php. |
2011511.cif 2011511.hkl |
| 109761 | 2014-04-17 | html/ Updating 'cif-tools' to rev. 2608 in lib/. |
2011511.cif 2011511.hkl |
| 109510 | 2014-04-15 | Adding news about COD-CrystalEye integration. |
2011511.cif 2011511.hkl |
| 109509 | 2014-04-15 | html/ Fixing broken 'Search by structural formula' collapsable link box. |
2011511.cif 2011511.hkl |
| 109508 | 2014-04-15 | html/ (saulius@koala.ibt.lt) Adding reference to Crystal Eye and Nick's and Peter's software and collected data. |
2011511.cif 2011511.hkl |
| 109507 | 2014-04-15 | html/ Replacing links to upload.html with links to initiate_deposition.php with corresponding link titles. Adding COD page header and footer to tips.html. Deleting obsolete index_new.html. |
2011511.cif 2011511.hkl |
| 109472 | 2014-04-14 | html/ Sorting news items by time in descending order, as Firefox does not sort them by their timestamps. |
2011511.cif 2011511.hkl |
| 109471 | 2014-04-14 | html/ Adding all structures, deposited on the day of reference, to the COD structures RSS feed. Adding a news item in new.html describing new RSS feeds. |
2011511.cif 2011511.hkl |
| 109470 | 2014-04-14 | html/ Creating RSS feed showing the newest COD structures. |
2011511.cif 2011511.hkl |
| 109466 | 2014-04-14 | html/ Removing empty lines from _publ_section_title and other text fields in placeholders of prepublication CIF files. |
2011511.cif 2011511.hkl |
| 109396 | 2014-04-11 | html/ Canonicalising tag names in generated placeholders. Updating cif-tools to rev. 2606 on lib/. |
2011511.cif 2011511.hkl |
| 109394 | 2014-04-11 | html/ Making tables in CIF information card ("Structure parameters" and "Version history") collapsable. |
2011511.cif 2011511.hkl |
| 109198 | 2014-04-09 | Strip whitespaces and '-' from the beginning and end of formulas. | 2011511.cif 2011511.hkl |
| 109197 | 2014-04-09 | Restoring message 'excluding biopolymers'. | 2011511.cif 2011511.hkl |
| 109196 | 2014-04-09 | Link to canonical URL for Homepage. | 2011511.cif 2011511.hkl |
| 109195 | 2014-04-09 | Redundant text and html tags removed. | 2011511.cif 2011511.hkl |
| 109191 | 2014-04-09 | html/ Enabling redeposition of multiple datablocks from the same publication. |
2011511.cif 2011511.hkl |
| 108995 | 2014-04-07 | html/ Preparing cif-deposit.pl script to accept CIF files with more than one datablock for redeposition. Refactoring: removing non-necessary variable $number_to_replace. |
2011511.cif 2011511.hkl |
| 108988 | 2014-04-07 | html/ Changing path to RSS feed of COD news: cod-news.rss -> cod/news.rss. |
2011511.cif 2011511.hkl |
| 108985 | 2014-04-07 | html/ Bugfix: changing database name from 'data' to 'cod' in news-rss.config.example. |
2011511.cif 2011511.hkl |
| 108984 | 2014-04-07 | html/ Bugfix: specifying '-type' option to header() explicitly as implicit specification was driving to 'HTTP/1.1 500 Internal Server Error' HTTP header. |
2011511.cif 2011511.hkl |
| 108983 | 2014-04-07 | html/ Adding CGI script 'news-rss.pl' to generate RSS feed from COD news SQL table. |
2011511.cif 2011511.hkl |
| 108975 | 2014-04-07 | html/ Marking CIF tags that have digits in their names, i.e. _atom_site_aniso_U_*, _geom_angle_atom_site_label_[123] etc. |
2011511.cif 2011511.hkl |
| 108949 | 2014-04-04 | html/ Reformatting the representation of external links in CIF information card: links 1:N (many links to the same database by one structure) is presented as <database name>: <link1>, <link2>, ... <linkN>. |
2011511.cif 2011511.hkl |
| 108923 | 2014-04-04 | html/ BUGFIX: passing empty array instead of empty string for run_command() subroutine in Perl ELSE statements of conditions with '? :' operator, where no option is needed. |
2011511.cif 2011511.hkl |
| 108919 | 2014-04-04 | html/ Displaying links to external cross-linking databases in information_card.php. |
2011511.cif 2011511.hkl |
| 108416 | 2014-04-02 | html/ Adding 'libwww-curl-perl' to the dependencies. |
2011511.cif 2011511.hkl |
| 108413 | 2014-04-01 | html/ Making 'Personal communications to COD' link in browse.html point to the search via result.php for COD structures in range [3500000-3999999]. |
2011511.cif 2011511.hkl |
| 108396 | 2014-03-31 | html/ Making '_journal_paper_doi' the only required bibliographic tag, provided the POST flag 'doi_only' is turned on at the time of deposition via cif-deposit.pl. Aforementioned flag is turned off by default, so previous behaviour (all bibliographic tags are required) is preserved by default. |
2011511.cif 2011511.hkl |
| 108392 | 2014-03-31 | html/ Adding GET/POST parameter to result.php to enable generation of human-readable request descriptions by external scripts that are calling result.php. |
2011511.cif 2011511.hkl |
| 108148 | 2014-03-27 | Minor edits of html and php strings. Corrected variable ref. ''. | 2011511.cif 2011511.hkl |
| 107929 | 2014-03-24 | Updating and commenting out maintenace message in "index.php". | 2011511.cif 2011511.hkl |
| 107886 | 2014-03-23 | cod/ (saulius@koala.ibt.lt) Switching to revision 2589 of cod-tools in lib. |
2011511.cif 2011511.hkl |
| 107634 | 2014-03-21 | html/ (saulius@koala.ibt.lt) Switching to revision 2572 of cod-tools in repository-hooks/. |
2011511.cif 2011511.hkl |
| 107633 | 2014-03-21 | cod/ (saulius@koala.ibt.lt) Switching to r2572 of cod-tools (with faster manual CIF lexer) in lib/. |
2011511.cif 2011511.hkl |
| 106874 | 2014-03-17 | Fixing typo: "Dublicate"->"Duplicate" | 2011511.cif 2011511.hkl |
| 104064 | 2014-03-10 | html/ Fixing wrong logic: additional search fields should contract (search within), not expand (append) the result. |
2011511.cif 2011511.hkl |
| 103721 | 2014-03-06 | html/ Implementing code to recognise and accept single datablock powder diffraction Fobs files. |
2011511.cif 2011511.hkl |
| 103498 | 2014-03-05 | html/ Fixing error message reporting that powder diffraction Fobs files can not be processed yet. |
2011511.cif 2011511.hkl |
| 103449 | 2014-03-04 | html/ Making error message about mismatching of CIF and Fobs data more informative. |
2011511.cif 2011511.hkl |
| 103380 | 2014-03-04 | html/ Updating 'cod-tools' in lib/ to revision 2502. |
2011511.cif 2011511.hkl |
| 103373 | 2014-03-03 | html/ Fixing a bug in cif-deposit.pl subroutine run_command(), allowing efficient detection of broken pipes. |
2011511.cif 2011511.hkl |
| 103371 | 2014-03-03 | html/ Updating TO-DO list. |
2011511.cif 2011511.hkl |
| 103367 | 2014-03-03 | html/ Enabling deposition of several Fobs files: uploaded files have their names preserved with cif_filter, concatenated and then splitted to datablocks. NB: only the first Fobs file's name is inserted into 'depositions' table currently. |
2011511.cif 2011511.hkl |
| 103363 | 2014-03-03 | html/ Using cif_filter to preserve original Fobs datablock and file names. |
2011511.cif 2011511.hkl |
| 103348 | 2014-03-02 | Fixing PLoS link and encoding in both "advices.html" files. | 2011511.cif 2011511.hkl |
| 103347 | 2014-03-02 | Adding rewrite rules for on-the-fly RDF generation. | 2011511.cif 2011511.hkl |
| 103330 | 2014-02-28 | html/ Updating the TO DO list. |
2011511.cif 2011511.hkl |
| 103329 | 2014-02-28 | html/ Explicitly specifying that C CIF parser must be used for parsing Fobs data. |
2011511.cif 2011511.hkl |
| 103325 | 2014-02-27 | html/ Filtering Fobs file before splitting it with 'cif_split_primitive'. |
2011511.cif 2011511.hkl |
| 103322 | 2014-02-27 | html/ Implementing options 'strict' and 'silent' to control whether the mismatch between any of supplied CIF and Fobs datablocks should be considered as critical deposition error. 'Strict' mode is default and 'silent' option turns the 'strict' mode off. |
2011511.cif 2011511.hkl |
| 103183 | 2014-02-26 | html/ Implementing deposition of many-to-many CIF and Fobs datablocks. |
2011511.cif 2011511.hkl |
| 103182 | 2014-02-26 | html/ Putting down some more tasks to be done for COD software. |
2011511.cif 2011511.hkl |
| 102371 | 2014-02-20 | html/ (saulius@koala.ibt.lt) Switching to revision 2482 of cod-tools in lib/. |
2011511.cif 2011511.hkl |
| 101288 | 2014-02-11 | html/ Adding a link to optimal structure in information cards for suboptimal structures. |
2011511.cif 2011511.hkl |
| 101233 | 2014-02-11 | html/ Adding a link to original structure in information cards for duplicate structures. |
2011511.cif 2011511.hkl |
| 99462 | 2014-01-31 | html/ Launching 'd2r-server' as www-data user instead of root. |
2011511.cif 2011511.hkl |
| 99446 | 2014-01-31 | html/ Removing old header from bin/d2r-server-init.d. |
2011511.cif 2011511.hkl |
| 99445 | 2014-01-31 | html/ Adding header for bin/d2r-server-init.d. Setting svn:keywords. |
2011511.cif 2011511.hkl |
| 99444 | 2014-01-31 | html/ Adding init.d script for 'd2r-server'. |
2011511.cif 2011511.hkl |
| 99209 | 2014-01-30 | html/ Switching from Perl module Digest::SHA1 to Digest::SHA, as Digest::SHA1 is not available for Ubuntu 12.04. Adding dependency installation script for Debian 6.0.6. |
2011511.cif 2011511.hkl |
| 97458 | 2014-01-29 | cod/ (saulius@koala.ibt.lt) Adding the default MySQL port, 3306, to the 'html/cgi-bin/cif-deposit.config.example' file. |
2011511.cif 2011511.hkl |
| 97455 | 2014-01-29 | html/ (saulius@koala.ibt.lt) Starting to collect package names (dependencies) that are needed to run a COD deposition server. |
2011511.cif 2011511.hkl |
| 97147 | 2014-01-29 | html/ Improving delete_cod_tmp_files.sh to remove process cache, temporary archives and file cache. |
2011511.cif 2011511.hkl |
| 96981 | 2014-01-29 | html/ Removing configuration variables $cif_hold_wc_path and $hkl_hold_wc_path from config.php.example, as these variables are no longer required. |
2011511.cif 2011511.hkl |
| 94444 | 2014-01-23 | html/ Bugfix: adjusting regular expressions to the new output format of 'cif_filter'. |
2011511.cif 2011511.hkl |
| 94240 | 2014-01-22 | html/ Ceasing the use of 'sql2rdf' in codsql2rdf.pl, as 'sql2rdf' was merged into 'cod2rdf'. Updating 'cif-tools' in lib/ to rev. 2432. |
2011511.cif 2011511.hkl |
| 94239 | 2014-01-22 | html/ Setting svn:keywords for codsql2rdf.pl. |
2011511.cif 2011511.hkl |
| 94189 | 2014-01-22 | html/ Extending searched fields to common name, chemical name and mineral name in result.php. |
2011511.cif 2011511.hkl |
| 94188 | 2014-01-22 | html/ Adapting error message parsing routines in validate.php to the changed outputs of cif_filter and cif_fix_values. |
2011511.cif 2011511.hkl |
| 93985 | 2014-01-21 | html/ Merging r93842 through r93984 into trunk: svn merge -r93841:HEAD ../branches/andrius-rdf-generation/ |
2011511.cif 2011511.hkl |
| 93924 | 2014-01-21 | html/ Making CIF file header selectable using POST option 'header'. Adding CrystalEye header to the configuration. |
2011511.cif 2011511.hkl |
| 93923 | 2014-01-21 | html/ Adding SVN header for CrystalEye from Name: SVN-header-COD-CY.txt URL: svn+ssh://pitonas.ibt.lt/home/xray/svn-repositories/xyz-extraction/deposit/SVN-header-COD-CY.txt Repository Root: svn+ssh://pitonas.ibt.lt/home/xray/svn-repositories/xyz-extraction Repository UUID: 9acf3947-1f02-0410-ae2a-984b57ad209b Revision: 2863 Node Kind: file Schedule: normal Last Changed Author: saulius Last Changed Rev: 2863 |
2011511.cif 2011511.hkl |
| 93858 | 2014-01-18 | Updating SMILES counts in graphic search pages. | 2011511.cif 2011511.hkl |
| 93854 | 2014-01-17 | html/ Relaxing the criterion for telling CIF files from other file types from MIME type string: all files, whose MIME starts by 'text/', are recognised as suitable for CIF data. |
2011511.cif 2011511.hkl |
| 93824 | 2014-01-14 | cod/ (saulius@koala.ibt.lt) Updating the Advisory Board list in the COD main page. |
2011511.cif 2011511.hkl |
| 93822 | 2014-01-13 | html/ Bugfixes in display of version history: making revisions with Fobs files appear in the same (descending) order with other revisions; making broken links to then-non-existant Fobs files disappear. |
2011511.cif 2011511.hkl |
| 91963 | 2014-01-02 | html/ Adding link to browse.html for browsing of publications from year 2014. |
2011511.cif 2011511.hkl |
| 91933 | 2013-12-28 | cif/ (saulius@koala.ibt.lt) Adding DOIs that could be assigned unambiguously to the range 2x CIFs. |
2011511.cif 2011511.hkl |
| 91924 | 2013-12-23 | Displaying DOI links to papers that have DOIs, and for journals that recommend COD. | 2011511.cif 2011511.hkl |
| 91337 | 2013-12-12 | html/ Bugfix: taking revision number from $_GET parameters in view.php. Removing revision time, timezone and other not-so-important information from version history table in information_card.php. |
2011511.cif 2011511.hkl |
| 91266 | 2013-12-10 | html/ Placing download links for CIF & Fobs in the same line in the version history table. |
2011511.cif 2011511.hkl |
| 91265 | 2013-12-10 | html/ Adding version history to CIF information cards. |
2011511.cif 2011511.hkl |
| 91015 | 2013-11-25 | html/ Adding a news item into 'News' about the recent addition of JSmol. |
2011511.cif 2011511.hkl |
| 91014 | 2013-11-25 | html/ Turning off anti-alising of JSmol applet. Making URLs for information_card.php shorter. |
2011511.cif 2011511.hkl |
| 91013 | 2013-11-25 | html/ Implementing structure preview using JSmol applet. Making JSmol default preview applet, implementing the possibility to switch between Jmol and JSmol applets. |
2011511.cif 2011511.hkl |
| 89797 | 2013-11-11 | html/ (saulius@koala.ibt.lt) Adding external repository link to 'svn://cod.ibt.lt/cod-tools/trunk' as 'cod-tools' in html/repository-hooks/. |
2011511.cif 2011511.hkl |
| 89512 | 2013-11-05 | html/ Adding '--use-attached-hydrogens' option to the call of 'cif2cod' in 'post-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 89418 | 2013-10-28 | html/ Making result.php accept a list of COD IDs, separated by commas (',') or UNIX newline symbols ('\n'). Percent sign ('%') is also allowed as a wildcard and is processed separately. |
2011511.cif 2011511.hkl |
| 89353 | 2013-10-22 | trunk/ I added target="blank" for links to home pages and results. |
2011511.cif 2011511.hkl |
| 89352 | 2013-10-22 | css/ Patikslinau komentara su nuoroda i morzilla kureju dropdown meniu be javascript pavyzdi. |
2011511.cif 2011511.hkl |
| 89351 | 2013-10-22 | The subset for substructure search holds at present more than 70000 structures |
2011511.cif 2011511.hkl |
| 89249 | 2013-10-11 | bin/ Add executable svn propset on bin/select-smiles-codid. |
2011511.cif 2011511.hkl |
| 89248 | 2013-10-11 | cod-trunk/ Changed note for JavaScript enabling. |
2011511.cif 2011511.hkl |
| 89246 | 2013-10-11 | cod-trunk/ Hide smiles' inputs, added notes about number of COD structures. Changed style of forms. Moved jars to new folders. Changed linkc from 'cod.ibt.lt' to 'www.chrystallography.net'. |
2011511.cif 2011511.hkl |
| 89245 | 2013-10-11 | cot-trunk/ Made style of label 'Search by structural formula' to change after it is checked. |
2011511.cif 2011511.hkl |
| 89243 | 2013-10-10 | cod-trunk/ Changed column name from 'cod_id' to 'codid' in table smiles. |
2011511.cif 2011511.hkl |
| 88767 | 2013-10-03 | html/ Implementing display of all actual news headlines in index.php. Each of the news headline can have its own expiry date now. |
2011511.cif 2011511.hkl |
| 88756 | 2013-10-02 | html/ (root@cod.narvalas.ibt.lt) Making "babel" a default choice for the search applets so far, and commenting out the program-choice radio button on the applet driver HTML files. When the MySQL tables with fingerprints are ready, the default will have to be changed to "mysql". |
2011511.cif 2011511.hkl |
| 88755 | 2013-10-02 | html/ (www-data@cod.narvalas.ibt.lt) Adding a quick-and-dirty fix for the relative paths so that the structural formula search applets work on the COD main server. |
2011511.cif 2011511.hkl |
| 88754 | 2013-10-02 | cod/ (saulius@koala.ibt.lt) Deleting the "html/smi" directory which should no longer be used. |
2011511.cif 2011511.hkl |
| 88753 | 2013-10-02 | cod/ (saulius@koala.ibt.lt) Moving all Babel FasSearch (*.fs) files created by Saule in "html/smi/" to our common smi/ directory. The graphical structural formulae search will use these files, at least temporarily. |
2011511.cif 2011511.hkl |
| 88702 | 2013-10-02 | bin/ Commenting out debug prints. |
2011511.cif 2011511.hkl |
| 88698 | 2013-10-02 | cgi-bin/ Changed configuration file name and '../tpl' to '$base_dir/tpl'. |
2011511.cif 2011511.hkl |
| 88676 | 2013-10-02 | config/ Added svn ignore for file fp-database.conf. |
2011511.cif 2011511.hkl |
| 88656 | 2013-10-02 | cod-trunk/config/ Remove example of configuration file 'DB-example.conf'. |
2011511.cif 2011511.hkl |
| 88644 | 2013-10-02 | html/ (saulius@koala.ibt.lt) Reformatting "tpl/head.html" to have correct identation for the new "Search by structural formula" menu item. |
2011511.cif 2011511.hkl |
| 88627 | 2013-10-02 | cod-trunk/config/ Configuration file was renamed from DB-example.conf and example configuration was made for user 'coder'. |
2011511.cif 2011511.hkl |
| 88561 | 2013-09-27 | cod-trunk/ Add example of config file for FP databaze. |
2011511.cif 2011511.hkl |
| 88560 | 2013-09-27 | cod-trunk/ I add scripts for creating DB, html for search menu. |
2011511.cif 2011511.hkl |
| 88559 | 2013-09-27 | cod-trunk/ Remove unnecessary copies. |
2011511.cif 2011511.hkl |
| 88558 | 2013-09-27 | cod-trunk/ I add *.html, *.pl scripts, css file and lib for jpc and jme search. |
2011511.cif 2011511.hkl |
| 88553 | 2013-09-26 | html/ (www-data@cod.narvalas.ibt.lt) Correcting Rigaku Web site hypereference in 'new.html'. |
2011511.cif 2011511.hkl |
| 88505 | 2013-09-24 | html/ Formatting "News" div to stand out of surrounding text. |
2011511.cif 2011511.hkl |
| 88501 | 2013-09-24 | html/ (www-data@cod.narvalas.ibt.lt) Adding a hyperlink to the new Rigaku instaler page to our "news" page". |
2011511.cif 2011511.hkl |
| 88500 | 2013-09-24 | html/ (www-data@cod.narvalas.ibt.lt) Adding news about the new edition of the Rigaku search-match database. |
2011511.cif 2011511.hkl |
| 88497 | 2013-09-23 | html/ Adding mineral name to the structure parameters table in information_card.php. |
2011511.cif 2011511.hkl |
| 88477 | 2013-09-19 | html/ Modifying cif-deposit.pl to add radiation probe, wavelength and type information to placeholders for prepublication material CIF files. |
2011511.cif 2011511.hkl |
| 88476 | 2013-09-19 | html/ Modifying cif-deposit.pl to add symmetry space group information to placeholders for prepublication material CIF files. |
2011511.cif 2011511.hkl |
| 88451 | 2013-09-13 | Updating the "new.html" file. | 2011511.cif 2011511.hkl |
| 88365 | 2013-09-06 | html/ Bugfix: fixing session id passing via previous and next structure links in information_card.php. |
2011511.cif 2011511.hkl |
| 88364 | 2013-09-06 | html/ Replacing links to 'information_card.php?cif=%' with 'cod/%.html'. |
2011511.cif 2011511.hkl |
| 88139 | 2013-09-04 | html/ Selecting the latest deposited COD structure ID from 'cod'.'data' table. |
2011511.cif 2011511.hkl |
| 88064 | 2013-08-29 | Adding _cod_database_fobs_code data item to all COD CIFs that have Fobs deposited and did not have this data item yet. | 2011511.cif 2011511.hkl |
| 87346 | 2013-07-30 | html/ Replacing link to archives/cod-cifs-mysql.tbz2 with archives/cod-cifs-mysql.txz in result.php, as .tbz2 archives are no longer generated. |
2011511.cif 2011511.hkl |
| 86332 | 2013-06-19 | Changing wording of the latest news and fixing the spelling of PANalytical. |
2011511.cif 2011511.hkl |
| 86331 | 2013-06-19 | Adding news about PANaltical database release. |
2011511.cif 2011511.hkl |
| 79220 | 2013-04-04 | html/ Skipping checks for temperature factors for prepublication CIF files. |
2011511.cif 2011511.hkl |
| 77874 | 2013-03-29 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) BUG FIX: correcting detection of updated paths, and implementing CIF syntax check that works for updated as well as for added new files. |
2011511.cif 2011511.hkl |
| 77723 | 2013-03-29 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Functionality enhancement: adding CIF syntax check to the pre-commit sql hook. |
2011511.cif 2011511.hkl |
| 77448 | 2013-03-27 | html/ (www-data@cod.narvalas.ibt.lt) Adding two more announcement templates to the 'index.php' script, both currently commented out. |
2011511.cif 2011511.hkl |
| 77445 | 2013-03-27 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Removing debug print from the 'post-commit-sql-update' script. |
2011511.cif 2011511.hkl |
| 77444 | 2013-03-27 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Updating the pre- and post-commit SQL hooks so that they consider only files in the cif/ directory of the repository. |
2011511.cif 2011511.hkl |
| 77443 | 2013-03-27 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Adding diagnostics of the duplicate data keywords in the 'cif2cod' output in the 'post-commit-sql-update' script. |
2011511.cif 2011511.hkl |
| 77251 | 2013-03-25 | html/ Clarifying message informing about missing database entry of replaced structure. |
2011511.cif 2011511.hkl |
| 77249 | 2013-03-25 | html/ Bugfix: fixing a bug that has blocked the releasing of prepublication CIF files. |
2011511.cif 2011511.hkl |
| 77248 | 2013-03-25 | html/ Removing unnecessary condition from the code. |
2011511.cif 2011511.hkl |
| 77247 | 2013-03-25 | html/ Moving all code for calculation of on hold date to one place. Updating cif-tools in lib/ to rev. 2164. Adding link to cif_select script in lib/. |
2011511.cif 2011511.hkl |
| 77245 | 2013-03-24 | html/ Uncommenting accidentally forgotten calls to rmtree(). |
2011511.cif 2011511.hkl |
| 77244 | 2013-03-24 | html/ Implementing structure 'placeholders' for prepublication structures -- main structure details like publication details and information of crystal cell are selected and put into publicly available CIF files. |
2011511.cif 2011511.hkl |
| 77243 | 2013-03-24 | html/ Bugfix: publication page numbers are visible in information card whenever any information on page numbers is known. |
2011511.cif 2011511.hkl |
| 77053 | 2013-03-22 | html/repository-hooks/ Adding 'onhold' to the list of fields that are taken from cif2cod. |
2011511.cif 2011511.hkl |
| 76864 | 2013-03-21 | html/ (root@cod.narvalas.ibt.lt) Updating lib and symlinks within it to work with the latest revision of the 'cod-tools' trunk. |
2011511.cif 2011511.hkl |
| 76861 | 2013-03-21 | html/ (root@cod.narvalas.ibt.lt) Fixing Unicode symbol ranges (actually, quoting them in a string so that they are printed as Perl hex character codes, not as symbols proper) in cgi-bin/cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 76639 | 2013-03-20 | html/ Changing the 'edit.php' script so that it does not use the deleted 'depositionid' column from the COD `data` table. |
2011511.cif 2011511.hkl |
| 76638 | 2013-03-20 | html/ (saulius@sauliaus.xen-server.ibt.lt) Changing the 'information_card.php' information card script so that it does not use the deleted 'depositionid' column from the COD `data` table. |
2011511.cif 2011511.hkl |
| 76637 | 2013-03-20 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) BUG FIX: correcting a nasty mistake where data from different CIFs were mixed up :(. Now the data should not be intermingled; the 'post-commit-sql-update' hook script however depends on the empty line between consecutive datablocks in the 'cif2cod' output. |
2011511.cif 2011511.hkl |
| 76636 | 2013-03-20 | html/repository-hooks/ (coder@cod.narvalas.ibt.lt) Modifying the pre- and post-commit SQL update hooks so that they take config file names derived from their own basenames. |
2011511.cif 2011511.hkl |
| 76635 | 2013-03-20 | html/repository-hooks/ (coder@cod.narvalas.ibt.lt) Renaming 'pre-commit.config.example' to 'pre-commit-sql-update.config.example' so that config files have the same name roots as the scripts for which they are designated. |
2011511.cif 2011511.hkl |
| 76589 | 2013-03-19 | html/cgi-bin/ Loosening the requirement for match between the author name supplied via Web forms and the publication author name from CIF file -- user name supplied via Web forms without diacritics, that are present in the _publ_author_name tag, is allowed to pass. |
2011511.cif 2011511.hkl |
| 76588 | 2013-03-19 | html/cgi-bin/ Allowing UTF8 symbols from range [\x{0080}-\x{7FFFFFFF}] to be used in user names in cgi-bin/cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 76550 | 2013-03-19 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Writing the latest update time stamps in the 'post-commit-sql-update' hook to the `data` table. |
2011511.cif 2011511.hkl |
| 76549 | 2013-03-19 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Writing timestamps in the 'pre-commit-sql-update' hook. |
2011511.cif 2011511.hkl |
| 76535 | 2013-03-19 | html/ (saulius@sauliaus.xen-server.ibt.lt) Deleting 'depositionid' column update from the 'cgi-bin/cif-deposit.pl', and deleting this column from the database. |
2011511.cif 2011511.hkl |
| 76346 | 2013-03-18 | html/ (root@cod.narvalas.ibt.lt) Changing the 'cgi-bin/cif-deposit.pl' script so that it is compatible with the commit hooks in the COD (testcod) repository. The patch for compatibility includes: a) commenting out 'LOCK TABLES' for `data` and `numbers` tables; b) checking whether a record with the same COD ID already exists, and refraining from the database write if it is. The current testcod database no longer has the `depositionid` column, as it currently is the 'cgi-bin/cif-deposit.pl' will fail if it attempts to write the database. Writing the 'depositionid' column to the `data` table should be removed from the 'cgi-bin/cif-deposit.pl' script. |
2011511.cif 2011511.hkl |
| 76296 | 2013-03-17 | html/repository-hooks/ (root@cod.narvalas.ibt.lt) Relaxing the 'ConfigLoader.pm' requirements for config file accessibility even further, to permit commits for both user 'coder' and user 'www-data' on the COD server. |
2011511.cif 2011511.hkl |
| 76280 | 2013-03-17 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Changing the '\n' escapes to newline ASCII symbols in the 'cif2cod' output in 'post-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 76279 | 2013-03-17 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) BUG FIX: setting UTF-8 encoding for the database connection; now UTF-8 text values are stored correctly, and not interpreted as Latin1 sequences. Just in case, also seting binmode() of VALUES to ":utf8" in the receiving end of the Perl pipe. |
2011511.cif 2011511.hkl |
| 76278 | 2013-03-17 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Replacin the 'post-commit' with a script that calls different sub-hooks one after another. |
2011511.cif 2011511.hkl |
| 76159 | 2013-03-16 | cod/ (saulius@koala.ibt.lt) Fixing PHP syntax error in html/config.php.example. |
2011511.cif 2011511.hkl |
| 76157 | 2013-03-16 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Writing and checking COD SVn revision when updating MySQL tables in 'post-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 76156 | 2013-03-16 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Commenting out the COD number range continuity check in 'pre-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 76155 | 2013-03-16 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Moving table locks closer to updates in 'post-commit-sql-update', so that tables are locked for shoter time. |
2011511.cif 2011511.hkl |
| 76154 | 2013-03-16 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) BUG FIX: correcting database updates from the 'cif2cod' results in the 'post-commit-sql-update' hook (the previous version would insert incorrect values!). Also, the 'post-commit-sql-update' now explicitely requests the fields that are necessary for the database from the cif2cod call instead of relying on the default 'cif2cod' behaviour. |
2011511.cif 2011511.hkl |
| 75633 | 2013-03-12 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Splitting the input CIF list into groups of 10 in the 'post-commit-sql-update' child script, to avoid oveusing RAM in the 'cif2cod' process. |
2011511.cif 2011511.hkl |
| 75631 | 2013-03-11 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Adding path to the CCIFParser library when calling 'cif2cod' in 'post-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 75630 | 2013-03-11 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Adding diagnostics of the child process status to 'post-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 75629 | 2013-03-11 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) More updates to error messages in 'pre-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 75628 | 2013-03-11 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Updating error message in 'post-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 75627 | 2013-03-11 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Updating pre- and post-commit SQL hooks to accmodate CIF file movements to other directories. |
2011511.cif 2011511.hkl |
| 75616 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Extending file addition functionality to handle also updates of CIFs in 'post-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 75615 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Implementing additions of new structures in 'post-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 75614 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Relaxing 'pre-commit-sql-update' check requirements -- permitting to commit into the allocated COD number range (if all new structures are completely within this range). |
2011511.cif 2011511.hkl |
| 75613 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Implementing SQL operators in 'post-commit-sql-update' to remove deleted structures from the COD tables. |
2011511.cif 2011511.hkl |
| 75612 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Corecting svn:keywords for 'post-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 75611 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Adding keywords and setting up svn:keywords for 'post-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 75610 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Correcting typo in script comments. |
2011511.cif 2011511.hkl |
| 75608 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Adding example of the pre-commit hook config file. |
2011511.cif 2011511.hkl |
| 75607 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Adding statements to update the 'numbers' table to 'pre-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 75606 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Fixing error messages and checks in 'pre-commit-sql-update' when more than one exsiting COD ID is found. |
2011511.cif 2011511.hkl |
| 75605 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Adidng correct check of the continuity of the newly allocated number range. |
2011511.cif 2011511.hkl |
| 75604 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Locking also table 'numbers' in 'pre-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 75603 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Moving the COD number range continuity check outside the table lock section. |
2011511.cif 2011511.hkl |
| 75602 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Adding the COD number continuity test to 'pre-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 75601 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Adding a check to 'pre-commit-sql-update' to make sure that the files with existing COD IDs are not added to repository anew. |
2011511.cif 2011511.hkl |
| 75600 | 2013-03-10 | Correcting typo in 'pre-commit-sql-update'. | 2011511.cif 2011511.hkl |
| 75599 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Adding COD filename checks to 'pre-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 75598 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Removing debug printouts from 'pre-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 75597 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) The 'pre-commit-sql-update' script now writes new COD IDs to the database and allows the commit if th writes were successfull. |
2011511.cif 2011511.hkl |
| 75596 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Swirching to the DBI-provided error messages in 'pre-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 75595 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Remove dpassword printouts ;) from the 'pre-commit-sql-update' error messages; using my error messages instead of those from DBI. |
2011511.cif 2011511.hkl |
| 75594 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Some refactoring of the 'pre-commit-sql-update' code -- moving the list of used executables closer to the beginning of the file. |
2011511.cif 2011511.hkl |
| 75593 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Setting up svn:keywords for 'pre-commit-sql-update'. |
2011511.cif 2011511.hkl |
| 75592 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Switching 'pre-commit-sql-update' library search path to the locally stored libraries -- more convienient and hopefully more portable. |
2011511.cif 2011511.hkl |
| 75591 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Updating the 'pre-commit-sql-update' script so that it reads the config file and connects to the database. NOTE, it uses a slightly modified ConfigLoader! (The modified ConfigLoader.pm is commited here as well). |
2011511.cif 2011511.hkl |
| 75590 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Setting up paths in 'pre-commit-sql-update' to find libraries and config files next to the script's dir. |
2011511.cif 2011511.hkl |
| 75589 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) The 'pre-commit-sql-update' now picks only CIFs and splits the changes into additions, deletions and modifictions. It also uses the DBI module (for the future) . |
2011511.cif 2011511.hkl |
| 75588 | 2013-03-10 | html/repository-hooks/ (saulius@sauliaus.xen-server.ibt.lt) Starting to create hooks for COD SQL database updates (pre- and post-commit). So far, only test printouts are implemented in the pre-commit hook. |
2011511.cif 2011511.hkl |
| 74888 | 2013-03-04 | html/ Adding years 2012 and 2013, removing years 200[0-2] from browse.html. |
2011511.cif 2011511.hkl |
| 74645 | 2013-03-01 | html/ Removing date. Placing 'Read more' link in the same line with the text. |
2011511.cif 2011511.hkl |
| 74644 | 2013-03-01 | html/ Making spaces above and below the 'News' minipage smaller. |
2011511.cif 2011511.hkl |
| 74643 | 2013-03-01 | html/ Adding date to the 'News' minipage. |
2011511.cif 2011511.hkl |
| 74642 | 2013-03-01 | html/ Adding "News" minipage to the index.php. Describing the search engine plugin in the "What's New?" page. |
2011511.cif 2011511.hkl |
| 74539 | 2013-02-28 | Adding SMILES for compounds with nitrogen atoms with four bonds. Also some minor fixes in CIFs. |
2011511.cif 2011511.hkl |
| 74189 | 2013-02-22 | html/ Improving the search mechanism: search by text also returns records, whose COD ID matches the query. Making COD OpenSearch plugin perform textual search by redirecting entered keywords to 'text1' field (instead of 'id'). |
2011511.cif 2011511.hkl |
| 74187 | 2013-02-22 | html/ Adding directive for Firefox to autodiscover the COD OpenSearch plugin. |
2011511.cif 2011511.hkl |
| 73216 | 2013-02-14 | html/ Reviewing TO DO list. Merging in some tasks from some other temporary TO DO lists. |
2011511.cif 2011511.hkl |
| 73204 | 2013-02-14 | html/ Adding COD OpenSearch plugin (compatible at least with firefox). To enable it, place a copy in ~/.mozilla/firefox/<profile>/searchplugins/ (tested on firefox 14.0.1). |
2011511.cif 2011511.hkl |
| 72796 | 2013-01-30 | html/ Making messages of the errors that occur during the bibliography fetch more informative. |
2011511.cif 2011511.hkl |
| 72795 | 2013-01-30 | html/ Beautifying the code of validate.php. |
2011511.cif 2011511.hkl |
| 72788 | 2013-01-29 | html/ Gathering various maintenance scripts, used for log rotation, backup dumps of the database and cleanup of temporary files, from ~coder/crontab/bin/ and /var/www/cron-jobs/ to folder 'maintenance-scripts'. |
2011511.cif 2011511.hkl |
| 70857 | 2013-01-06 | Adding QUERY_STRING printout to test.pl. | 2011511.cif 2011511.hkl |
| 61294 | 2012-06-28 | html/ Moving post-commit-cif2cod repository hook script from html/ to branches/cif-deposit-refactoring/, as this hook script is a part of refactored deposition system, and should be developed and tested together with refactored cif-deposit.pl script. |
2011511.cif 2011511.hkl |
| 61293 | 2012-06-28 | html/ Switching from the use of Unix::Syslog to Sys::Syslog in post-commit-cif2cod. |
2011511.cif 2011511.hkl |
| 61290 | 2012-06-28 | html/ Rewriting post-commit-cif2cod in Perl. |
2011511.cif 2011511.hkl |
| 61266 | 2012-06-25 | html/ Adding a new post-commit hook script post-commit-cif2cod. The purpose of the script is to update the information in the main COD database with the structure parameters from the added/changed files. The script is currently unable to create records, only to update (as files deposited via cif-deposit.pl are committed after having their records in the database created). Script is also unable to record the depositions of files, committed directly to the repository. |
2011511.cif 2011511.hkl |
| 60259 | 2012-06-14 | html/ Removing the closed menu item "Uploads" from the navigation panel. S.G. |
2011511.cif 2011511.hkl |
| 60242 | 2012-06-14 | html/ Updating the SMILES search form. |
2011511.cif 2011511.hkl |
| 60182 | 2012-06-14 | html/ Limiting all substructure searches to 20 seconds. |
2011511.cif 2011511.hkl |
| 60054 | 2012-06-14 | html/ Switching to rev. 2102 of cod-tools in html/lib/. |
2011511.cif 2011511.hkl |
| 60028 | 2012-06-14 | html/ Switching to fast search of substructures using smi/allcod.fs. |
2011511.cif 2011511.hkl |
| 59650 | 2012-06-13 | html/ BUGFIX: forcing post-commit-update to exit after running into the first locked folder of the working copy and spawning a child. Such constraint prevents exponential growth in number of post-commit-update processes. In the future same condition must be preserved: each update process is allowed to spawn at most one copy of itself. |
2011511.cif 2011511.hkl |
| 59462 | 2012-06-11 | html/ After the Debian system upgrade, which included PHP upgrade, the session ID is no longer forwarded to a new session when session name is changed; instead, the session ID seems to be reset. For our old code to work properly, manual setting of session ID was inserted into 'bootstrap.php'. S.G. |
2011511.cif 2011511.hkl |
| 55780 | 2012-05-06 | Adding a RedirectMatch from an "official", shorter COD deposition gateway URL. | 2011511.cif 2011511.hkl |
| 55095 | 2012-05-02 | Ading a simple CGI script and a redirection to convert CIF to REF on the fly. | 2011511.cif 2011511.hkl |
| 54355 | 2012-04-25 | html/ Adding percent sign to the list of symbols, allowed in uploaded file names. |
2011511.cif 2011511.hkl |
| 53670 | 2012-04-20 | html/ Adding a outline of new deposition system. |
2011511.cif 2011511.hkl |
| 53603 | 2012-04-20 | html/ Refactoring code in information_card.php. |
2011511.cif 2011511.hkl |
| 53572 | 2012-04-20 | html/ BUGFIX: Fobs data files added after deposition were mistakenly reported as missing in the COD structure data repository. After a quick fix, all Fobs data files, that are absent in COD structure data repository, will be treated as newly added, what is not correct in 100% cases, but enables adding Fobs data to previously deposited structures. |
2011511.cif 2011511.hkl |
| 53449 | 2012-04-19 | html/ Making PHP scripts fetch the structure directly from prepublication material repository when depositor wishes to view, download or update the structure. |
2011511.cif 2011511.hkl |
| 52794 | 2012-04-16 | html/ Bugfix: updating top folders of temporary working copy non-recursively. |
2011511.cif 2011511.hkl |
| 52792 | 2012-04-16 | html/ Switching to rev. 2049 of cod-tools in html/lib/. |
2011511.cif 2011511.hkl |
| 52622 | 2012-04-12 | Switching to rev. 2047 of cod-tools in html/lib/. | 2011511.cif 2011511.hkl |
| 51351 | 2012-04-05 | smi/4 Adding SMILES with fixed apparent N-centred radicals. Almost 40000 SMILES available! |
2011511.cif 2011511.hkl |
| 49642 | 2012-03-28 | html/ Removing configuration variables 'dir_cif*' and 'dir_hkl*', which are no longer used, from cgi-bin/cif-deposit.pl and from configuration example cgi-bin/cif-deposit.config.example. |
2011511.cif 2011511.hkl |
| 49592 | 2012-03-28 | html/ Making cif-deposit.pl check out local working copy of COD structure repositories each time the script is invoked. |
2011511.cif 2011511.hkl |
| 37594 | 2012-03-02 | trunk/ Leaving publication details in files, uploaded as personal communications to COD. Updating lib/cif-tools/ to revision 2003. |
2011511.cif 2011511.hkl |
| 37473 | 2012-03-02 | html/ Setting svn:externals property on lib/cif-tools/ to update to revision 2000 of svn://www.crystallography.net/cif-tools/branches/backports-to-r1778. |
2011511.cif 2011511.hkl |
| 37472 | 2012-03-02 | html/ Skipping the temperature factor checks while depositing data as personal communication material. |
2011511.cif 2011511.hkl |
| 36661 | 2012-03-01 | html/ Redirecting http://www.crystallography.net/cod/<COD-ID>.html style URIs to http://www.crystallography.net/<COD-ID>.html, not to information-card.php (to hide implementation mechanism). |
2011511.cif 2011511.hkl |
| 36620 | 2012-03-01 | html/: updating rewrite rules to match new CIF tree layout. | 2011511.cif 2011511.hkl |
| 34317 | 2012-02-22 | html/: updating the list of donators, including a direct link to AMCSD. | 2011511.cif 2011511.hkl |
| 34303 | 2012-02-15 | html/bibliography/ Adding periods after the publication titles in the *.txt bibliography files. |
2011511.cif 2011511.hkl |
| 34302 | 2012-02-15 | html/bibliography/ Unifying bibliography punctuations in *.txt bibliography files. |
2011511.cif 2011511.hkl |
| 34301 | 2012-02-15 | html/bibliography/ Adding citation of the Armel's 2005 JAC paper. |
2011511.cif 2011511.hkl |
| 34300 | 2012-02-15 | html/ Slightly changing formatting in 'index.php'. |
2011511.cif 2011511.hkl |
| 34299 | 2012-02-15 | html/ Committing the same HTML formatting of the 'index.php' file as in the main COD site, to facilitate merging. |
2011511.cif 2011511.hkl |
| 34298 | 2012-02-15 | html/ Updating the grant statement. |
2011511.cif 2011511.hkl |
| 34297 | 2012-02-15 | html/ Adding acknowledgements and the ling for the recent COD publication. |
2011511.cif 2011511.hkl |
| 34295 | 2012-02-14 | html/bibliography/ Regularising format in 'Grazulis2012.txt'. |
2011511.cif 2011511.hkl |
| 34294 | 2012-02-14 | html/bibliography/ Adding reference to our latest NAR paper in various formats. Adjusting BibTeX key in Grazulis2009.bib. |
2011511.cif 2011511.hkl |
| 34293 | 2012-02-14 | html/ Adding announcement about the new PANalytical database. |
2011511.cif 2011511.hkl |
| 32112 | 2012-02-03 | cif/: committing an update of 45+ thous files, with information appended from the originals. | 2011511.cif 2011511.hkl |
| 31990 | 2012-01-10 | html/ Updating .htaccess to redirect requests to <COD-ID>.html to the appropriately generated CIF information cards. |
2011511.cif 2011511.hkl |
| 29956 | 2011-11-09 | html/ Bugfix: bringing back the message 'No preview available: structure is on hold until ...', which had dissappeared due to programming error. |
2011511.cif 2011511.hkl |
| 29955 | 2011-11-09 | html/ As an experiment how the "general database IDs" could work, I add a resolver for PDB IDs into the .htaccess :). |
2011511.cif 2011511.hkl |
| 29954 | 2011-11-09 | html/ Harmonising data access URIs fo rthe rest of the COD data ranges, and adding an implementation (via rewrite rules) of the "extended database code" for PCOD. |
2011511.cif 2011511.hkl |
| 29953 | 2011-11-09 | html/ Adding rewrite rules to support old-style URIs with 'cif' designator in them (http://www.crystallography.net/cif/2002915.cif), and to support "extended database codes" like cod/1234567.cif in URIs, like http://www.crystallography.net/cod/2002915.cif or http://www.crystallography.net/cod/2002915.hkl S.G. |
2011511.cif 2011511.hkl |
| 29736 | 2011-11-07 | html/ Reviewing examples of configuration files. Replacing example values for configuration parameters with defaults where applicable. |
2011511.cif 2011511.hkl |
| 29735 | 2011-11-07 | html/ Adding a "Back" link to the bottom of page in my_depositions.php, which was not shown when user had no depositions. |
2011511.cif 2011511.hkl |
| 29734 | 2011-11-07 | html/ Allowing preview of prepublication structures in Jmol applet. Such preview is shown only to the depositor of structure. |
2011511.cif 2011511.hkl |
| 29599 | 2011-11-04 | html/ Adding time zone information to the timestamp of latest deposited structure, shown on index.php. |
2011511.cif 2011511.hkl |
| 28495 | 2011-10-28 | html/ Bugfix: skipping comparison of _cod_data_source_{file,block} tag values while comparing unit cell parameters etc. |
2011511.cif 2011511.hkl |
| 28494 | 2011-10-28 | html/ Adding a symbolic link to Precision.pm in lib/. |
2011511.cif 2011511.hkl |
| 28493 | 2011-10-28 | html/ Implementing the same policy concerning the pairing of CIF and HKL files as was recently implemented in cif-deposit.pl: datablock name is taken from _[local]_cod_data_source_block if such tag exists, otherwise, datablock name is taken as is titled in header data_*. |
2011511.cif 2011511.hkl |
| 28491 | 2011-10-28 | html/ Changing policy concerning matching of CIF and HKL files: datablock name is taken from _[local]_cod_data_source_block if such tag exists, otherwise, datablock name is taken as is titled in header data_*. |
2011511.cif 2011511.hkl |
| 28488 | 2011-10-28 | html/ Preserving _publ_section_title tag for prepublication and personal communication structures. Updating lib/cif-tools/ to revision 1778. |
2011511.cif 2011511.hkl |
| 28262 | 2011-10-24 | html/ Adding value 'To be published' as _journal_name_full for prepublication structures in case the journal name is unknown. |
2011511.cif 2011511.hkl |
| 28261 | 2011-10-24 | html/ Folding title of publication after printing out the CIF file using CIFTagPrint::print_cif() function. |
2011511.cif 2011511.hkl |
| 28259 | 2011-10-21 | html/ Fixing data presentation in information cards after the recent merge. |
2011511.cif 2011511.hkl |
| 28258 | 2011-10-21 | html/ Merging the ready-to use redeposition and sructure release code from the 'redeposition/' branche: svn merge -r24553:28207 branches/redeposition/ html/ Three conflicts on test resolved manually. |
2011511.cif 2011511.hkl |
| 28187 | 2011-10-14 | html/ Making links to deposition and account management interfaces point to corresponding pages in www.crystallography.net. |
2011511.cif 2011511.hkl |
| 27978 | 2011-10-12 | html/ Turning off the option --do-not-check-authors for cif_cod_check for validation process. Making messages (warnings and notices) for unnamed datablocks appear as 'general warnings/notices'. Switching to revision 1748 of cif-tools in lib/. |
2011511.cif 2011511.hkl |
| 27503 | 2011-10-05 | html/ Adding semicolons after numeric character references in information_card.php. |
2011511.cif 2011511.hkl |
| 27498 | 2011-10-05 | html/ Merging rollback functions from branches/redeposition/cgi-bin/cif-deposit.pl to trunk: svn merge -r24553:25154 branches/redeposition/cgi-bin/cif-deposit.pl html/cgi-bin/cif-deposit.pl |
2011511.cif 2011511.hkl |
| 27496 | 2011-10-05 | html/ Increasing time limit in zip.php. |
2011511.cif 2011511.hkl |
| 27494 | 2011-10-04 | html/ Restricting the update of top-level directory (${COPY}) when watched directories are initialised. |
2011511.cif 2011511.hkl |
| 27493 | 2011-10-04 | html/ Setting svn:keywords property for post-commit-update script to 'Author Revision Date URL Id'. |
2011511.cif 2011511.hkl |
| 27492 | 2011-10-04 | html/ Modifying the post-commit-update script to update only the last directory in the path of every changed file. folders that contain changed files. |
2011511.cif 2011511.hkl |
| 27491 | 2011-10-04 | html/ Fixed spelling: "Acknowlegements" -> "Acknowledgements". |
2011511.cif 2011511.hkl |
| 27315 | 2011-09-30 | html/ Returning default linear regression parameters from get_linear_regression_parameters() function in case either it is unable to make a connection to the database or an error occurs. |
2011511.cif 2011511.hkl |
| 27314 | 2011-09-30 | html/ Leaving a message about incomplete deposition in the system's log in case it is either unable to connect to database or unable to create a record. |
2011511.cif 2011511.hkl |
| 26861 | 2011-09-29 | html/: BUG FIX - correcting the .htaccess rewrite rule for .hkl files. | 2011511.cif 2011511.hkl |
| 26855 | 2011-09-28 | html/ Updating the 'new.html' news page: adding an anouncement of and a link to the new PANalytical database. |
2011511.cif 2011511.hkl |
| 26848 | 2011-09-28 | cif/2/, hkl/2/, html/ Reorganising CIFs of the range 2* into the "prefix-directory" tree. |
2011511.cif 2011511.hkl |
| 26841 | 2011-09-27 | html/ Initialising the variable $tpl['output'] as it is used in concatenation later. |
2011511.cif 2011511.hkl |
| 26839 | 2011-09-27 | html/ Changing the text of reference to original IUCr paper from paper bibliography to 'HTML' in information_card.php. |
2011511.cif 2011511.hkl |
| 26778 | 2011-09-25 | Adding transitional rewriting rules to present data in the prefix-tree subdirectories. | 2011511.cif 2011511.hkl |
| 26773 | 2011-09-25 | html/ Fixed typo (spoted by Peter Moeck): "biopolimer" -> "biopolymer". |
2011511.cif 2011511.hkl |
| 26609 | 2011-09-23 | html/ Prettifying download links in information_card.php. |
2011511.cif 2011511.hkl |
| 26606 | 2011-09-23 | html/ Fixing regular expressions in cif-deposit.pl to filter out complaints about undefined _journal_page_first and _journal_article_reference. |
2011511.cif 2011511.hkl |
| 26605 | 2011-09-23 | html/ Reorganising links to CIF and HKL files to the table. Formatting the link to original IUCr paper to look more citation-like. |
2011511.cif 2011511.hkl |
| 26603 | 2011-09-23 | html/ Removing 'acce code' field from information table in information_card.php. |
2011511.cif 2011511.hkl |
| 26598 | 2011-09-23 | html/ Making fields for minimum and maximum number of elements narrower. Bringing back 'has Fobs' flag to the cell contents table. Fixing the spacings between the fields for 1 to 8 elements. |
2011511.cif 2011511.hkl |
| 26597 | 2011-09-23 | html/ Enabling selecting structures whose number of distinct elements are between two user-defined values. Enabling the search by the number of distinct elements. |
2011511.cif 2011511.hkl |
| 26596 | 2011-09-23 | html/ Moving 'has Fobs' checkbox from the table for the search by cell contents to the table for the search by cell parameters. |
2011511.cif 2011511.hkl |
| 26566 | 2011-09-22 | html/ Updating the number of structures for Smarts search in the text of search.html. |
2011511.cif 2011511.hkl |
| 26234 | 2011-09-21 | html/ Removing syntactically incorrectly commented lines from css/style.css. |
2011511.cif 2011511.hkl |
| 26228 | 2011-09-21 | html/ Fixing the label of text area in tpl/edit-txt-cif.php to show 'Your (CIF|Fobs) File contents:' with respect to the file type. |
2011511.cif 2011511.hkl |
| 26224 | 2011-09-21 | html/donators/ Switching IUCr logo from GIF to PNG format, since the buggy MSIE does not display the file correctly. |
2011511.cif 2011511.hkl |
| 26222 | 2011-09-20 | html/ Adding rewrite rule to the .htaccess file to return Fobs data files for the http://www.crystallography.net/<COD-id>.hkl requests. |
2011511.cif 2011511.hkl |
| 26219 | 2011-09-20 | html/ Adding a check whether newly created ZIP archive exists or not. |
2011511.cif 2011511.hkl |
| 26218 | 2011-09-20 | html/ Making zip.php to skip missing and pre-publication files while creating an archive. |
2011511.cif 2011511.hkl |
| 26146 | 2011-09-19 | html/ Adding exit() calls after redirection with header( "Location: ..." ) in save.php, process_zip.php and process_cif.php. |
2011511.cif 2011511.hkl |
| 26029 | 2011-09-17 | cif/2/ Reverting changes of revision 25271: ( cd cif/2/; svn merge -r25271:25270 . ) The problem was that the reprocessed files from IUCr, although were more complete, "resurrected" data errors that were corrected in the previous recisions. The additional data that have been extracted during the reprocessing will have to be merged without overwriting the existing values in COD files, except some explicit and controlled cases (such as publication titles and chemical names). |
2011511.cif 2011511.hkl |
| 26024 | 2011-09-16 | html/bibliography/ Converting Bob's AMCSD paper reference to BiBTeX and EndNote formats. |
2011511.cif 2011511.hkl |
| 26023 | 2011-09-16 | html/bibliography/ Adding plain-text format bibliography of the Bob's AMCSD paper. |
2011511.cif 2011511.hkl |
| 26022 | 2011-09-16 | html/bibliography/ Adding paper title to the plain text bibliography. |
2011511.cif 2011511.hkl |
| 26021 | 2011-09-16 | html/bibliography/ Adding bibliography of the 2009 JAC COD paper. |
2011511.cif 2011511.hkl |
| 26020 | 2011-09-16 | html/ Switching to revision 1735 of cif-tools in lib/. |
2011511.cif 2011511.hkl |
| 26019 | 2011-09-16 | html/ Switching to revision 1734 of cif-tools in lib/. |
2011511.cif 2011511.hkl |
| 26018 | 2011-09-16 | html/ Adding exit() calls after redirection with header( "Location: ..." ) in save.php and validate.php. |
2011511.cif 2011511.hkl |
| 26017 | 2011-09-16 | html/ Adding a check to refuse requests to archive more than 5000 CIF files. |
2011511.cif 2011511.hkl |
| 25987 | 2011-09-15 | html/ Adding exit() calls after redirection with header( "Location: ..." ) to explicitly quit the script. |
2011511.cif 2011511.hkl |
| 25984 | 2011-09-15 | html/ Removing file upload PHP code from TransfertFichier.php. |
2011511.cif 2011511.hkl |
| 25983 | 2011-09-15 | html/ Adding a check whether 'searchSQL' variable exists in the session before checking whether it is empty or not in order to get rid of 'Undefined index' errors. |
2011511.cif 2011511.hkl |
| 25779 | 2011-09-14 | html/ Tidying the index.php: removing duplicate links, shortening texts, moving some other links to the navigation panel. Adding 'Documentation' tab to the navigation panel. Closing the data upload interface. |
2011511.cif 2011511.hkl |
| 25778 | 2011-09-14 | html/ Aligning the contents of the page search.html to the left. Updating the count of the structures available for substructure search. |
2011511.cif 2011511.hkl |
| 25777 | 2011-09-14 | html/ Aligning the header of the result.php page to the left. |
2011511.cif 2011511.hkl |
| 25776 | 2011-09-14 | html/ Fixing the animated picture in the bottom of the page. |
2011511.cif 2011511.hkl |
| 25271 | 2011-09-10 | cif/2/ Adding reporocessed IUCr CIFs for the years 1980-2010. The CIFs now contain more complete bibliography, substance names, correctly unfolded text fields (using the CIF line unfolding protocol), explicitely set cell angles, and _cod_data_source_block fields. |
2011511.cif 2011511.hkl |
| 25157 | 2011-09-09 | html/ Switching to revision 1731 of cif-tools in bin/. |
2011511.cif 2011511.hkl |
| 25002 | 2011-09-08 | html/ Forbidding to save a file having one of these statuses: 'deposited', 'validating', 'depositing', 'pairing', 'fault' in save.php. |
2011511.cif 2011511.hkl |
| 25001 | 2011-09-08 | html/ Disabling fetching of bibliography data for Fobs files as currently there are no procedures for propagating bibliography from data_global to other datablocks. |
2011511.cif 2011511.hkl |
| 25000 | 2011-09-08 | html/ Bugfix: cleaning session variables specifying DOI after fetching bibliography. |
2011511.cif 2011511.hkl |
| 24993 | 2011-09-08 | html/ Setting svn:externals property on lib/ to update cif-tools to revision 1728. Switching cif-deposit.pl from using cif2cod-new to cif2cod. |
2011511.cif 2011511.hkl |
| 24935 | 2011-09-08 | html/ Adding an ad-hoc filter to recognise files from commercial databases after uploading during deposition process. |
2011511.cif 2011511.hkl |
| 24925 | 2011-09-08 | html/ Setting svn:externals property on lib/ to update cif-tools to revision 1727. |
2011511.cif 2011511.hkl |
| 24924 | 2011-09-08 | html/ Adding a clarifying message about the input format of Fobs data. Adding a warning that files from commercial databases should not be uploaded without a permission. |
2011511.cif 2011511.hkl |
| 24566 | 2011-09-02 | html/ Aligning the main COD header to the left. |
2011511.cif 2011511.hkl |
| 24552 | 2011-08-30 | html/ Adding session ID to the links of the COD ID navigation bar in information_card.php to allow quicker reviewing of files deposited prior to publication. |
2011511.cif 2011511.hkl |
| 24551 | 2011-08-30 | html/ Making the depositor able to view his/her prepublication depositions by displaying a link to view.php in information_card.php if user's ID matches original depositor's ID. |
2011511.cif 2011511.hkl |
| 24550 | 2011-08-30 | html/ Adding TODO.txt -- a simple list of future plans for COD. |
2011511.cif 2011511.hkl |
| 24548 | 2011-08-29 | html/ Re-adding navigation bar for navigating through COD IDs and Fobs flag checking, that has disappeared due to merging. |
2011511.cif 2011511.hkl |
| 24512 | 2011-08-25 | html/ Changed "aviable" to "available" on the Web page. |
2011511.cif 2011511.hkl |
| 24275 | 2011-08-18 | html/ Restoring nice colouring of the information card lines. |
2011511.cif 2011511.hkl |
| 24274 | 2011-08-18 | html/css/ Merging back the hkl-deposit/ branch CSS: svn merge -r24269:24270 . |
2011511.cif 2011511.hkl |
| 24273 | 2011-08-18 | html/css/ Restoring the CSS prior to the hkl-deposit/ branch merge: svn merge -r24270:24269 . |
2011511.cif 2011511.hkl |
| 24272 | 2011-08-18 | html/ So far, commenting out the "Options +Includes" line since the COD server complains about it ("Options not allowed here"). |
2011511.cif 2011511.hkl |
| 24271 | 2011-08-18 | html/ Adding lines to switch on SSI to the .htaccess file. |
2011511.cif 2011511.hkl |
| 24270 | 2011-08-18 | html/ Merging new gunctionality from the hkl-deposit/ branch into the COD trunk: svn merge -r20492:22853 branches/hkl-deposit/ html/ The conflicts were resolved mostly favouring code from the hkl-deposit/ branch. |
2011511.cif 2011511.hkl |
| 22857 | 2011-08-03 | html/petition/: removing the rest of the e-mail lists. | 2011511.cif 2011511.hkl |
| 22856 | 2011-08-03 | html/petition/: removing petitioners e-mails, at the request of one petitioner. | 2011511.cif 2011511.hkl |
| 22840 | 2011-07-28 | html/: updating the new.html page (adding the news about the Rigaku software update). | 2011511.cif 2011511.hkl |
| 22812 | 2011-07-25 | Switching to revision 1719 of cif-tools in html/. | 2011511.cif 2011511.hkl |
| 22808 | 2011-07-25 | html/ Moving progress bar images to images/. |
2011511.cif 2011511.hkl |
| 22803 | 2011-07-24 | html/ Switching to revision 1718 of cif-tools in lib/. |
2011511.cif 2011511.hkl |
| 22778 | 2011-07-18 | html/ Fixing possible security hole in result.php: some values of form fields were inserted into SQL statements as integers directly without filtering. |
2011511.cif 2011511.hkl |
| 22561 | 2011-07-05 | html/ Adding a progress bar to the table in tpl/validate.php. |
2011511.cif 2011511.hkl |
| 22047 | 2011-07-01 | html/ Adding navigation bar to the top of information_card.php, allowing to cycle through COD IDs. |
2011511.cif 2011511.hkl |
| 21917 | 2011-06-30 | html/ Setting character set to UTF8 in head of generated HTML. |
2011511.cif 2011511.hkl |
| 21804 | 2011-06-28 | html/ Changing error level from E_USER_ERROR to E_USER_WARNING in upload.php, because E_USER_ERROR causes the script halt in newer versions of PHP. |
2011511.cif 2011511.hkl |
| 21466 | 2011-06-22 | html/ Determining the value for 'has Fobs' by checking the existence of HKL file. |
2011511.cif 2011511.hkl |
| 20953 | 2011-06-21 | html/ Bugfix: adding a newline symbol to the joined input lines in subroutine runCommand in order to prevent missing newlines in the end of CIF files. |
2011511.cif 2011511.hkl |
| 20925 | 2011-06-20 | html/ Adding a page my_depositions.php, which allows a user to view his/her depositions. |
2011511.cif 2011511.hkl |
| 20923 | 2011-06-17 | html/ Adding a script that allows to download structures right from the internal working copy of CIF or on-hold CIF repository. In latter case, user must be authenticated and his/her username must match the username of the depositor of the structure. |
2011511.cif 2011511.hkl |
| 20917 | 2011-06-16 | html/ Adding COD number to the title of the page. Moving precondition checks to the begining of the code. Restyling the information table. |
2011511.cif 2011511.hkl |
| 20491 | 2011-06-10 | html/ Making the background of undeposited structures red in tpl/validate.php. |
2011511.cif 2011511.hkl |
| 20403 | 2011-06-06 | html/ Adding a link to original IUCr paper for structures, whose acce_code is known in information_card.php. Tidying the HTML of the page. |
2011511.cif 2011511.hkl |
| 20396 | 2011-06-06 | html/ Making bibliography and file display warnings appear in boxes with padded text. |
2011511.cif 2011511.hkl |
| 20303 | 2011-06-03 | html/ Bugfix: treating the contents of CIF file as encoded with Latin-1 in case htmlentities() returns an empty string in tpl/edit-txt-cif.php. |
2011511.cif 2011511.hkl |
| 19948 | 2011-06-02 | html/ Explicitly setting the character set properties to be UTF8 in the CREATE TABLE statements for 'incomplete_depositions' table. |
2011511.cif 2011511.hkl |
| 19947 | 2011-06-02 | html/ Fixing an issue with rejection of author names, that contain non-alphanumeric UTF-8 symbols. Also adding a conversion of UTF-8 symbols in supplied author names to CIF symbols before comparing the supplied name with author name, given in CIF file. |
2011511.cif 2011511.hkl |
| 19946 | 2011-06-01 | html/ Reviewed PROBLEMS.txt. |
2011511.cif 2011511.hkl |
| 19917 | 2011-05-31 | html/ Adding a SQL condition in numbers.php to filter out COD numbers of retracted structures. |
2011511.cif 2011511.hkl |
| 19867 | 2011-05-30 | html/ Specifying the target for links to CIF information card in result.php to open information card in a new window. |
2011511.cif 2011511.hkl |
| 19865 | 2011-05-30 | html/ Merging code from branches/smarts/: svn merge -r19848:19859 branches/smarts/ html/ |
2011511.cif 2011511.hkl |
| 19862 | 2011-05-30 | html/ Merging the branches/subprocesses branch before removal: svn merge -r18745:19859 branches/subprocesses/ html/ Emerged conflicts were resolved manually. |
2011511.cif 2011511.hkl |
| 19847 | 2011-05-26 | html/ Performing the merge backwards to restore last correctly working version of search.html and result.php: svn merge -r HEAD:19697 html/ |
2011511.cif 2011511.hkl |
| 19844 | 2011-05-26 | html/ Adding news about the new Panalytical database into the "new.html" file. |
2011511.cif 2011511.hkl |
| 19747 | 2011-05-25 | html/ Changing SMILES collection path from ../smi/ to smi/ as is on the main COD server. |
2011511.cif 2011511.hkl |
| 19738 | 2011-05-25 | html/ Remaking the form for search by COD ID and SMARTS in search.html. |
2011511.cif 2011511.hkl |
| 19737 | 2011-05-25 | html/ Taking only the first 300 entries that match SMARTS query in result.php thus avoiding denial of service issues. |
2011511.cif 2011511.hkl |
| 19698 | 2011-05-24 | html/ Implementing the search by SMARTS using openbabel package. |
2011511.cif 2011511.hkl |
| 19697 | 2011-05-24 | html/ Redirecting the structure references in tpl/validate.php and tpl/edit-txt-cif.php to information_card.php. |
2011511.cif 2011511.hkl |
| 19696 | 2011-05-24 | html/ Restyling: merging similar style definitions into common ones and making padded boxes in tpl/edit-txt-cif.php appear for duplicates and undeposited structures. |
2011511.cif 2011511.hkl |
| 19684 | 2011-05-24 | html/ Switching the output mode of cif-deposit.pl, used by website scripts, from html to stdout. Rewriting the code for output handling. Setting external repository lib/cif-tools to update to revision 1695. |
2011511.cif 2011511.hkl |
| 19682 | 2011-05-24 | html/ Making output message, informing about duplicate structure, more compact when output mode is set to 'stdout'. |
2011511.cif 2011511.hkl |
| 19678 | 2011-05-24 | html/ Removing HTML tags from the success message, which is printed while working under mode of STDOUT. |
2011511.cif 2011511.hkl |
| 19676 | 2011-05-24 | html/ Adding HTTP headers to the output of cgi-bin/cif-deposit.pl when working with output_type set to STDOUT. |
2011511.cif 2011511.hkl |
| 19535 | 2011-05-17 | html/ Renaming repository-hooks/post-commit to repository-hooks/post-commit-update. Creating a link for backward compatibility. |
2011511.cif 2011511.hkl |
| 19532 | 2011-05-17 | html/ Explicitly setting the character set of mysql connection to UTF-8. |
2011511.cif 2011511.hkl |
| 19530 | 2011-05-17 | html/ Adding a parameter, setting the charset of utf-8, to all calls to htmlentities() function. |
2011511.cif 2011511.hkl |
| 19528 | 2011-05-16 | html/ Adding the measurement units to the values in information_card.php. Fixing a bug to display flags correctly. |
2011511.cif 2011511.hkl |
| 19527 | 2011-05-16 | html/ Adding a search by COD ID form to result.php. Adding COD ID with a link to information card to the each of the results in the search result table. |
2011511.cif 2011511.hkl |
| 19526 | 2011-05-16 | html/ Displaying the COD ID and timestamp of the latest depositing structure at index.php. |
2011511.cif 2011511.hkl |
| 19525 | 2011-05-16 | html/tmp/sessions/ Removing unused session folders as session names currently consist of characters from interval [a-v0-9] (each symbol is encoded with 5 bits). |
2011511.cif 2011511.hkl |
| 19497 | 2011-05-11 | html/ Taking primitive means to make result.php not so susceptible to HTML injections. |
2011511.cif 2011511.hkl |
| 19496 | 2011-05-11 | html/ Bugfix: fixing an issue with dissapearing 'Structure ... is being validated now' message. Rewriting the spaghetti code in tpl/validate.php, responsible for displaying messages. |
2011511.cif 2011511.hkl |
| 19494 | 2011-05-11 | html/ Describing two newly emerged problems in PROBLEMS.txt. |
2011511.cif 2011511.hkl |
| 19493 | 2011-05-11 | html/ Adding quick-and-dirty solution to prevent HTML injection in information_card.php. Renaming 'Fobs file' => 'HKL data file'. |
2011511.cif 2011511.hkl |
| 19483 | 2011-05-10 | html/ Adding a quick-and-dirty solution for obtaining Fobs files, which are associated with CIF files via same COD ID. |
2011511.cif 2011511.hkl |
| 19482 | 2011-05-10 | html/ Adding a page which shows an information card for a selected structure. Adding jMol library to jmol/. |
2011511.cif 2011511.hkl |
| 19440 | 2011-05-09 | html/ Bugfix: explicitly creating folders for structures from archives in order to avoid 'no such folder' errors arising when processing archives, that does not contain directory entries. |
2011511.cif 2011511.hkl |
| 19010 | 2011-05-06 | html/ Making validate.php to add web client ip address to the configuration file of cif_cod_deposit script. Setting svn:externals property on lib/ to update cif-tools/ to revision 1694. |
2011511.cif 2011511.hkl |
| 18995 | 2011-05-06 | html/ Merging the recent implementation by Andrius of the COD deposition web site that spawns CIF processing scripts as background subprocesses, and interactively reports their status: svn merge -r17142:18745 branches/subprocesses/ html/ The conflict on the html/lib/cif2cod-new symling appeared to be spurious and was reset manually: svn resolved html/lib/cif2cod-new (both links had the same target). |
2011511.cif 2011511.hkl |
| 18053 | 2011-04-15 | html/ Changing SQL lock status of table 'depositors' from WRITE to READ in cif-deposit.pl, because the script does not perform any writing to that table. |
2011511.cif 2011511.hkl |
| 17963 | 2011-04-13 | html/ Making post-commit hook script to see variable WATCHED_FOLDER as space-separated list of folders, that are required to be updated after applying changes to them. |
2011511.cif 2011511.hkl |
| 17275 | 2011-04-06 | html/ Adjusting cif-deposit.pl to take column names for filling in the COD structure entry table from the output of cif2cod-new script with an option '--print-header'. |
2011511.cif 2011511.hkl |
| 17122 | 2011-04-02 | html/ Adding a check if variable from configuration file of post-commit hook is defined. |
2011511.cif 2011511.hkl |
| 17035 | 2011-04-01 | html/ Adding a function to skip unneccessary updates of working copy after commits. Unneccessary update is the one after the revision, during which no changes were made to the folder, identified by WATCHED_FOLDER parameter in configuration file. |
2011511.cif 2011511.hkl |
| 17033 | 2011-04-01 | html/ Adding transliteration of non-Unix newline marks to Unix-style newlines. |
2011511.cif 2011511.hkl |
| 17014 | 2011-04-01 | html/ Adding substitution of special characters to html entities in tpl/edit-txt-cif.php. |
2011511.cif 2011511.hkl |
| 17008 | 2011-03-31 | html/ A ';' mark was forgot to be put at the end of the line. |
2011511.cif 2011511.hkl |
| 17007 | 2011-03-31 | html/ Restoring accidentally changed code in store.php -- path to cif-deposit.pl had been changed not because of svn merge fault, but such path is needed by the main site. |
2011511.cif 2011511.hkl |
| 17006 | 2011-03-31 | html/ Bugfix: removing unneccessary suffix 'cod/' from a path to cif-deposit.pl, generated in html/store.php. |
2011511.cif 2011511.hkl |
| 16999 | 2011-03-31 | html/ Switching to revision 1651 of cif-tools in lib/. |
2011511.cif 2011511.hkl |
| 16998 | 2011-03-31 | html/ Deleting the html/sql directory; the database creation SQL scripts for the currently running database are stored in the mysql/ directory. |
2011511.cif 2011511.hkl |
| 16997 | 2011-03-31 | html/ Adding new files that were created by the previous merge. |
2011511.cif 2011511.hkl |
| 16996 | 2011-03-31 | html/ Updating repository-hooks/ with the most recent files from the cif_deposit_cgi-script/ branch. |
2011511.cif 2011511.hkl |
| 16994 | 2011-03-30 | html/ Merging the new version of the development branch into the trunk: 588 for RANGE in 5267:9209 9210:11792 11797:16993; do svn merge -r${RANGE} branches/cif_deposit_cgi-script/ html/; done 589 svn st | grep ^C 590 svn resolved html/sql/cod-users/depositions-create.sql html/sql/cod-users/depositors-create.sql 591 cp branches/cif_deposit_cgi-script/sql/cod-users/depositors-create.sql html/sql/cod-users/depositors-create.sql 592 cp branches/cif_deposit_cgi-script/sql/cod-users/depositions-create.sql html/sql/cod-users/depositions-create.sql 593 emacs -nw html/sql/cod-users/depositors-create.sql html/sql/cod-users/depositions-create.sql 594 svn diff html/sql/cod-users/depositors-create.sql 596 svn st html/ 598 diff -r --exclude .svn --exclude lib branches/cif_deposit_cgi-script/ html/ | less Relevant revision ranges were merged from the cif_deposit_cgi-script/ branck into html/. Two conflicts (in the files depositions-create.sql and depositors-create.sql) were resolved manually: files were copied from the cif_deposit_cgi-script/ branch, and both the AUTO_INCREMENT start and the DEFAULT CHARSET=utf8 options were inserted using the emacs editor. After these manipulations, the html/ "trunk" and the cif_deposit_cgi-script/ branch have only thos differences that are needed for the html/ trunk to work correctly on the main COD server. |
2011511.cif 2011511.hkl |
| 11333 | 2011-02-15 | Adding COD feedback e-mail to the site title page. | 2011511.cif 2011511.hkl |
| 10889 | 2011-02-14 | html/lib/ Updating scripts 'crossref-get-biblio' and 'pubmed-get-biblio' from my 'scripts' repository ( Repository Root: svn://smakas.narvalas.ibt.lt/scripts Repository UUID: a41d18ea-2314-0410-90cb-ebc18a6e8e91 ) |
2011511.cif 2011511.hkl |
| 10192 | 2011-02-11 | html/ Switching to revision 1570 of cif-tools in lib/. |
2011511.cif 2011511.hkl |
| 9246 | 2011-02-09 | html/ Merging IUCr header selection code from branches/ into the main "trunk" html/: svn merge -r9209:9210 branches/cif_deposit_cgi-script/ html/ |
2011511.cif 2011511.hkl |
| 7474 | 2011-01-17 | html/ Switching to revision 1556 of cif-tools in lib/. |
2011511.cif 2011511.hkl |
| 7466 | 2011-01-15 | html/ Switching to revision 1551 of cif-tools in bin/ |
2011511.cif 2011511.hkl |
| 7465 | 2011-01-15 | html/ Switching to revision 1549 of cif-tools in lib/. |
2011511.cif 2011511.hkl |
| 7464 | 2011-01-15 | html/ Swiching to revision 1546 of cif-tools in lib/. |
2011511.cif 2011511.hkl |
| 6956 | 2011-01-13 | html/: updating Rigaku software link in the new.html file. | 2011511.cif 2011511.hkl |
| 5912 | 2011-01-09 | html/ Commenting out the New Year greetings -- till the next year :). |
2011511.cif 2011511.hkl |
| 5313 | 2011-01-03 | html/ Switching to revision 1530 of cif-tools in the COD web site trunk html/. |
2011511.cif 2011511.hkl |
| 5307 | 2010-12-31 | Adding a New Year postcard :) | 2011511.cif 2011511.hkl |
| 5304 | 2010-12-29 | html/ Switching to revision 1526 of cif-tools in lib/. |
2011511.cif 2011511.hkl |
| 5302 | 2010-12-27 | html/ Adding messages about a planned COD server shutdown, and about the normal operation restart. |
2011511.cif 2011511.hkl |
| 5268 | 2010-12-22 | html/ Merging the recent development done by Andrius from the cif_deposit_cgi-script/ branch into the html/ "trunk": svn merge -r3873:5267 branches/cif_deposit_cgi-script/ html/ Merged functions are: a) progress indicator; b) a subform to fetch bibliography data from CrossRef and PubMed while editing uploaded CIF files. |
2011511.cif 2011511.hkl |
| 5239 | 2010-12-18 | html/ Switching off caching for COD entry count (seting cache time to 0 in the dbCacheOperation call. |
2011511.cif 2011511.hkl |
| 4190 | 2010-12-17 | html/lib/ Fixing specific revision (1516) of cif-tools in lib/. |
2011511.cif 2011511.hkl |
| 4189 | 2010-12-17 | html/ Merging Acta Cryst. journal name case-sensitive merges into cgi-bin/cif-deposit.pl: svn merge -c4188 branches/cif_deposit_cgi-script/ html/ |
2011511.cif 2011511.hkl |
| 3939 | 2010-12-16 | html/cgi-bin/ Adding more journals to be assigned to range 72* in cif-deposit.pl. |
2011511.cif 2011511.hkl |
| 3873 | 2010-12-03 | html/ Merging Andrius' fix of the on-hold period default value warning into the trunk: svn merge -c3871 branches/cif_deposit_cgi-script/ html/ |
2011511.cif 2011511.hkl |
| 3870 | 2010-12-03 | html/ Merging Andrius' code to set the default on-hold period value: svn merge -r3867:3868 branches/cif_deposit_cgi-script/ html/ |
2011511.cif 2011511.hkl |
| 3869 | 2010-12-03 | html/ Merging the recent development of the cif_deposit_cgi-script/ branch into the html/ trunk: svn merge -r1749:3867 branches/cif_deposit_cgi-script/ html/ Functionality merged: a) recording of additional user data into the `depositors` table (scientific interests, scientific degree, institution that awarded the degree and its address); b) using mysqli_real_escape_string() instead of addslahes() to escape dangerous characters; c) inserting values back into the account creation form if the form needs to be corrected; d) some small typos were also fixed. |
2011511.cif 2011511.hkl |
| 3223 | 2010-11-14 | html/, branches/ BUG FIX: correcting 'cif_cod_check' option syntax in the 'validate.php' script. |
2011511.cif 2011511.hkl |
| 3221 | 2010-11-14 | html/ Switching off author name checks for 'published' structure depositions. |
2011511.cif 2011511.hkl |
| 1749 | 2010-11-04 | html/ Merging code changes from the recent branches/cif_deposit_cgi-script/ branche changes to the html/ trunk -- it contains new forms for creating user accounts and a fix against potential SQL injection. svn merge -r1712:1748 branches/cif_deposit_cgi-script/ html/ |
2011511.cif 2011511.hkl |
| 1712 | 2010-11-03 | html/ Improving communication between cif-deposit.pl and the COD deposition Web interface. Now structures that were rejected during the last deposition stage by the 'cif-deposit.pl' script are correctly identified as 'undeposited' and available for edits; duplicates are also detected and receive a separate class. For deposited structures, the 'Edit' button is removed. In addition, in several web forms wording was improved and language errors were corrected. The merge was: svn merge -r1607:1711 branches/cif_deposit_cgi-script/ html/ Two conflicts in SQL files were resolved manually. |
2011511.cif 2011511.hkl |
| 1630 | 2010-10-18 | html/ Relaxing password tests in cgi-bin/cif-deposit.pl, so that people with complex passwords can still log in. |
2011511.cif 2011511.hkl |
| 1627 | 2010-10-16 | html/ Fixing deposited COD CIF URL in cgi-bin/cif-deposit.pl html outputs. |
2011511.cif 2011511.hkl |
| 1624 | 2010-10-16 | html/ Increasing timout from 600 to 6000 in store.php. |
2011511.cif 2011511.hkl |
| 1621 | 2010-10-16 | html/ Directing journal Cryst.*Growth.*Des.* to COD range 45*. |
2011511.cif 2011511.hkl |
| 1609 | 2010-10-16 | html/ Changing CGI directory name for COD CGI scripts in store.php. |
2011511.cif 2011511.hkl |
| 1608 | 2010-10-16 | html/ Changing character sets of all provatecod database tables to UTF8, and reseting all autoincrement IDs to 1. |
2011511.cif 2011511.hkl |
| 1607 | 2010-10-16 | html/ Merging the recent updates from the cif_deposit_cgi-script branch: svn merge -r1526:1606 ../branches/cif_deposit_cgi-script/ This transfers to the main COD site the implamention of the automatic COD deposition web site, together with user account creation, CATPTCHA robot-vs-human test, password length checks. The automatic password reminder is only a stub for now. Also, a double op-in using e-mailed activations strings is not yet implemented. |
2011511.cif 2011511.hkl |
| 1549 | 2010-10-07 | html/ Deleting "and PCOD" phrase from Rigaku software support announcement, at the request of Akihiro Himeda (his e-mail 2010-10-07 06:21). |
2011511.cif 2011511.hkl |
| 1543 | 2010-10-06 | html/ Merging back the COD main site index.php: svn merge -r1531:1530 index.php |
2011511.cif 2011511.hkl |
| 1542 | 2010-10-06 | html/ Adding news about hosting of Rigaku files. |
2011511.cif 2011511.hkl |
| 1541 | 2010-10-06 | html/uploads/ Setting up svn:ignore pattern on uploads/cif-deposit/ to ignore the 'cod' directory. |
2011511.cif 2011511.hkl |
| 1531 | 2010-09-26 | html/ Merging the COD deposition Web-site code developed so far in branches/: svn merge -r1159:1525 ../branches/cif_deposit_cgi-script/ To avoid accidental erasing of the working site COD data, the cleanup.sh script was deleted. |
2011511.cif 2011511.hkl |
| 1464 | 2010-08-27 | html/ Addink acknowlegement of the Research Coucil of Lithiania for the Vilnius COD development group financing. |
2011511.cif 2011511.hkl |
| 1216 | 2010-06-14 | Adding directory 'statistics' to repository root. Move 'logs' folder from 'html/stats' to 'statistics'. Remove 'logs' from sub-folders 'stats' of every branch created so far. Reason: conservative usage of w/c disk space. |
2011511.cif 2011511.hkl |
| 1104 | 2010-04-16 | html/ BUG FIX: correcting search request for strict number of elements in result.php. Saulius Grazulis |
2011511.cif 2011511.hkl |
| 1058 | 2010-03-29 | html/ Changing result.php and celpar.php3 to return only non-retracted entires. |
2011511.cif 2011511.hkl |
| 1057 | 2010-03-29 | html/ Adapting the COD search scripts to work with the new database layout. |
2011511.cif 2011511.hkl |
| 1047 | 2010-03-20 | html/ Changing 'index.php' so that it does not include retracted structures into the record count presented on the COD front page. Saulius Grazulis |
2011511.cif 2011511.hkl |
| 1000 | 2010-02-17 | html/ Adding news about files for PANalytical users. |
2011511.cif 2011511.hkl |
| 999 | 2010-02-17 | html/ Setting up svn:ignore property on html/ to ignore archives/, data/, retracted/, hkl/ directories. |
2011511.cif 2011511.hkl |
| 998 | 2010-02-17 | html/ Adding "ignore-all" svn property for tmp subdirectory (svn:ignore = "*"). |
2011511.cif 2011511.hkl |
| 966 | 2010-01-30 | cif/ Adding _cod_database_code tags to all COD entries. Adding tag description to the cif_cod.dic dictionary so that COD entries can be validated. |
2011511.cif 2011511.hkl |
| 942 | 2010-01-17 | Adding a commented-out anouncement example into index.php file; it will be useful as a template to announce planned server shutdowns. |
2011511.cif 2011511.hkl |
| 853 | 2009-11-16 | cif/ Reconstructing spacegroup designators from the symmetry operators were possible. The comands used can be found in the log file reformat-spacegroups-2009.11.14.log committed with the current revision. Only lines that contained spacegroup designators were changed, and all files pass vcif test after the conversion. |
2011511.cif 2011511.hkl |
| 755 | 2009-06-09 | Changed "Recently" to "Recent" according to P.Moeck recommendation. | 2011511.cif 2011511.hkl |
| 751 | 2009-06-05 | html/: Adding information to index page about recently published paper. Acknowledgement of 'Crystal Impact GbR' support is mentioned. |
2011511.cif 2011511.hkl |
| 746 | 2009-05-26 | Changed layout of store.php: unified margins around elements. | 2011511.cif 2011511.hkl |
| 744 | 2009-05-25 | html/: Changes made according to previous documentation commit: o) mergesort function now accepts optional 4th argument, which is name of real data array, that might by used by comparison function; o) validate.php 'validComp' accepts 3rd argument - name of data array while first arguments now are just keys of that array; o) changed display (tpl/validate.php) to use sort array, instead of data array while displaying output, because original data array is no longer sorted, because sorting of it causes some related errors, such as invalid access of elements, as keys points to different elements after sort. o) process_*.php files now initiates 'validate_sort_order'. |
2011511.cif 2011511.hkl |
| 742 | 2009-05-25 | html/: Changed message from "Clear input fields" to "Remove selections and undo text changes" in 'tpl/store.php'. |
2011511.cif 2011511.hkl |
| 727 | 2009-05-15 | Added deposited files counter to 'validate.php'. Used to display link for new check selection at the top of page so far. | 2011511.cif 2011511.hkl |
| 726 | 2009-05-15 | Changed file extension search. | 2011511.cif 2011511.hkl |
| 713 | 2009-05-08 | Modified uploaded files handling. Process files (user uploaded and used for interactive web-edit) are stored not plain in 'tmp/' directory, but in subfolder 'tmp/uploads/'. Uploaded ZIP files are deleted after extraction (archive content copy is left at 'uploads/www-uploads/YEAR/WEEK/crude/*/archive_name.zip/', i.e. 'uploads/www-uploads/2009/19/crude/new/better.zip/1000009.cif'. Changed ignore rules on 'tmp/' directory. |
2011511.cif 2011511.hkl |
| 712 | 2009-05-08 | Modified storage style to remove extra whitespace and hide paragraph with all hidden elements. | 2011511.cif 2011511.hkl |
| 711 | 2009-05-08 | BUGFIX: Save all button was graying-out when ALL files were valid, i.e. no checking occured. | 2011511.cif 2011511.hkl |
| 710 | 2009-05-07 | Table style in "store.php" is changed if second attempt to store file fails. | 2011511.cif 2011511.hkl |
| 709 | 2009-05-07 | Make 'save all files' disabled if there are no valid files. | 2011511.cif 2011511.hkl |
| 708 | 2009-05-07 | Action buttons on top in 'store.php' are displayed only if there are more than 4 items. | 2011511.cif 2011511.hkl |
| 707 | 2009-05-07 | Modified 'validate.php' and 'store.php' layouts. Minified margins and font sizes in both. Added extra styling to 'store.php'. |
2011511.cif 2011511.hkl |
| 706 | 2009-05-07 | html/: Implemented mergesort in 'validate.php' before displaying results. |
2011511.cif 2011511.hkl |
| 704 | 2009-05-07 | Changed CIF validation array. Previously there there paralel arrays, and now one - single. |
2011511.cif 2011511.hkl |
| 703 | 2009-05-07 | html/: When user enters 'validate.php' before uploading a file, he gets redirected to 'validate_select.php'. |
2011511.cif 2011511.hkl |
| 696 | 2009-05-04 | Removed extensive styling for form submit buttons, but left margins for them, and reset buttons as well. |
2011511.cif 2011511.hkl |
| 695 | 2009-05-04 | Changed 'tpl/store.php' to display 'reset' button only if there are any visible input fields. | 2011511.cif 2011511.hkl |
| 694 | 2009-05-04 | Changed 'store.php': files for deposition are COPIED, and not MOVED. |
2011511.cif 2011511.hkl |
| 693 | 2009-05-04 | Several related modifications: o) missing _GET parameters in 'tpl/store.php' was causing store of multiple files when only one intended; o) misordered flags in 'tpl/store.php' were causing files overwrite in case, user has nothing selected; o) missing path in 'store.php' was causing polution of base 'checked' directory, in case user chooses new name. |
2011511.cif 2011511.hkl |
| 692 | 2009-05-04 | html/: Modified 'result.php': added check, if HKL data file does exist, and if yes - print link to it. |
2011511.cif 2011511.hkl |
| 690 | 2009-04-30 | Added new function: deposit all valid CIF files. Added new button in 'tpl/validate.php'. Simplified 'cif-functions.php' function 'fileMove': it now only returns status of 'rename'. Major code refactoring in 'store.php' and 'tpl/store.php'. Now these are adapted for many files handling at once, instead of only one file per time. |
2011511.cif 2011511.hkl |
| 689 | 2009-04-30 | Major BUGFIX: 'process_zip.php' was using same path for 'crude' and 'checked' files. Fixed this behaviour by using correct path. Minor changes in templates: o) 'tpl/validate_select.php' added check, if SID is defined before using it; o) 'tpl/validate.php' changed 'deposited' to 'saved for deposition'; o) created 'process' (fallback for process_zip and process_cif, so far) template; o) created 'default' template as fallback for any template. Changes in 'bootstrap.php' detecting template file to use (created fallback template files - look above). |
2011511.cif 2011511.hkl |
| 680 | 2009-04-24 | Changed index page message from "Updated daily" to "Currently there are" about structures count. | 2011511.cif 2011511.hkl |
| 676 | 2009-04-23 | One image link was still found broken. Fixed HTML. | 2011511.cif 2011511.hkl |
| 675 | 2009-04-23 | Merging branch 'tidy_images' where all pictures from core directory were moved to 'images' sub-directory. Were there some problems with moving images, so it was done manually: > for i in ../branches/tidy_images/images/*; do svn cp $i images/; done Merge command was: > svn merge -r 672:674 svn://cod.ibt.lt/cod/branches/tidy_images/ ./ |
2011511.cif 2011511.hkl |
| 671 | 2009-04-23 | Changed search tips: non-existant URL was replaced. | 2011511.cif 2011511.hkl |
| 670 | 2009-04-22 | html/: Merged results from branch, created to implement and run tests on scripts. Command used: $ svn merge -r 570:HEAD ../branches/make_tests/ . Additionally HTTP crawler was used to check, if deletion of files, occured here, did not affect entire site, i.e. if they are not referenced somewhere, and so causing HTTP 404 errors. |
2011511.cif 2011511.hkl |
| 664 | 2009-04-20 | Restoring the old Armel's COD installation instructions from the 2007.11.20 Armel's COD DVD. The instructions might be somewhat outdated, but it is a very good starting point, better than nothing. |
2011511.cif 2011511.hkl |
| 663 | 2009-04-20 | Adding data-origin.jpg, describing sources of published CIFs, from the Armel's server: wget http://sdpd.univ-lemans.fr/cod/data-origin.jpg |
2011511.cif 2011511.hkl |
| 662 | 2009-04-20 | BUGFIX: extra whitespace was causing "no results" while searching for strict no. of elements. | 2011511.cif 2011511.hkl |
| 646 | 2009-04-17 | APPEND (r645): remove "Thumbs.db" - images index file from Windows. | 2011511.cif 2011511.hkl |
| 645 | 2009-04-17 | Fix broken links. Remove "Thumbs.db" - images index file from Windows. | 2011511.cif 2011511.hkl |
| 569 | 2009-02-27 | Minor changes in CSS, according to layout changes. | 2011511.cif 2011511.hkl |
| 568 | 2009-02-27 | Adding some explaination in file selection page about validation process. | 2011511.cif 2011511.hkl |
| 567 | 2009-02-27 | Adding header in templates. Simple COD title. | 2011511.cif 2011511.hkl |
| 566 | 2009-02-27 | Changed layout: validation messages moved to next row. | 2011511.cif 2011511.hkl |
| 565 | 2009-02-27 | BUGFIX: session field for permanentStorage was being destroyed within store.php in case, file with the same name was found within deposition directory. |
2011511.cif 2011511.hkl |
| 564 | 2009-02-27 | BUGFIX: bad permanent storage location was defined for checked files in ZIP processor. |
2011511.cif 2011511.hkl |
| 563 | 2009-02-25 | Minor changes: information about file acception/rejection moved to end of message and in case of rejection added explaination (whereas it was because of suspicious extension, or possibility to write). |
2011511.cif 2011511.hkl |
| 561 | 2009-02-25 | Merged file upload logging into trunk from the uploads_logging branch: svn merge -r 545:HEAD ../branches/uploads_logging/ . |
2011511.cif 2011511.hkl |
| 550 | 2009-02-20 | Changed errors handling - PHP core implementation from now on will be used to write errors to file if DEBUG is turned off. Otherwise errors will be displayed on page. Also, turned on all errors reporting which will allow to do extensive debugging of system (more information will be collected). |
2011511.cif 2011511.hkl |
| 543 | 2009-02-20 | Adding favicon.ico - one more bug-fix and less errors in log. | 2011511.cif 2011511.hkl |
| 542 | 2009-02-20 | Adding simple robots.txt, as it is requested by indexing robots. | 2011511.cif 2011511.hkl |
| 540 | 2009-02-20 | Merging script "check_cookies.php", which returns to referer information, whereas user accepts cookies. | 2011511.cif 2011511.hkl |
| 539 | 2009-02-19 | Links changed due to session handling mechanism. | 2011511.cif 2011511.hkl |
| 538 | 2009-02-18 | BUGFIX: in process_* validation output was erased on each request. | 2011511.cif 2011511.hkl |
| 537 | 2009-02-18 | Changed view of anchors in "action" part of validate view. | 2011511.cif 2011511.hkl |
| 536 | 2009-02-18 | BUGFIX: misplaced session identifier in anchor. | 2011511.cif 2011511.hkl |
| 535 | 2009-02-18 | Extensive output if unknown file uploaded. | 2011511.cif 2011511.hkl |
| 534 | 2009-02-18 | Removed old debugging function (print_d) from validate.php Also changed validation rules - these need not only be triggered after file change, but if there is no validation output as well. |
2011511.cif 2011511.hkl |
| 533 | 2009-02-18 | BUGFIX: variable name changed. | 2011511.cif 2011511.hkl |
| 532 | 2009-02-18 | Removing old behaviour - URLs are rewritten by PHP, appending session identifier by default. Changed bootstrap.php to declare the lack of necessity for this replacement and changed template files (tpl/*) accordingly. |
2011511.cif 2011511.hkl |
| 531 | 2009-02-18 | Improved unique file name selector - add microseconds by default. | 2011511.cif 2011511.hkl |
| 529 | 2009-02-18 | Modified some scripts according to latest processing rules. Now it is possible to edit multiple files, upload archive and perform editing, depositing et. al. for each file. New flag (deposited) set on file status and accordingly changed CSS file. |
2011511.cif 2011511.hkl |
| 527 | 2009-02-15 | Fixed typos in the petition/index.html, pointed out by Peter and Daniel, and changed wording regarding the petition in the main COD index.php page. |
2011511.cif 2011511.hkl |
| 516 | 2008-12-30 | ADOdb cache is now stored in tmp/ directory. | 2011511.cif 2011511.hkl |
| 515 | 2008-12-30 | Changed ADODB_COUNTRECS variable to TRUE in bootstrap.php. MySQL DOES return row_count, so why not take use of count value. Modified celpar.php3 to avoid 'DROP TABLE `students`;' :) Arguments parsing and unified way for accessing all the parameters. Also, it is now possible to submit parameters via http-get. |
2011511.cif 2011511.hkl |
| 514 | 2008-12-29 | Disabled petition signing the cgi-bin/petition.pl script. |
2011511.cif 2011511.hkl |
| 513 | 2008-12-29 | Updated the COD Petition page, notifying the visitors that collection of signatures is over. |
2011511.cif 2011511.hkl |
| 512 | 2008-12-29 | Updating the petition/registerlogn.txt and petition/registerlogy.txt lists, after cleaning the obvious spam. |
2011511.cif 2011511.hkl |
| 511 | 2008-12-29 | Fixing celpar.php3 so that it does not produce 'Direct access denied!' error: -include('./config.php'); +include('./bootstrap.php'); The bug was apparently introduced during the latest security-increasing fixes... S.G. |
2011511.cif 2011511.hkl |
| 510 | 2008-12-17 | Script validate.php was completely rewritten so, that it would be possible to work with multiple files at once, not with single as it was before. Template was changed accordingly. No information is gathered from super global _SESSION variable (look at docs/sglobal_SESSION). Some new CSS selectors for new layout. TODO: implement new elements handling method in editing scripts. |
2011511.cif 2011511.hkl |
| 509 | 2008-12-16 | Corrected some mistyped variable names. Changed file_put_contents parameters, removing PHP v.6 only compatible. | 2011511.cif 2011511.hkl |
| 508 | 2008-12-16 | Session identifier was missed in new file selection. | 2011511.cif 2011511.hkl |
| 507 | 2008-12-16 | Changed code causing PHP warning. | 2011511.cif 2011511.hkl |
| 506 | 2008-12-16 | Small bugfixes. | 2011511.cif 2011511.hkl |
| 505 | 2008-12-16 | Adding new constant 'LINE_SEPARATOR'. TODO: add it's constructor according to system: - CR on Mac; - LF on any(?) Unix flavour; - CRLF on Windows; - etc. |
2011511.cif 2011511.hkl |
| 504 | 2008-12-16 | Setting 'ignore' on ALL files in tmp/ folder recursively. |
2011511.cif 2011511.hkl |
| 497 | 2008-11-25 | BUGFIX: used not-initialized value. | 2011511.cif 2011511.hkl |
| 484 | 2008-11-21 | Session files path was not specified. | 2011511.cif 2011511.hkl |
| 483 | 2008-11-21 | BUGFIX revision. Bug was noticed in 'cod.ensicaen.fr' mirror of COD: errors were emited in plain text in the middle of the site without any information how to fix them. Changes (these are related in this revision): - added function in bootstrap.php to check if required directories are writable. It has a list of directories required and checks using PHP native 'is_writable' function. - core methods that write result to files checks return value of above-mentioned function (it is stored in constant PATHS_ARE_WRITABLE) before attempting to write. If it is impossible to write these function silently fail. - index.php has a footer, where it is said (especially for site administrator), that PHP was unable to write to directories required. This SHOULD be taken into account, because some parts of COD relies and will rely even more on proper rights to write files. - added function 'dbCacheOperation' in 'cif-functions.php' and made this file automatically included in 'bootstrap.php'. This function will be used to perform any ADOdb cache operation. TODO: - review all parts were SESSION is used. User must be informed, that some operations might fail (if possible - session must not be used). - review all parts were files are written (file uploader, validator, etc.) and make appropriate changes informing user, that on particular mirror it is impossible to use them. - check whereas server administrator e-mail stored in environment values is correct and if yes - inform him about file permission change operations required (switch should be made available, as far as some administrators might NOT want to enable writing to server). |
2011511.cif 2011511.hkl |
| 475 | 2008-11-12 | Adding new variable (validationOutput) to $_SESSION array. Added ZIP error handling. ZIP files are added to session, and put into apropriate directories on server. |
2011511.cif 2011511.hkl |
| 473 | 2008-11-11 | Added new functions (cif-functions): * validFilePath - extends validFileName allowing directory separators; * genUniqueSessFileName - extends genPseudoUID, using different file extensions; * getSaveNameArchive - extends getSaveName for archives (creates directory at bottom level of uploads tree instead of file). After upload (upload.php) file extension in temporary folder is .tmp, so that it would be the same for CIF, ZIP and other files. Function genUniqueSessFileName is used. CIF post-upload processor (process_cif.php) renames uploaded file to have ".cif" file extension. Started creation of process_zip.php which will be used to process uploaded ZIP archives. Now it only unpacks ZIP uploaded, but Session is not extended. |
2011511.cif 2011511.hkl |
| 472 | 2008-11-11 | Reusing existing functionality. | 2011511.cif 2011511.hkl |
| 467 | 2008-10-21 | Non-existing $_SERVER array was requested. | 2011511.cif 2011511.hkl |
| 466 | 2008-10-21 | Starting multiple-file upload and deposit within single session process. Different post-upload processors will be created: - for CIF files already created; - will be created for archive files (ZIP, TGZ, TBZ, etc.). These uploaders, so far, redirect to validation script. Later, it will validate all files uploaded and will allow user to select, which file to edit at one moment, or another. |
2011511.cif 2011511.hkl |
| 465 | 2008-10-21 | Deleting the uploads/www-checked/ directory, and setting svn:ignore property on the uploads/www-uploads/ directory to ignore all uploaded files. |
2011511.cif 2011511.hkl |
| 464 | 2008-10-16 | Changing hard-coded file size limit to one defined in bootstrap.php | 2011511.cif 2011511.hkl |
| 463 | 2008-10-15 | Changed layout - better usability for CIF file selection before validation. | 2011511.cif 2011511.hkl |
| 462 | 2008-10-15 | Adding ignore property on sessions tree recursively, to ignore dynamically generated session files. |
2011511.cif 2011511.hkl |
| 461 | 2008-10-15 | Modified sessions handler. We will stay with one level directory structure, and see if it is enough for production server. Otherwise, we will jump to several levels, but so far as SVN is considered, we should try to have not so deep tree structure as it could become a problem when mirroring. |
2011511.cif 2011511.hkl |
| 460 | 2008-10-14 | Minor changes: * defined BASE_URL - an URL to site entry point, which should be used to make all URIs within site absolute. * defined timezone of site. It could be set per-site, so far it is made only to avoid PHP warnings generation. Major change: session storage is moved to project space. Here: /var/www/cod/tmp/session_data This folder itself is ignored, as far as it is three level, 6 bytes namespace - this makes SVN go boom. :) You should recreate folder structure using script mod_files.sh - it is intended to be part of every PHP installation, as written in PHP manual. |
2011511.cif 2011511.hkl |
| 459 | 2008-10-14 | Adding sessions storage to tmp folder. It will be ignored. | 2011511.cif 2011511.hkl |
| 451 | 2008-10-01 | Message was not comprehensible enough. | 2011511.cif 2011511.hkl |
| 449 | 2008-09-30 | Selection prompt added, so that user would understand, what to do in validation selector window (here: select new file for checking). |
2011511.cif 2011511.hkl |
| 448 | 2008-09-30 | BUGFIX: line returned from parser was missing valuable information. Here - data block name was being trimmed one symbol of left. |
2011511.cif 2011511.hkl |
| 447 | 2008-09-30 | Changing session start parameters, to use trans-SID (Session ID). PHP will now automatically append CODSESSION with coresponding SID to any matching element (defined in PHP configuration value url_rewriter.tags). |
2011511.cif 2011511.hkl |
| 444 | 2008-09-30 | 1. lib/SOptions.pm Copy of Perl module SOptions.pm added from svn+ssh://pitonas.ibt.lt/home/xray/svn-repositories/cif-tools/trunk/lib/perl5 -r533 It is used in lib/cif_cod_check to parse passed options. 2. tpl/validate_select.php Added missing template for validate_select. NOTE: Some fields might still be missing. |
2011511.cif 2011511.hkl |
| 443 | 2008-09-30 | Adding the new COD petition registrations. |
2011511.cif 2011511.hkl |
| 442 | 2008-09-30 | Adding the newly generated COD access statistics files. |
2011511.cif 2011511.hkl |
| 441 | 2008-09-23 | Regenerating COD access statistics. |
2011511.cif 2011511.hkl |
| 440 | 2008-09-23 | Adding new petition signatures. |
2011511.cif 2011511.hkl |
| 439 | 2008-09-16 | Modifying search engine so, that it would accept parameters passed via HTTP_GET. Adding required keys array, so that it would be possible to pass only several of them via HTTP_GET, not causing PHP warning of undefined variable. |
2011511.cif 2011511.hkl |
| 435 | 2008-09-06 | Adding the recent 'Yes' supporting signatores of the COD petition. (There were no 'No' signatures diring this period, the file registerlogn.txt was unchanged). |
2011511.cif 2011511.hkl |
| 434 | 2008-09-06 | Adding 'the' article into the output text of the 'result.php' script. |
2011511.cif 2011511.hkl |
| 432 | 2008-08-14 | Updated lib/cif_cod_check with copy from svn://pitonas.ibt.lt/home/xray/svn-repositories/cif-tools/trunk/perl-scripts -r626 ** Updated lib/CIFParser.pm with copy from svn://pitonas.ibt.lt/home/xray/svn-repositories/cif-tools/trunk/CIFParser -r622 |
2011511.cif 2011511.hkl |
| 429 | 2008-07-18 | Splitting 'validate.php' to different files. ---- As a consequence - updated 'bootstrap.php'; added new values to global configuration, as these will be used among majority of scripts. ---- CIF upload and validation functions moved to 'cif-functions.php' file. |
2011511.cif 2011511.hkl |
| 428 | 2008-07-17 | Using relative redirectos to the petition text in the root index.php file. |
2011511.cif 2011511.hkl |
| 427 | 2008-07-17 | Removing unused variable from the cgi-bin/petition.pl source. |
2011511.cif 2011511.hkl |
| 426 | 2008-07-17 | Changing conditions for the "no" answer e-mail in cgi-bin/petition.pl. |
2011511.cif 2011511.hkl |
| 425 | 2008-07-17 | Adding different e-mail reply message for the "NO" signature. |
2011511.cif 2011511.hkl |
| 424 | 2008-07-17 | BUG FIX: correcting the registration log filenam for the cgi-bin/petitionn.pl script. |
2011511.cif 2011511.hkl |
| 423 | 2008-07-17 | Adding symlinks cgi-bin/petitionn.pl and cgi-bin/petitiony.pl to serve yes.html and no.html forms. |
2011511.cif 2011511.hkl |
| 422 | 2008-07-17 | Deleting files 'petitionn.pl' and 'petitiony.pl' from the cod/cgi-bin/ directory; they will be replaced by symlinks to the 'petition.pl' script. |
2011511.cif 2011511.hkl |
| 421 | 2008-07-17 | Attempting to tighten security of the cgi-bin/petition.pl script: adding '-T' option to catch unchecked values from user's input. The script continues to work without further modifications. |
2011511.cif 2011511.hkl |
| 420 | 2008-07-17 | Fixing the cgi-bin/petition.pl script: a) cleaning DOS newlines and leading/trailing whitespace from the 'comment' field. b) reusing the $emailadmin variable to form the 'From:' field; thus SPOT principle is no longer violated. |
2011511.cif 2011511.hkl |
| 419 | 2008-07-17 | Changin the cgi-bin/petition.pl script: a) it now automatically selects the signature file name based on its own name, thys it is ready to become just a symlink to one single script file. b) It now cleans [\t\n\r] characters from the "Comment" field, so that the lines in the signature registration file do not get folded or split. c) it now uses IBT smtp server and thus is able to send mail. |
2011511.cif 2011511.hkl |
| 418 | 2008-07-17 | Changing the 'cgi-bin/petitiony.pl' to match the Vilnius CGI environment. Copying 'cgi-bin/petitiony.pl' onto 'cgi-bin/petition.pl for testing, changing the destination file name, and fixing the "Home" link URL. The script seems to work; the resulting 'registerlog.txt' file is written into the cod/cgi-bin directory. |
2011511.cif 2011511.hkl |
| 417 | 2008-07-17 | Taking yes.html as a source for the index0.html, for testing. In the index0.html, changing the CGI script name and the petition text compared to yes.html. |
2011511.cif 2011511.hkl |
| 416 | 2008-07-17 | In the cod/petition/ directory, redirecting the CGI script calls from http://sdpd.univ-lemans.fr/cgi-bin/petition.pl to http://cod.ibt.lt/cod/cgi-bin/petition.pl. |
2011511.cif 2011511.hkl |
| 415 | 2008-07-17 | Adding the cod/cgi-bin directory, a test CGI script to see if the script sin this directory work on the server, and Armel's original petition-registering scripts, which are however not yet adaped to the server environment. |
2011511.cif 2011511.hkl |
| 414 | 2008-07-17 | Setting up the svn:ignore property on tmp/ to ignore the temporary .zip* files. |
2011511.cif 2011511.hkl |
| 413 | 2008-07-15 | Creating directory structure for CIF uploads. Primary this is meant for new uploader, which will be implemented as a part of ./validate.php script. |
2011511.cif 2011511.hkl |
| 412 | 2008-07-15 | BUGFIX: previous commit contained error - extra quotes where added to single/double quoted strings which forced to display errors. As we are writing to file - this escaping is not necessary. |
2011511.cif 2011511.hkl |
| 411 | 2008-07-15 | Created EDIT function in CIF validator. Moved most of templating into templates (tpl/) folder - from now on it will be used to store PHP files used as templates. |
2011511.cif 2011511.hkl |
| 410 | 2008-07-14 | Search for structures NOT containing specified elements now also uses regular expression, that previously was made for CONTAINING elements only. An option to download list of COD numbers, matching request, as a text file, was added. |
2011511.cif 2011511.hkl |
| 409 | 2008-07-03 | Added extended logging and corrected some related errors. |
2011511.cif 2011511.hkl |
| 408 | 2008-07-03 | New version of cif_cod_check from svn+ssh://pitonas.ibt.lt/home/xray/svn-repositories/cif-tools -r538 which prints processed data block name next to file name. ==== Changed validate.php to take use of cif_cod_check. TODO: change messages printer. |
2011511.cif 2011511.hkl |
| 407 | 2008-07-03 | Adding error handler, which redirects errors to file. | 2011511.cif 2011511.hkl |
| 406 | 2008-07-03 | Creating basic templates. | 2011511.cif 2011511.hkl |
| 405 | 2008-07-03 | Adding new copy of CIFParser perl module. Quadratic algorythm resolved. Copy from external repository: svn+ssh://pitonas.ibt.lt/home/xray/svn-repositories/cif-tools -r521 |
2011511.cif 2011511.hkl |
| 402 | 2008-06-24 | Adding one more rewrite rule into the COD's .htaccess file to permit shorter CIF request URL's, like http://www.crystallography.net/2000000.cif |
2011511.cif 2011511.hkl |
| 401 | 2008-06-24 | Adding .htaccess into the COD Web site root that redirector CIF request URL's a-la 'http://www.crystallography.net/cif/2000000.cif' into the relevant CIF subdirectory. |
2011511.cif 2011511.hkl |
| 395 | 2008-06-12 | Adding links into the COD main page pointing to both 'http-analyze' and 'visitors' generated statistics pages. |
2011511.cif 2011511.hkl |
| 394 | 2008-06-12 | Adding a (W3C clean :) index.html page into the visitors/ directory. |
2011511.cif 2011511.hkl |
| 393 | 2008-06-12 | Adding statistics pages generated by the FLOSS 'visitors' program. The commands were: for i in logs/cod-200{3,4,5,6,7,8}; \ do ( \ B=`basename $i`; \ set -x; \ eval visitors -A -o html $i.* > $B.html \ ) done visitors -A -o html logs/cod-200?.* > cod-all.html |
2011511.cif 2011511.hkl |
| 392 | 2008-06-12 | Splitting the Armel's file cod-2003-4.txt into the year 2003 and year 2004 parts. |
2011511.cif 2011511.hkl |
| 391 | 2008-06-12 | Regenerating the COD access logs using the following commands and input files: http-analyze logs/cod-2007.{txt,log} http-analyze logs/cod-2008.{txt,log} The statistics charts now look reasonable, except for one feature: all past years' charts start with the 0 downloaded file value in december of the previous year. Obviously, they did not have this value; why then the http-analyze did put it on the chart? And what more bugs do we have in the statistics? In particular, it is not clear to me if the values after several recalculations get correctly merged. |
2011511.cif 2011511.hkl |
| 390 | 2008-06-12 | Splitting the cod-2007-8.log in two parts: the 2007 part and the 2008 part. The commands were: awk '$4~/\/2007:/' cod-2007-8.log > cod-2007.log awk '$4~/\/2008:/' cod-2007-8.log > cod-2008.log |
2011511.cif 2011511.hkl |
| 389 | 2008-06-12 | Copying the cod-2008.log file into cod-2007-8.log, so that the cod-2008.log can be cleaned and only the 2008 data left in it. |
2011511.cif 2011511.hkl |
| 388 | 2008-06-12 | Regenerating statistics with the 'http-analyze logs/cod-200[78].{txt,log}' command, in a hope that all values will get correctly merged. |
2011511.cif 2011511.hkl |
| 387 | 2008-06-12 | Adding the 2008 and the new 2008 files from the 'http-analyze logs/cod-2008.log' run. |
2011511.cif 2011511.hkl |
| 386 | 2008-06-12 | Running 'http-analyze logs/cod-2008.log'; the statistics, however, seems to be NOT merged, and the values from Armel's files got lost... |
2011511.cif 2011511.hkl |
| 385 | 2008-06-12 | Generated access statistics for the first quoter of the yer 2008 from the files received from Armel. |
2011511.cif 2011511.hkl |
| 384 | 2008-06-12 | Generated access statistics for the year 2007, using the http-analyze tool. |
2011511.cif 2011511.hkl |
| 383 | 2008-06-12 | Adding the http-analyze generated statistics for 2006. |
2011511.cif 2011511.hkl |
| 382 | 2008-06-12 | Adding Apache logs of COD, bot sent to me by Armel and collected from our cod.ibt.lt Apache server. |
2011511.cif 2011511.hkl |
| 377 | 2008-06-09 | Modified validation script, to parse cif_cod_check messages. Set svn:ignore property on tmp/ directory, which is used to store CIF files during validation. |
2011511.cif 2011511.hkl |
| 376 | 2008-06-08 | Corrected errors in validation script. It now allows to upload new CIF file and runs cif_cod_check against it. Output is displayed as list of errors. |
2011511.cif 2011511.hkl |
| 369 | 2008-06-03 | Adding validation script, that allows to upload and validate file provided. TODO: implement validation; so far execution of validation script is not working. |
2011511.cif 2011511.hkl |
| 368 | 2008-06-03 | Adding lib/ for non-PHP scripts, esp. included from other repositories. Initial files are imported from r498 of repository: svn+ssh://pitonas.ibt.lt/home/xray/svn-repositories/cif-tools |
2011511.cif 2011511.hkl |
| 366 | 2008-06-03 | Correcting HTML output errors and adding list of elements being searched into list. | 2011511.cif 2011511.hkl |
| 365 | 2008-06-03 | Changed regular expression to match old formulas format, as well as new. | 2011511.cif 2011511.hkl |
| 335 | 2008-04-03 | Bogus syntax in config.php example file. |
2011511.cif 2011511.hkl |
| 334 | 2008-04-03 | Merge track: svn merge -r328:HEAD svn://cod.ibt.lt/cod/branches/html_cif_check Merging in separation, of COD www initialization, and configuration. |
2011511.cif 2011511.hkl |
| 332 | 2008-04-03 | Changing ZIP downloader, to correctly handle file system errors: if it is unable to create ZIP archive, it responds to user request with message, instead of sending pseudo-zip file, with text/plain message on it, reporting FS error. |
2011511.cif 2011511.hkl |
| 331 | 2008-04-03 | Fixing back-links to the main COD page in COD subpages -- changing the link from "index.html" into "index.php". |
2011511.cif 2011511.hkl |
| 313 | 2008-03-27 | When session is not working - were is no use in trying to search for values. |
2011511.cif 2011511.hkl |
| 312 | 2008-03-27 | Changed search results page way of output. Changed queries for elements search. |
2011511.cif 2011511.hkl |
| 311 | 2008-03-27 | Implemented elements search using MySQL Regular Expressions. It allows to find 'N' when searching for 'N', and not 'Mn', or 'Na'. It also allows to search for elements with particular no. of appearances. |
2011511.cif 2011511.hkl |
| 310 | 2008-03-27 | PREV. Mistake in previous revision. |
2011511.cif 2011511.hkl |
| 309 | 2008-03-27 | Suspending possible errors on ZIP content echo. |
2011511.cif 2011511.hkl |
| 308 | 2008-03-27 | Changing message, recommending to refine search. Only number of entries displayed is emitted to user. |
2011511.cif 2011511.hkl |
| 307 | 2008-03-27 | Changed config.php.example accordingly to other changes. It now uses ADOdb DB abstraction layer. Also - sessions are initiated in it, as it is the very first file executed. |
2011511.cif 2011511.hkl |
| 300 | 2008-03-23 | Fixed the reference to the COD-to-IUCr.html in the COD new.html file. |
2011511.cif 2011511.hkl |
| 299 | 2008-03-23 | Fixing a GRINSP reference in the COD new.html file. |
2011511.cif 2011511.hkl |
| 298 | 2008-03-23 | Fixing a link to the historic Advisory-Board.txt file, now found under (hopefully persistent) URL archives/2003/doc/Advisory-Board.txt |
2011511.cif 2011511.hkl |
| 241 | 2008-03-06 | Added ob_end_clean() to zip.php so that no other output would corrupt our scripts intended output. |
2011511.cif 2011511.hkl |
| 240 | 2008-03-06 | Adding posibility to download all files as a single ZIP archive. |
2011511.cif 2011511.hkl |
| 239 | 2008-03-06 | Changing position of config.php include - it is moved before any output so, that headers sent from it won't break page up. |
2011511.cif 2011511.hkl |
| 238 | 2008-03-06 | Changing results file extension from PHP3, to PHP. PHP3 file extension is no longer normally supported by web servers as default extension is PHP, or PHPS. According to this updated search.html so, that it's action would be 'result.php', not 'result.php3'. In result.php using ADOdb DB abstraction layer. Adding check for big result sets - count results and display only first 300 entries. TODO: think of pagination, or add function for user to download all files matching criteria as an archive. |
2011511.cif 2011511.hkl |
| 237 | 2008-03-06 | Making entry/entries plural in database entries count information line. |
2011511.cif 2011511.hkl |
| 236 | 2008-03-06 | Changing index.html to index.php. Included ADOdb DB abstraction layer to cache data for half a day. Here it is used to cache count of entries in database. Directory 'coca' is used for database results cache. |
2011511.cif 2011511.hkl |
| 235 | 2008-03-06 | Changed headers of html files so, that these would work correctly with UTF8 database encoding (pass arguments). |
2011511.cif 2011511.hkl |
| 203 | 2008-03-02 | Fixed a link to http://www-crismat.ensicaen.fr/ in the donators/index.html page. |
2011511.cif 2011511.hkl |
| 202 | 2008-03-02 | Setting up the svn:ignore property in the cod/html/ to ignore the config.php file. |
2011511.cif 2011511.hkl |
| 195 | 2008-03-01 | Adding the latest list of petition signers, downloaded to day from the http://sdpd.univ-lemans.fr/cod/registerlogy.txt. |
2011511.cif 2011511.hkl |
| 194 | 2008-03-01 | Adding directory with the COD petition and the list of signatories. |
2011511.cif 2011511.hkl |
| 193 | 2008-03-01 | Adding latest news downloaded from the http://sdpd.univ-lemans.fr/cod/new.html. |
2011511.cif 2011511.hkl |
| 174 | 2008-02-24 | Updating number of entries in the COD index.html file. |
2011511.cif 2011511.hkl |
| 171 | 2008-02-24 | BUG FIX: the celpar.php3 now forms correct links to the COD CIF files. |
2011511.cif 2011511.hkl |
| 167 | 2008-02-24 | Adding the IUCr paper back-link display also for COD entries that were found using the cell parameter search form (processed by celpar.php3). |
2011511.cif 2011511.hkl |
| 166 | 2008-02-24 | Fixing spelling mistake ('Resuls' -> 'Results') in celpar.php3. |
2011511.cif 2011511.hkl |
| 165 | 2008-02-24 | Adding headers specifying UTF-8 encoding and setting MySQL UTF-8 query encoding into two COD php scripts (result.php3 and celpar.php3). |
2011511.cif 2011511.hkl |
| 159 | 2008-02-24 | Adding a 'cif' link into the html/ directory. This link points to the cif/ directory one level up. Thus, the html/ subdirectory can be used as an exact COD site replica (i.e. can be served directly from the Apache server), provided the cif/ directory is checked out one level higher. |
2011511.cif 2011511.hkl |
| 158 | 2008-02-24 | Collecting all COD site html and related files into the html/ subdirectory. |
2011511.cif 2011511.hkl |
| 19 | 2008-01-26 | Changing all end-of-line codes from DOS style to UNIX style in all COD CIF files, for more convenient processing: In the cod/cif/ directory: ff \*.cif | xargs perl -i -pe 's/\r\n/\n/' |
2011511.cif |
| 14 | 2008-01-13 | Appending a header with SVN keywords, COD URL and copying policy to all COD CIF files. |
2011511.cif |
| 13 | 2008-01-13 | Setting the svn:keywords property to "Author Date Revision URL Id" for all CIF files in the cod/cif directory. |
2011511.cif |
| 1 | 2007-11-30 | Adding all .cif files from the COD, downloaded in a Cod.zip file on 2007.02.07 (and the same Cod.zip is downloadable today, on 2007.11.29) |
2011511.cif |
All data in the COD and the database itself are dedicated to the
public domain and licensed under the
CC0
License
.
Users of the data should acknowledge the original authors of the
structural data.