#------------------------------------------------------------------------------ #$Date: 2016-02-19 22:18:51 +0000 (Fri, 19 Feb 2016) $ #$Revision: 176760 $ #$URL: svn://www.crystallography.net/cod/cif/2/01/20/2012032.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2012032 loop_ _publ_author_name 'Low, John N.' 'Arranz, Paloma' 'Cobo, Justo' 'Fontecha, M. Angeles' 'Godino, M. Luz' 'L\'opez, Rafael' 'Cannon, Debbie' 'Quesada, Antonio' 'Glidewell, Christopher' _publ_section_title ;Bis[N-(6-amino-3,4-dihydro-3-methyl-5-nitroso-4-oxopyrimidin-2-yl)glycylglycinato]triaquacalcium: coordination polymer chains linked by hydrogen bonds ; _journal_issue 6 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 680 _journal_page_last 682 _journal_paper_doi 10.1107/S0108270101004267 _journal_volume 57 _journal_year 2001 _chemical_formula_iupac '[Ca (C9 H11 N6 O5)2 (H2 O1)3]' _chemical_formula_moiety 'C18 H28 Ca N12 O13' _chemical_formula_sum 'C18 H28 Ca N12 O13' _chemical_formula_weight 660.60 _chemical_name_systematic ; Triaqua-bis[N-(6-amino-3,4-dihydro-3-methyl-5-nitroso-4-oxopyrimidin-2- yl)glycylglycinato]calcium ; _space_group_IT_number 15 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-C 2yc' _symmetry_space_group_name_H-M 'C 1 2/c 1' _cell_angle_alpha 90 _cell_angle_beta 96.418(5) _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 12.7815(7) _cell_length_b 7.7010(7) _cell_length_c 26.271(2) _cell_measurement_reflns_used 2553 _cell_measurement_temperature 150(2) _cell_measurement_theta_max 26.3 _cell_measurement_theta_min 1.6 _cell_volume 2569.7(3) _computing_cell_refinement 'DENZO-SMN (Otwinowski & Minor, 1997)' _computing_data_collection 'KappaCCD Server Software (Nonius, 1997)' _computing_data_reduction DENZO-SMN _computing_molecular_graphics 'PLATON (Spek, 2001)' _computing_publication_material 'SHELXL97 (Sheldrick, 1997) PRPKAPPA (Ferguson, 1999)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 150(2) _diffrn_measured_fraction_theta_full .98 _diffrn_measured_fraction_theta_max .98 _diffrn_measurement_device_type KappaCCD _diffrn_measurement_method '\f scans, and \w scans with \k offsets' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed X-ray tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength .71073 _diffrn_reflns_av_R_equivalents .090 _diffrn_reflns_av_sigmaI/netI .073 _diffrn_reflns_limit_h_max 15 _diffrn_reflns_limit_h_min -15 _diffrn_reflns_limit_k_max 9 _diffrn_reflns_limit_k_min -9 _diffrn_reflns_limit_l_max 32 _diffrn_reflns_limit_l_min -32 _diffrn_reflns_number 17345 _diffrn_reflns_theta_full 26.3 _diffrn_reflns_theta_max 26.3 _diffrn_reflns_theta_min 1.6 _diffrn_standards_decay_% negligible _exptl_absorpt_coefficient_mu .338 _exptl_absorpt_correction_T_max .997 _exptl_absorpt_correction_T_min .951 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details ')SORTAV; Blessing, 1995, 1997)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.708 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 1376 _exptl_crystal_size_max .15 _exptl_crystal_size_mid .075 _exptl_crystal_size_min .01 _refine_diff_density_max .32 _refine_diff_density_min -.36 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.00 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 214 _refine_ls_number_reflns 2553 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.00 _refine_ls_R_factor_all .096 _refine_ls_R_factor_gt .049 _refine_ls_shift/su_max <0.001 _refine_ls_shift/su_mean .000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.0683P)^2^+1.8308P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref .135 _reflns_number_gt 1641 _reflns_number_total 2553 _reflns_threshold_expression I>2\s(I) _cod_data_source_file gg1048.cif _cod_data_source_block II _cod_depositor_comments ; The following automatic conversions were performed: '_exptl_absorpt_correction_type' value 'Multi-scan' changed to 'multi-scan' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 2569.7(4) _cod_original_sg_symbol_H-M 'C 2/c' _cod_database_code 2012032 _cod_database_fobs_code 2012032 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y, -z+1/2' 'x+1/2, y+1/2, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y, z-1/2' '-x+1/2, -y+1/2, -z' 'x+1/2, -y+1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol Ca1 .5000 .26170(14) .2500 .0340(3) Uani d S 1 . . Ca N1 .71309(17) .0713(3) .04356(9) .0232(6) Uani d . 1 . . N C2 .80029(19) .0093(4) .07061(11) .0211(6) Uani d . 1 . . C N21 .81256(17) .0356(3) .12074(9) .0235(6) Uani d . 1 . . N H21 .8675 -.0102 .1391 .028 Uiso calc R 1 . . H O21 .57497(16) .1272(3) .18061(9) .0366(6) Uani d . 1 . . O C21 .7382(2) .1377(4) .14670(11) .0247(7) Uani d . 1 . . C H21A .7176 .2406 .1253 .030 Uiso calc R 1 . . H H21B .7752 .1804 .1794 .030 Uiso calc R 1 . . H N22 .62534(18) -.1190(3) .14391(9) .0250(6) Uani d . 1 . . N H22A .6735 -.1674 .1271 .030 Uiso calc R 1 . . H C22 .6389(2) .0455(4) .15817(11) .0235(7) Uani d . 1 . . C C23 .5362(2) -.2237(4) .15430(12) .0280(7) Uani d . 1 . . C H23A .5035 -.2745 .1217 .034 Uiso calc R 1 . . H H23B .4832 -.1477 .1678 .034 Uiso calc R 1 . . H C24 .5645(2) -.3702(4) .19252(11) .0239(7) Uani d . 1 . . C O22 .64762(16) -.3587(3) .22229(9) .0432(6) Uani d . 1 . . O O23 .49875(14) -.4923(3) .19159(7) .0271(5) Uani d . 1 . . O N3 .87758(16) -.0826(3) .04927(9) .0207(5) Uani d . 1 . . N C3 .9703(2) -.1513(4) .08167(11) .0282(7) Uani d . 1 . . C H3A 1.0202 -.0568 .0908 .042 Uiso calc R 1 . . H H3B 1.0043 -.2409 .0628 .042 Uiso calc R 1 . . H H3C .9478 -.2019 .1129 .042 Uiso calc R 1 . . H C4 .8704(2) -.1138(4) -.00318(11) .0225(7) Uani d . 1 . . C O4 .94132(14) -.1910(3) -.02184(8) .0281(5) Uani d . 1 . . O C5 .7752(2) -.0524(4) -.03337(11) .0210(6) Uani d . 1 . . C N5 .76720(18) -.0941(3) -.08314(9) .0274(6) Uani d . 1 . . N O5 .68578(15) -.0401(3) -.11212(8) .0350(6) Uani d . 1 . . O C6 .6993(2) .0414(4) -.00688(11) .0222(6) Uani d . 1 . . C N6 .61208(17) .0987(3) -.03334(10) .0300(6) Uani d . 1 . . N H6A .5649 .1548 -.0177 .036 Uiso calc R 1 . . H H6B .6012 .0807 -.0666 .036 Uiso calc R 1 . . H O1 .3833(3) -.0182(6) .22220(19) .0398(11) Uani d PD .50 . . O H1AW .3638 -.1157 .2375 .048 Uiso d PD .50 . . H H1BW .3286 .0123 .2006 .048 Uiso d PD .50 . . H O2 .6553(3) .1986(6) .29770(16) .0276(10) Uani d PD .50 . . O H2AW .7164 .1892 .2864 .033 Uiso d PD .50 . . H H2BW .6535 .1404 .3252 .033 Uiso d PD .50 . . H O3 .3257(3) .3417(6) .22504(19) .0392(12) Uani d PD .50 . . O H3AW .3247 .4461 .2395 .047 Uiso d PD .50 . . H H3BW .2620 .2978 .2262 .047 Uiso d PD .50 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Ca1 .0218(5) .0597(7) .0204(5) .000 .0022(3) .000 N1 .0210(12) .0223(14) .0265(14) .0006(10) .0037(10) -.0018(11) C2 .0208(14) .0181(16) .0244(17) -.0019(11) .0034(11) .0021(13) N21 .0234(12) .0216(14) .0255(14) .0006(10) .0023(10) .0024(11) O21 .0330(12) .0258(13) .0532(15) .0019(10) .0148(10) -.0049(11) C21 .0299(16) .0206(17) .0241(16) -.0027(12) .0054(12) -.0004(13) N22 .0269(13) .0185(15) .0304(15) -.0013(10) .0068(10) .0004(11) C22 .0254(15) .0223(18) .0223(16) .0034(12) .0006(12) .0034(13) C23 .0228(15) .0246(18) .0359(18) -.0032(12) .0002(12) .0023(14) C24 .0247(16) .0283(18) .0196(16) -.0002(13) .0063(12) -.0026(13) O22 .0295(12) .0566(17) .0406(14) -.0149(11) -.0089(10) .0194(12) O23 .0316(11) .0249(12) .0246(12) -.0058(9) .0028(8) .0007(9) N3 .0190(12) .0206(14) .0221(13) .0017(9) .0009(9) .0010(10) C3 .0283(16) .0289(18) .0258(17) .0086(13) -.0038(12) -.0006(14) C4 .0219(15) .0191(16) .0266(17) -.0019(12) .0034(12) .0009(13) O4 .0257(11) .0316(13) .0275(12) .0082(9) .0049(8) -.0006(10) C5 .0211(14) .0174(16) .0244(17) -.0006(11) .0023(11) -.0021(13) N5 .0286(13) .0243(15) .0284(15) .0000(10) -.0006(11) .0021(12) O5 .0367(12) .0357(14) .0296(13) .0035(10) -.0092(9) -.0003(10) C6 .0216(14) .0173(16) .0275(17) -.0014(11) .0015(11) .0015(13) N6 .0251(13) .0320(16) .0317(15) .0088(11) -.0016(11) -.0011(12) O1 .042(3) .036(3) .039(3) -.006(2) -.003(2) .000(2) O2 .019(2) .038(3) .026(2) .0005(18) .0038(16) .013(2) O3 .030(2) .037(3) .049(3) -.005(2) -.002(2) .000(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0033 .0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' K K .2009 .2494 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N .0061 .0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0106 .0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag O21 Ca1 O21 . 2_655 128.61(11) y O23 Ca1 O23 1_565 2_665 77.97(10) y O21 Ca1 O23 . 1_565 80.29(7) y O21 Ca1 O23 . 2_665 147.44(7) y O1 Ca1 O2 . . 113.79(16) y O1 Ca1 O3 . . 69.53(15) y O2 Ca1 O3 . . 163.04(16) y O21 Ca1 O1 . . 72.63(12) y O21 Ca1 O2 . . 85.89(12) y O21 Ca1 O3 . . 110.60(13) y O23 Ca1 O1 1_565 . 119.34(11) y O23 Ca1 O2 1_565 . 117.14(12) y O23 Ca1 O3 1_565 . 71.28(13) y O2 Ca1 O21 2_655 . 83.50(11) ? O3 Ca1 O21 2_655 . 82.93(13) ? O2 Ca1 O21 . 2_655 83.50(11) ? O3 Ca1 O21 . 2_655 82.93(13) ? O2 Ca1 O23 2_655 1_565 82.83(12) ? O3 Ca1 O23 2_655 1_565 84.87(13) ? O21 Ca1 O23 2_655 1_565 147.44(7) ? O2 Ca1 O23 . 2_665 82.83(12) ? O3 Ca1 O23 . 2_665 84.87(13) ? O21 Ca1 O1 2_655 . 66.43(12) ? O23 Ca1 O1 2_665 . 139.65(11) ? O21 Ca1 O1 . 2_655 66.43(12) ? O23 Ca1 O1 1_565 2_655 139.65(11) ? C6 N1 C2 . . 118.3(2) ? N21 C2 N1 . . 118.1(2) ? N21 C2 N3 . . 118.1(2) ? N1 C2 N3 . . 123.8(3) ? C2 N21 C21 . . 122.4(2) ? C2 N21 H21 . . 118.8 ? C21 N21 H21 . . 118.8 ? C22 O21 Ca1 . . 158.5(2) ? N21 C21 C22 . . 116.4(2) ? N21 C21 H21A . . 108.2 ? C22 C21 H21A . . 108.2 ? N21 C21 H21B . . 108.2 ? C22 C21 H21B . . 108.2 ? H21A C21 H21B . . 107.3 ? C22 N22 C23 . . 124.0(2) ? C22 N22 H22A . . 118.0 ? C23 N22 H22A . . 118.0 ? O21 C22 N22 . . 123.3(3) ? O21 C22 C21 . . 118.1(3) ? N22 C22 C21 . . 118.5(3) ? N22 C23 C24 . . 113.7(2) ? N22 C23 H23A . . 108.8 ? C24 C23 H23A . . 108.8 ? N22 C23 H23B . . 108.8 ? C24 C23 H23B . . 108.8 ? H23A C23 H23B . . 107.7 ? O22 C24 O23 . . 125.7(3) ? O22 C24 C23 . . 118.8(3) ? O23 C24 C23 . . 115.5(2) ? C24 O23 Ca1 . 1_545 127.65(17) ? C2 N3 C4 . . 121.2(2) ? C2 N3 C3 . . 120.8(2) ? C4 N3 C3 . . 117.9(2) ? N3 C3 H3A . . 109.5 ? N3 C3 H3B . . 109.5 ? H3A C3 H3B . . 109.5 ? N3 C3 H3C . . 109.5 ? H3A C3 H3C . . 109.5 ? H3B C3 H3C . . 109.5 ? O4 C4 N3 . . 120.5(2) ? O4 C4 C5 . . 123.2(3) ? N3 C4 C5 . . 116.3(2) ? N5 C5 C6 . . 127.3(2) ? N5 C5 C4 . . 115.0(2) ? C6 C5 C4 . . 117.7(2) ? O5 N5 C5 . . 117.9(2) ? N6 C6 N1 . . 118.3(3) ? N6 C6 C5 . . 119.0(3) ? N1 C6 C5 . . 122.7(2) ? C6 N6 H6A . . 120.0 ? C6 N6 H6B . . 120.0 ? H6A N6 H6B . . 120.0 ? Ca1 O1 H1AW . . 136 ? Ca1 O1 H1BW . . 110 ? H1AW O1 H1BW . . 106 ? Ca1 O2 H2AW . . 126 ? Ca1 O2 H2BW . . 118 ? H2AW O2 H2BW . . 111 ? Ca1 O3 H3AW . . 100 ? Ca1 O3 H3BW . . 138 ? H3AW O3 H3BW . . 106 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Ca1 O1 . 2.676(4) y Ca1 O2 . 2.278(4) y Ca1 O3 . 2.334(4) y Ca1 O21 . 2.388(2) y Ca1 O23 1_565 2.437(2) y Ca1 O1 2_655 2.676(4) ? Ca1 O2 2_655 2.278(4) ? Ca1 O3 2_655 2.334(4) ? Ca1 O21 2_655 2.388(2) ? Ca1 O23 2_665 2.437(2) ? N1 C2 . 1.341(3) y C2 N3 . 1.384(3) y N3 C4 . 1.392(4) y C4 C5 . 1.455(4) y C5 C6 . 1.449(4) y C6 N1 . 1.337(4) y C2 N21 . 1.324(4) y N3 C3 . 1.477(3) y C4 O4 . 1.231(3) y C5 N5 . 1.339(4) y N5 O5 . 1.288(3) y C6 N6 . 1.322(3) y N21 C21 . 1.460(4) y C21 C22 . 1.513(4) y C22 O21 . 1.232(3) y C22 N22 . 1.327(4) y N22 C23 . 1.447(4) y C23 C24 . 1.526(4) y C24 O22 . 1.250(3) y C24 O23 . 1.260(3) y N21 H21 . .88 ? C21 H21A . .99 ? C21 H21B . .99 ? N22 H22A . .88 ? C23 H23A . .99 ? C23 H23B . .99 ? C3 H3A . .98 ? C3 H3B . .98 ? C3 H3C . .98 ? N6 H6A . .88 ? N6 H6B . .88 ? O1 H1AW . .90 ? O1 H1BW . .88 ? O2 H2AW . .87 ? O2 H2BW . .85 ? O3 H3AW . .89 ? O3 H3BW . .89 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag O1 H1AW O22 2_655 .90 2.16 3.048(5) 168 y O1 H1BW O5 5_655 .88 2.32 2.962(5) 130 y O2 H2AW O22 4_655 .87 1.82 2.667(4) 166 y O2 H2BW O5 6_556 .85 1.82 2.655(5) 164 y O3 H3AW O22 2_665 .89 1.82 2.692(5) 166 y O3 H3BW O22 3_455 .89 1.89 2.744(5) 162 y N6 H6B O5 . .88 1.94 2.598(3) 131 y N6 H6A O4 3_455 .88 1.97 2.761(3) 149 y N21 H21 O23 3_555 .88 2.05 2.861(3) 152 y N22 H22A N5 7_645 .88 2.34 3.132(3) 150 y loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_4 _geom_torsion _geom_torsion_publ_flag C6 N1 C2 N21 . . -178.5(2) ? C6 N1 C2 N3 . . .6(4) ? N1 C2 N21 C21 . . -3.8(4) ? O2 Ca1 O21 C22 2_655 . -150.5(6) ? O2 Ca1 O21 C22 . . 7.2(6) ? O3 Ca1 O21 C22 2_655 . 39.7(6) ? O3 Ca1 O21 C22 . . -168.7(5) ? O21 Ca1 O21 C22 2_655 . -71.1(5) ? O23 Ca1 O21 C22 1_565 . 125.7(5) ? O23 Ca1 O21 C22 2_665 . 77.0(6) ? O1 Ca1 O21 C22 . . -109.3(6) ? O1 Ca1 O21 C22 2_655 . -31.0(5) ? Ca1 O21 C22 N22 . . 102.7(5) ? Ca1 O21 C22 C21 . . -76.9(6) ? C23 N22 C22 O21 . . -2.1(4) ? N21 C21 C22 O21 . . 179.1(2) ? N3 C2 N21 C21 . . 177.1(2) y C2 N21 C21 C22 . . 80.8(3) y N21 C21 C22 N22 . . -.5(4) y C21 C22 N22 C23 . . 177.5(3) y C22 N22 C23 C24 . . -111.7(3) y N22 C23 C24 O22 . . 21.3(4) y N22 C23 C24 O23 . . -160.1(2) y O22 C24 O23 Ca1 . 1_545 4.9(4) ? C23 C24 O23 Ca1 . 1_545 -173.51(18) ? N21 C2 N3 C4 . . -179.4(2) ? N1 C2 N3 C4 . . 1.5(4) ? N21 C2 N3 C3 . . .8(4) ? N1 C2 N3 C3 . . -178.3(3) ? C2 N3 C4 O4 . . 177.7(3) ? C3 N3 C4 O4 . . -2.5(4) ? C2 N3 C4 C5 . . -3.1(4) ? C3 N3 C4 C5 . . 176.7(2) ? O4 C4 C5 N5 . . 3.4(4) ? N3 C4 C5 N5 . . -175.8(2) ? O4 C4 C5 C6 . . -178.1(3) ? N3 C4 C5 C6 . . 2.7(4) ? C6 C5 N5 O5 . . 3.2(4) ? C4 C5 N5 O5 . . -178.5(2) ? C2 N1 C6 N6 . . 178.3(2) ? C2 N1 C6 C5 . . -.9(4) ? N5 C5 C6 N6 . . -1.7(4) ? C4 C5 C6 N6 . . 180.0(3) ? N5 C5 C6 N1 . . 177.5(3) ? C4 C5 C6 N1 . . -.8(4) ?