#------------------------------------------------------------------------------ #$Date: 2012-02-03 17:16:24 +0000 (Fri, 03 Feb 2012) $ #$Revision: 32112 $ #$URL: svn://www.crystallography.net/cod/cif/2/01/21/2012184.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2012184 loop_ _publ_author_name 'Hu, Ning-Hai' 'Aoki, Katsuyuki' 'Adeyemo, Adegboye O.' 'Williams, George N.' _publ_section_title ; Host--guest-like thiamine--anion complexation in thiaminium bis(tetrafluoroborate) ; _journal_issue 9 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1064 _journal_page_last 1066 _journal_volume 57 _journal_year 2001 _chemical_formula_moiety 'C12 H18 N4 O S 2+, 2BF4 -' _chemical_formula_sum 'C12 H18 B2 F8 N4 O S' _chemical_formula_weight 439.98 _chemical_name_common (H-thiamine)bis(tetrafluoroborate) _chemical_name_systematic ; 3-[(4-amino-2-methyl-5-pyrimidinio)methyl]-5-(2-hydroxyethyl)- 4-methylthiazolium(2+) bis(tetrafluoroborate) ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _audit_creation_method SHELXTL _cell_angle_alpha 90.00 _cell_angle_beta 101.900(10) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 13.8490(10) _cell_length_b 7.5650(10) _cell_length_c 18.554(5) _cell_measurement_reflns_used 20 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 11.2 _cell_measurement_theta_min 6.5 _cell_volume 1902.1(6) _computing_cell_refinement XSCANS _computing_data_collection 'XSCANS (Siemens, 1994b)' _computing_data_reduction 'SHELXTL (Siemens, 1994a)' _computing_molecular_graphics SHELXTL _computing_publication_material SHELXTL _computing_structure_refinement SHELXTL _computing_structure_solution SHELXTL _diffrn_ambient_temperature 293(2) _diffrn_measurement_device 'Siemens P4 diffractometer' _diffrn_measurement_method '\w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength .71073 _diffrn_reflns_av_R_equivalents .0224 _diffrn_reflns_av_sigmaI/netI .0859 _diffrn_reflns_limit_h_max 16 _diffrn_reflns_limit_h_min -1 _diffrn_reflns_limit_k_max 8 _diffrn_reflns_limit_k_min -1 _diffrn_reflns_limit_l_max 21 _diffrn_reflns_limit_l_min -22 _diffrn_reflns_number 4564 _diffrn_reflns_theta_max 25.00 _diffrn_reflns_theta_min 1.68 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 100 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu .256 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.536 _exptl_crystal_density_method 'not measured' _exptl_crystal_description tabular _exptl_crystal_F_000 896 _exptl_crystal_size_max .45 _exptl_crystal_size_mid .40 _exptl_crystal_size_min .12 _refine_diff_density_max .242 _refine_diff_density_min -.189 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref .990 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 377 _refine_ls_number_reflns 3348 _refine_ls_number_restraints 41 _refine_ls_restrained_S_all 1.161 _refine_ls_R_factor_all .1332 _refine_ls_R_factor_gt .0552 _refine_ls_shift/su_max -.011 _refine_ls_shift/su_mean .001 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.0400P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref .1240 _reflns_number_gt 1501 _reflns_number_total 3348 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file da1186.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'P 21/n' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2012184 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 S1 .0512(7) .0543(8) .1232(12) .0060(7) .0170(7) .0063(9) C2 .040(3) .053(3) .092(4) -.002(2) .012(2) .006(3) N3 .036(2) .049(2) .054(2) -.001(2) .006(2) .006(2) C4 .040(2) .057(3) .055(3) -.008(2) .005(2) .001(2) C5 .042(2) .057(3) .067(3) .002(3) .011(2) .008(3) C41 .049(3) .068(4) .110(4) -.016(3) .011(3) .000(3) C51 .043(3) .080(4) .090(4) .010(3) .017(3) .018(4) C52 .047(3) .096(5) .085(4) .008(4) .012(3) -.002(4) O53 .062(2) .086(3) .079(2) .017(2) .025(2) .013(2) C35' .044(3) .049(3) .063(3) .001(2) .006(3) .000(3) N1' .051(2) .070(3) .058(3) .002(2) .015(2) -.002(2) C2' .039(2) .055(3) .069(3) .003(2) .009(2) .000(3) N3' .040(2) .064(3) .061(2) -.003(2) .006(2) -.003(2) C4' .048(3) .054(3) .052(3) .008(2) .010(2) .002(3) C5' .038(2) .048(3) .051(3) .002(2) .001(2) .005(2) C6' .047(3) .060(3) .051(3) -.002(3) .001(3) .000(3) C2'1 .055(3) .091(4) .098(4) -.010(3) .028(3) -.005(3) N4'1 .055(3) .085(3) .053(3) -.016(3) .006(2) -.009(3) B1 .063(4) .079(5) .073(5) .000(5) -.002(4) .002(5) F1 .309(18) .088(6) .072(5) .042(10) .031(8) .019(5) F2 .113(8) .230(17) .299(18) .055(9) -.046(10) -.033(14) F3 .144(9) .121(8) .069(5) -.060(8) .045(5) -.021(5) F4 .092(6) .195(15) .087(5) -.062(8) -.005(4) -.064(7) F1' .132(9) .085(8) .127(10) -.039(8) .068(7) .028(7) F2' .076(6) .088(6) .067(5) -.013(5) -.021(4) .021(5) F3' .087(8) .096(8) .44(3) .019(6) .017(11) .031(14) F4' .26(2) .071(7) .168(12) -.017(11) .026(12) -.017(7) B2 .068(5) .101(6) .067(5) .005(5) .024(4) .005(5) F5 .106(4) .186(8) .071(3) .037(5) .035(3) .015(4) F6 .147(5) .125(5) .115(4) -.036(4) .017(4) -.008(4) F7 .072(3) .202(8) .136(5) -.016(4) .052(3) -.007(6) F8 .225(9) .103(5) .105(4) .019(5) -.009(5) .016(4) F5' .094(11) .093(14) .129(13) .012(10) .028(10) -.008(10) F6' .19(3) .22(3) .103(14) .05(2) .075(17) -.021(17) F7' .21(2) .120(17) .33(4) -.036(18) .02(3) -.02(2) F8' .23(3) .27(4) .28(4) -.13(3) .19(3) -.11(3) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_group _atom_site_type_symbol S1 .86029(8) .9675(2) .09574(8) .0764(5) Uani d . 1 . S C2 .7621(3) 1.1002(6) .0884(3) .0620(14) Uani d . 1 . C H2 .694(3) 1.052(6) .090(2) .088(15) Uiso d . 1 . H N3 .7860(2) 1.2677(5) .0908(2) .0466(9) Uani d . 1 . N C4 .8874(3) 1.2973(6) .0976(2) .0514(12) Uani d . 1 . C C5 .9382(3) 1.1454(6) .1006(2) .0556(12) Uani d . 1 . C C41 .9253(3) 1.4818(6) .1022(3) .0764(15) Uani d . 1 . C H41A .9133 1.5381 .1478 .092 Uiso calc R 1 . H H41B .8907 1.5496 .0589 .092 Uiso calc R 1 . H H41C .9970 1.4807 .1031 .092 Uiso calc R 1 . H C51 1.0476(3) 1.1195(9) .1112(3) .071(2) Uani d . 1 . C H51A 1.076(3) 1.237(7) .108(2) .089(18) Uiso d . 1 . H H51B 1.061(3) 1.039(6) .072(2) .092(19) Uiso d . 1 . H C52 1.0920(4) 1.0447(10) .1868(3) .076(2) Uani d . 1 . C H52A 1.165(3) 1.033(6) .188(2) .085(15) Uiso d . 1 . H H52B 1.078(3) 1.124(6) .224(2) .081(17) Uiso d . 1 . H O53 1.0552(2) .8716(6) .1954(2) .0740(10) Uani d D 1 . O H53 1.089(4) .783(6) .176(3) .14(3) Uiso d D 1 . H C35' .7137(3) 1.4136(6) .0881(3) .0528(13) Uani d . 1 . C H35A .712(3) 1.478(6) .042(2) .081(16) Uiso d . 1 . H H35B .743(3) 1.495(5) .1262(19) .052(13) Uiso d . 1 . H N1' .4992(3) 1.3065(5) .1719(2) .0593(11) Uani d . 1 . N H1' .484(3) 1.307(6) .215(2) .070(16) Uiso d . 1 . H C2' .4354(3) 1.2319(6) .1155(3) .0545(12) Uani d . 1 . C N3' .4534(2) 1.2214(5) .0490(2) .0554(10) Uani d . 1 . N C4' .5417(3) 1.2823(6) .0380(2) .0512(11) Uani d . 1 . C C5' .6144(3) 1.3514(6) .0972(2) .0468(11) Uani d . 1 . C C6' .5886(3) 1.3609(6) .1624(3) .0539(12) Uani d . 1 . C H6' .627(3) 1.402(5) .204(2) .054(13) Uiso d . 1 . H C2'1 .3424(3) 1.1584(7) .1308(3) .080(2) Uani d . 1 . C H21A .3153 1.2406 .1631 .096 Uiso calc R 1 . H H21B .3559 1.0425 .1556 .096 Uiso calc R 1 . H H21C .2939 1.1431 .0839 .096 Uiso calc R 1 . H N4'1 .5546(3) 1.2715(6) -.0303(2) .0652(13) Uani d . 1 . N H41D .514(3) 1.229(6) -.062(2) .066(17) Uiso d . 1 . H H41E .610(3) 1.312(6) -.049(2) .079(15) Uiso d . 1 . H B1 .6254(5) .8429(10) .2014(4) .074(2) Uani d D 1 . B F1 .6361(15) .7025(14) .2470(5) .157(6) Uani d PD .538(12) . F F2 .5288(8) .886(2) .1902(10) .227(8) Uani d PD .538(12) . F F3 .6501(9) .7912(13) .1359(4) .108(5) Uani d PD .538(12) . F F4 .6834(8) .9605(19) .2405(6) .128(6) Uani d PD .538(12) . F F1' .5659(10) .7213(15) .2179(7) .109(4) Uani d PD .462(12) . F F2' .5802(7) .9266(11) .1393(4) .082(4) Uani d PD .462(12) . F F3' .7124(7) .7753(15) .1906(14) .213(10) Uani d PD .462(12) . F F4' .6395(15) .9955(19) .2462(9) .167(9) Uani d PD .462(12) . F B2 .7827(5) 1.3773(12) -.1096(4) .077(2) Uani d D 1 . B F5 .8093(5) 1.3984(12) -.1743(3) .119(3) Uani d PD .752(9) . F F6 .8223(5) 1.5208(8) -.0626(3) .130(3) Uani d PD .752(9) . F F7 .6836(3) 1.4009(11) -.1203(4) .132(3) Uani d PD .752(9) . F F8 .8041(8) 1.2226(9) -.0764(3) .150(3) Uani d PD .752(9) . F F5' .8725(11) 1.301(3) -.0782(9) .105(6) Uani d PD .248(9) . F F6' .7282(19) 1.448(4) -.0688(11) .165(12) Uani d PD .248(9) . F F7' .7292(19) 1.245(3) -.1631(15) .225(15) Uani d PD .248(9) . F F8' .807(2) 1.510(4) -.1594(15) .24(2) Uani d PD .248(9) . F loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag S1 C2 . 1.673(4) yes S1 C5 . 1.715(4) yes C2 N3 . 1.308(5) yes C2 H2 . 1.01(4) ? N3 C4 . 1.403(5) yes N3 C35' . 1.484(5) yes C4 C5 . 1.342(5) yes C4 C41 . 1.488(6) ? C5 C51 . 1.501(6) ? C41 H41A . .99 ? C41 H41B . .99 ? C41 H41C . .99 ? C51 C52 . 1.521(7) ? C51 H51A . .98(5) ? C51 H51B . .99(5) ? C52 O53 . 1.426(7) ? C52 H52A . 1.01(4) ? C52 H52B . .96(4) ? O53 H53 . .93(3) ? C35' C5' . 1.496(5) yes C35' H35A . .97(4) ? C35' H35B . .96(4) ? N1' C2' . 1.347(5) yes N1' C6' . 1.350(5) yes N1' H1' . .86(4) ? C2' N3' . 1.309(5) yes C2' C2'1 . 1.483(6) ? N3' C4' . 1.361(5) yes C4' N4'1 . 1.318(5) yes C4' C5' . 1.427(5) yes C5' C6' . 1.332(6) yes C6' H6' . .89(4) ? C2'1 H21A . .99 ? C2'1 H21B . .99 ? C2'1 H21C . .99 ? N4'1 H41D . .79(4) ? N4'1 H41E . .96(5) ? B1 F1' . 1.313(10) ? B1 F4 . 1.313(12) ? B1 F2' . 1.349(9) ? B1 F1 . 1.347(11) ? B1 F4' . 1.413(15) ? B1 F3 . 1.384(9) ? B1 F3' . 1.362(12) ? B1 F2 . 1.350(11) ? B2 F6' . 1.290(14) ? B2 F8 . 1.327(9) ? B2 F5 . 1.336(9) ? B2 F7 . 1.357(8) ? B2 F5' . 1.386(14) ? B2 F6 . 1.429(9) ? B2 F8' . 1.45(2) ? B2 F7' . 1.49(2) ? loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0033 .0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' B B .0013 .0007 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N .0061 .0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0106 .0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' F F .0171 .0103 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S .1246 .1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C2 S1 C5 91.5(2) yes N3 C2 S1 112.5(3) yes N3 C2 H2 125(3) ? S1 C2 H2 122(3) ? C2 N3 C4 113.5(4) yes C2 N3 C35' 123.8(3) yes C4 N3 C35' 122.7(4) yes C5 C4 N3 111.9(4) yes C5 C4 C41 128.8(4) ? N3 C4 C41 119.3(4) ? C4 C5 C51 128.6(5) ? C4 C5 S1 110.6(3) yes C51 C5 S1 120.8(4) ? C4 C41 H41A 109.5 ? C4 C41 H41B 109.5 ? H41A C41 H41B 109.5 ? C4 C41 H41C 109.5 ? H41A C41 H41C 109.5 ? H41B C41 H41C 109.5 ? C5 C51 C52 112.0(4) ? C5 C51 H51A 106(3) ? C52 C51 H51A 108(3) ? C5 C51 H51B 108(3) ? C52 C51 H51B 111(3) ? H51A C51 H51B 112(4) ? O53 C52 C51 111.0(5) ? O53 C52 H52A 107(3) ? C51 C52 H52A 105(2) ? O53 C52 H52B 112(3) ? C51 C52 H52B 109(3) ? H52A C52 H52B 113(4) ? C52 O53 H53 114(4) ? N3 C35' C5' 113.0(4) yes N3 C35' H35A 107(3) ? C5' C35' H35A 114(2) ? N3 C35' H35B 106(2) ? C5' C35' H35B 112(2) ? H35A C35' H35B 104(3) ? C2' N1' C6' 119.9(4) yes C2' N1' H1' 118(3) ? C6' N1' H1' 122(3) ? N3' C2' N1' 122.4(4) yes N3' C2' C2'1 119.9(4) ? N1' C2' C2'1 117.7(4) ? C2' N3' C4' 118.2(4) yes N4'1 C4' N3' 115.3(4) ? N4'1 C4' C5' 123.2(4) ? N3' C4' C5' 121.5(4) yes C6' C5' C4' 116.1(4) yes C6' C5' C35' 120.7(4) yes C4' C5' C35' 123.2(4) yes C5' C6' N1' 121.8(4) yes C5' C6' H6' 125(2) ? N1' C6' H6' 114(2) ? C2' C2'1 H21A 109.5 ? C2' C2'1 H21B 109.5 ? H21A C2'1 H21B 109.5 ? C2' C2'1 H21C 109.5 ? H21A C2'1 H21C 109.5 ? H21B C2'1 H21C 109.5 ? C4' N4'1 H41D 122(3) ? C4' N4'1 H41E 127(3) ? H41D N4'1 H41E 111(4) ? F1' B1 F2' 109.0(8) ? F4 B1 F1 102.2(10) ? F1' B1 F4' 116.9(10) ? F2' B1 F4' 95.9(10) ? F4 B1 F3 116.4(8) ? F1 B1 F3 108.3(8) ? F1' B1 F3' 112.9(9) ? F2' B1 F3' 108.7(11) ? F4' B1 F3' 112.0(10) ? F4 B1 F2 113.3(9) ? F1 B1 F2 105.2(11) ? F3 B1 F2 110.5(9) ? F8 B2 F5 116.5(7) ? F8 B2 F7 107.8(8) ? F5 B2 F7 108.1(6) ? F6' B2 F5' 120.6(13) ? F8 B2 F6 111.5(6) ? F5 B2 F6 108.4(7) ? F7 B2 F6 103.8(7) ? F6' B2 F8' 109.2(16) ? F5' B2 F8' 104.4(12) ? F6' B2 F7' 113.4(15) ? F5' B2 F7' 106.2(12) ? F8' B2 F7' 100.9(14) ? loop_ _geom_contact_atom_site_label_1 _geom_contact_atom_site_label_2 _geom_contact_distance _geom_contact_publ_flag S1 O53 3.029(3) ? N1' F2' 3.188(11) yes C2' F2' 3.031(11) yes N3' F2' 3.106(9) yes C4' F2' 3.263(8) ? C5' F2' 3.364(9) ? C6' F2' 3.312(10) ? N1' F4' 3.179(19) yes C6' F4' 3.178(17) yes N1' F2 3.217(17) yes C2' F2 3.117(17) yes C6' F4 3.495(16) ? C4 F6 3.377(7) yes C2 F8 3.359(9) ? N3 F8 3.183(7) yes C4 F8 3.247(7) yes C5 F8 3.472(8) ? C4 F5' 3.226(18) yes C5 F5' 3.460(18) ? N3 F6' 3.21(2) yes loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag C2 H2 F3 . 1.01(4) 2.29(4) 3.035(8) 130(3) yes C2 H2 F2' . 1.01(4) 2.20(4) 3.154(11) 156(3) yes N4'1 H41D F2' 3_675 .79(4) 2.09(5) 2.875(8) 169(4) yes N4'1 H41D F3 3_675 .79(4) 2.41(4) 3.132(12) 153(4) yes N4'1 H41E F7 . .96(5) 1.94(5) 2.859(7) 158(4) yes N4'1 H41E F6' . .96(5) 2.02(5) 2.96(3) 165(4) yes N1' H1' O53 2_655 .86(4) 1.92(4) 2.763(6) 166(4) yes O53 H53 F5 3_775 .93(3) 1.97(4) 2.855(8) 157(5) yes O53 H53 F5' 3_775 .93(3) 2.09(5) 2.886(16) 143(5) yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion S1 C5 C51 C52 -67.5(7) C5 C51 C52 O53 64.4(7) C2 N3 C35' C5' 11.4(7) N3 C35' C5' C4' -82.8(5)