#------------------------------------------------------------------------------ #$Date: 2013-12-28 13:58:47 +0000 (Sat, 28 Dec 2013) $ #$Revision: 91933 $ #$URL: svn://www.crystallography.net/cod/cif/2/01/21/2012128.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2012128 loop_ _publ_author_name 'Yufit, Dmitrii S.' 'Howard, Judith A.K.' 'Kozhushkov, Sergei I.' 'Kostikov, Rafael R.' 'de Meijere, Armin' _publ_section_title ; trans-1,2,3-Tris(1-hydroxycyclopropyl)cyclopropane ; _journal_issue 8 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 968 _journal_page_last 969 _journal_volume 57 _journal_year 2001 _chemical_formula_moiety 'C12 H18 O3' _chemical_formula_sum 'C12 H18 O3' _chemical_formula_weight 210.26 _chemical_melting_point 129.5(5) _chemical_name_systematic ; trans-1,2,3-tris-(1'-hydroxycyclopropyl)cyclopropane ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _cell_angle_alpha 90.00 _cell_angle_beta 96.5780(10) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 12.6464(3) _cell_length_b 8.4615(2) _cell_length_c 10.4323(2) _cell_measurement_reflns_used 511 _cell_measurement_temperature 120.0(2) _cell_measurement_theta_max 29.1 _cell_measurement_theta_min 2.5 _cell_volume 1108.99(4) _computing_cell_refinement 'SAINT (Bruker, 1997)' _computing_data_collection 'SMART (Bruker, 1997)' _computing_data_reduction 'SHELXTL (Bruker, 1997)' _computing_molecular_graphics SHELXTL _computing_publication_material SHELXTL _computing_structure_refinement SHELXTL _computing_structure_solution SHELXTL _diffrn_ambient_temperature 120.0(2) _diffrn_detector_area_resol_mean 8 _diffrn_measured_fraction_theta_full .921 _diffrn_measured_fraction_theta_max .921 _diffrn_measurement_device_type 'Bruker SMART CCD 1K' _diffrn_measurement_method \w-scan _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength .71073 _diffrn_reflns_av_R_equivalents .0329 _diffrn_reflns_av_sigmaI/netI .0280 _diffrn_reflns_limit_h_max 16 _diffrn_reflns_limit_h_min -17 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min -11 _diffrn_reflns_limit_l_max 14 _diffrn_reflns_limit_l_min -14 _diffrn_reflns_number 10828 _diffrn_reflns_theta_full 30.34 _diffrn_reflns_theta_max 30.34 _diffrn_reflns_theta_min 1.62 _diffrn_standards_decay_% 0 _exptl_absorpt_coefficient_mu .089 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.259 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 456 _exptl_crystal_size_max .62 _exptl_crystal_size_mid .14 _exptl_crystal_size_min .14 _refine_diff_density_max .324 _refine_diff_density_min -.226 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.102 _refine_ls_hydrogen_treatment refall _refine_ls_matrix_type full _refine_ls_number_parameters 208 _refine_ls_number_reflns 3064 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.102 _refine_ls_R_factor_all .0553 _refine_ls_R_factor_gt .0419 _refine_ls_shift/su_max .001 _refine_ls_shift/su_mean .000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0396P)^2^+0.4841P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref .1034 _reflns_number_gt 2555 _reflns_number_total 3064 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file gd1150.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'P 21/c' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_chemical_melting_point' value '129-130' was changed to '129.5(5)' - the average value was taken and precision was estimated. Automatic conversion script Id: cif_fix_values 1646 2011-03-28 12:23:43Z adriana The following automatic conversions were performed: '_chemical_melting_point' value '129-130' was changed to '129.5(5)' - the average value was taken and precision was estimated. '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2012128 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol O1 .84923(7) .45925(10) .06654(9) .01897(19) Uani d . 1 . . O O2 .70894(8) .31988(10) .21164(8) .0206(2) Uani d . 1 . . O O3 .75775(7) 1.02880(10) .31831(9) .01879(19) Uani d . 1 . . O C1 .76243(9) .67846(13) .16650(11) .0135(2) Uani d . 1 . . C C2 .68786(9) .59524(13) .24978(11) .0141(2) Uani d . 1 . . C C3 .74427(9) .74430(13) .29710(11) .0139(2) Uani d . 1 . . C C4 .86449(9) .60215(13) .13911(11) .0149(2) Uani d . 1 . . C C5 .96650(10) .61334(16) .22856(13) .0208(3) Uani d . 1 . . C C6 .95383(10) .70138(15) .10029(12) .0191(2) Uani d . 1 . . C C7 .71554(9) .43754(13) .30985(11) .0153(2) Uani d . 1 . . C C8 .79725(11) .41681(15) .42510(13) .0224(3) Uani d . 1 . . C C9 .67936(11) .39635(15) .43774(12) .0214(3) Uani d . 1 . . C C10 .68713(9) .89786(13) .30778(11) .0148(2) Uani d . 1 . . C C11 .58054(10) .93183(15) .23469(13) .0212(3) Uani d . 1 . . C C12 .59075(10) .90901(15) .38025(13) .0216(3) Uani d . 1 . . C H1O .8107(16) .403(2) .1049(19) .041(5) Uiso d . 1 . . H H2O .7258(14) .231(2) .2480(18) .037(5) Uiso d . 1 . . H H3O .7909(17) 1.028(2) .398(2) .050(6) Uiso d . 1 . . H H1 .7263(11) .7376(17) .0932(14) .014(3) Uiso d . 1 . . H H2 .6123(12) .6036(17) .2184(14) .017(4) Uiso d . 1 . . H H3 .8033(12) .7290(18) .3652(14) .019(4) Uiso d . 1 . . H H51 .9672(12) .6761(19) .3075(16) .025(4) Uiso d . 1 . . H H52 1.0128(14) .519(2) .2335(17) .030(4) Uiso d . 1 . . H H61 .9916(12) .6614(18) .0339(15) .021(4) Uiso d . 1 . . H H62 .9447(12) .8155(19) .1030(15) .021(4) Uiso d . 1 . . H H81 .8405(13) .322(2) .4267(15) .027(4) Uiso d . 1 . . H H82 .8334(14) .509(2) .4654(16) .029(4) Uiso d . 1 . . H H91 .6547(12) .288(2) .4510(15) .024(4) Uiso d . 1 . . H H92 .6434(13) .478(2) .4803(16) .029(4) Uiso d . 1 . . H H111 .5435(13) .848(2) .1792(16) .027(4) Uiso d . 1 . . H H112 .5685(13) 1.0399(19) .2041(16) .024(4) Uiso d . 1 . . H H121 .5853(13) 1.003(2) .4353(16) .029(4) Uiso d . 1 . . H H122 .5631(13) .809(2) .4128(16) .031(4) Uiso d . 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 .0249(4) .0132(4) .0200(4) .0005(3) .0076(3) -.0031(3) O2 .0334(5) .0102(4) .0185(4) -.0005(3) .0048(4) -.0013(3) O3 .0247(5) .0112(4) .0210(4) -.0015(3) .0047(4) .0007(3) C1 .0160(5) .0120(5) .0127(5) .0014(4) .0027(4) .0009(4) C2 .0149(5) .0114(5) .0162(5) .0001(4) .0025(4) .0003(4) C3 .0157(5) .0109(5) .0155(5) .0010(4) .0034(4) -.0003(4) C4 .0177(5) .0123(5) .0150(5) .0017(4) .0036(4) -.0007(4) C5 .0183(6) .0238(6) .0203(6) .0040(5) .0019(4) -.0001(5) C6 .0182(6) .0184(6) .0216(6) -.0003(4) .0060(4) .0001(5) C7 .0192(5) .0112(5) .0161(5) .0000(4) .0040(4) -.0004(4) C8 .0260(6) .0156(5) .0242(6) .0011(5) -.0035(5) .0038(5) C9 .0296(7) .0170(5) .0186(6) .0010(5) .0074(5) .0028(5) C10 .0173(5) .0116(5) .0161(5) .0016(4) .0046(4) .0002(4) C11 .0192(6) .0201(6) .0244(6) .0066(5) .0031(5) .0031(5) C12 .0223(6) .0209(6) .0233(6) .0045(5) .0101(5) .0012(5) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag O1 C4 . 1.4280(10) yes O2 C7 . 1.4240(10) yes O3 C10 . 1.4190(10) yes C1 C4 . 1.500(2) yes C1 C3 . 1.514(2) yes C1 C2 . 1.526(2) yes C2 C7 . 1.499(2) yes C2 C3 . 1.504(2) yes C3 C10 . 1.497(2) yes C4 C6 . 1.500(2) yes C4 C5 . 1.506(2) yes C5 C6 . 1.524(2) yes C7 C9 . 1.500(2) yes C7 C8 . 1.503(2) yes C8 C9 . 1.522(2) yes C10 C11 . 1.499(2) yes C10 C12 . 1.509(2) yes C11 C12 . 1.522(2) yes O1 H1O . .82(2) ? O2 H2O . .86(2) ? O3 H3O . .89(2) ? C1 H1 . .980(10) ? C2 H2 . .98(2) ? C3 H3 . .98(2) ? C5 H51 . .98(2) ? C5 H52 . .99(2) ? C6 H61 . .95(2) ? C6 H62 . .97(2) ? C8 H81 . .97(2) ? C8 H82 . .98(2) ? C9 H91 . .98(2) ? C9 H92 . .96(2) ? C11 H111 . 1.00(2) ? C11 H112 . .98(2) ? C12 H121 . .99(2) ? C12 H122 . .99(2) ? loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0033 .0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0106 .0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C4 C1 C3 123.50(10) C4 C1 C2 120.76(9) C3 C1 C2 59.33(7) C7 C2 C3 122.00(10) C7 C2 C1 121.30(10) C3 C2 C1 59.94(7) C10 C3 C2 122.50(10) C10 C3 C1 120.70(10) C2 C3 C1 60.73(7) O1 C4 C1 113.50(10) O1 C4 C6 113.02(9) C1 C4 C6 120.10(10) O1 C4 C5 115.80(10) C1 C4 C5 123.40(10) C6 C4 C5 60.92(8) C4 C5 C6 59.35(8) C4 C6 C5 59.74(8) O2 C7 C2 109.27(9) O2 C7 C9 118.60(10) C2 C7 C9 119.90(10) O2 C7 C8 118.20(10) C2 C7 C8 123.00(10) C9 C7 C8 60.87(9) C7 C8 C9 59.47(8) C7 C9 C8 59.66(8) O3 C10 C3 112.23(9) O3 C10 C11 114.30(10) C3 C10 C11 122.80(10) O3 C10 C12 116.70(10) C3 C10 C12 121.10(10) C11 C10 C12 60.78(8) C10 C11 C12 59.95(8) C10 C12 C11 59.27(8) C4 O1 H1O 107.0(10) C7 O2 H2O 108.0(10) C10 O3 H3O 107.0(10) C4 C1 H1 113.9(8) C3 C1 H1 114.1(8) C2 C1 H1 114.6(8) C7 C2 H2 112.2(9) C3 C2 H2 117.3(9) C1 C2 H2 114.9(9) C10 C3 H3 113.3(9) C2 C3 H3 114.9(9) C1 C3 H3 115.0(9) C4 C5 H51 118.7(9) C6 C5 H51 118.0(10) C4 C5 H52 116.0(10) C6 C5 H52 116.0(10) H51 C5 H52 117.0(10) C4 C6 H61 117.1(9) C5 C6 H61 117.1(9) C4 C6 H62 116.9(9) C5 C6 H62 117.4(9) H61 C6 H62 117.0(10) C7 C8 H81 116.0(10) C9 C8 H81 117.0(10) C7 C8 H82 120.0(10) C9 C8 H82 118.0(10) H81 C8 H82 115.0(10) C7 C9 H91 118.5(9) C8 C9 H91 116.7(9) C7 C9 H92 117.0(10) C8 C9 H92 119.0(10) H91 C9 H92 115.0(10) C10 C11 H111 119.7(9) C12 C11 H111 118.0(10) C10 C11 H112 116.0(10) C12 C11 H112 116.0(10) H111 C11 H112 115.0(10) C10 C12 H121 117.0(10) C11 C12 H121 118.0(10) C10 C12 H122 117.0(10) C11 C12 H122 117.0(10) H121 C12 H122 116.0(10) loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O1 H1O O2 . .82(2) 1.93(2) 2.7290(10) 166(2) O2 H2O O3 1_545 .86(2) 1.88(2) 2.7440(10) 176(2) O3 H3O O1 4_576 .89(2) 1.83(2) 2.7140(10) 174(2) C6 H61 O1 3_765 .948(16) 2.584(16) 3.475(2) 157.0(10) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C4 C1 C2 C7 1.8(2) C3 C1 C2 C7 -111.40(10) C4 C1 C2 C3 113.30(10) C7 C2 C3 C10 -140.10(10) C1 C2 C3 C10 109.70(10) C7 C2 C3 C1 110.20(10) C4 C1 C3 C10 138.80(10) C2 C1 C3 C10 -112.60(10) C4 C1 C3 C2 -108.70(10) C3 C1 C4 O1 135.30(10) C2 C1 C4 O1 63.80(10) C3 C1 C4 C6 -86.50(10) C2 C1 C4 C6 -158.10(10) C3 C1 C4 C5 -13.5(2) C2 C1 C4 C5 -84.90(10) O1 C4 C5 C6 103.20(10) C1 C4 C5 C6 -108.70(10) O1 C4 C6 C5 -107.80(10) C1 C4 C6 C5 113.90(10) C3 C2 C7 O2 -142.40(10) C1 C2 C7 O2 -70.50(10) C3 C2 C7 C9 75.8(2) C1 C2 C7 C9 147.70(10) C3 C2 C7 C8 3.1(2) C1 C2 C7 C8 74.9(2) O2 C7 C8 C9 -108.90(10) C2 C7 C8 C9 108.60(10) O2 C7 C9 C8 108.20(10) C2 C7 C9 C8 -113.50(10) C2 C3 C10 O3 -163.10(10) C1 C3 C10 O3 -90.30(10) C2 C3 C10 C11 -20.7(2) C1 C3 C10 C11 52.1(2) C2 C3 C10 C12 52.5(2) C1 C3 C10 C12 125.30(10) O3 C10 C11 C12 -108.20(10) C3 C10 C11 C12 110.00(10) O3 C10 C12 C11 104.20(10) C3 C10 C12 C11 -112.90(10) _journal_paper_doi 10.1107/S010827010100796X