#------------------------------------------------------------------------------ #$Date: 2013-08-29 16:37:19 +0100 (Thu, 29 Aug 2013) $ #$Revision: 88064 $ #$URL: svn://www.crystallography.net/cod/cif/2/01/22/2012256.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2012256 loop_ _publ_author_name 'Alfonso, Montserrat' 'Wang, Yi' 'Stoeckli-Evans, Helen' _publ_section_title ; Hydrogen bonding in the inner-salt zwitterion and in two different charged forms of 5,6-bis(2-pyridyl)pyrazine-2,3-dicarboxylic acid ; _journal_issue 10 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1184 _journal_page_last 1188 _journal_volume 57 _journal_year 2001 _chemical_formula_moiety 'C16 H11 N4 O4 + , Cl O4 - , 3H2 O' _chemical_formula_sum 'C16 H17 Cl N4 O11' _chemical_formula_weight 476.79 _chemical_name_systematic ;6-carboxy-5-carboxylatopyrazine-2,3-diyldi-2-pyridinium perchlorate trihydrate ; _space_group_IT_number 13 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yc' _symmetry_space_group_name_H-M 'P 1 2/c 1' _audit_creation_method SHELXL97 _cell_angle_alpha 90 _cell_angle_beta 106.934(8) _cell_angle_gamma 90 _cell_formula_units_Z 2 _cell_length_a 6.1401(7) _cell_length_b 15.6358(12) _cell_length_c 10.7154(8) _cell_measurement_reflns_used 5000 _cell_measurement_temperature 223(2) _cell_measurement_theta_max 26.05 _cell_measurement_theta_min 1.65 _cell_volume 984.13(16) _computing_cell_refinement 'CELL (Stoe & Cie, 2000)' _computing_data_collection 'EXPOSE (Stoe & Cie, 2000)' _computing_data_reduction 'X-RED in STADI4 (Stoe & Cie, 1997)' _computing_molecular_graphics 'PLATON99 (Spek, 1990)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1990)' _diffrn_ambient_temperature 223(2) _diffrn_detector_area_resol_mean 0.82\%A _diffrn_measured_fraction_theta_full .990 _diffrn_measured_fraction_theta_max .990 _diffrn_measurement_device_type 'Stoe IPDS' _diffrn_measurement_method '\f oscillation' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength .71073 _diffrn_reflns_av_R_equivalents .033 _diffrn_reflns_av_sigmaI/netI .028 _diffrn_reflns_limit_h_max 7 _diffrn_reflns_limit_h_min -7 _diffrn_reflns_limit_k_max 19 _diffrn_reflns_limit_k_min -19 _diffrn_reflns_limit_l_max 13 _diffrn_reflns_limit_l_min -13 _diffrn_reflns_number 7650 _diffrn_reflns_theta_full 25.94 _diffrn_reflns_theta_max 25.94 _diffrn_reflns_theta_min 2.38 _diffrn_standards_decay_% 0 _diffrn_standards_interval_time 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu .266 _exptl_absorpt_correction_type none _exptl_crystal_colour 'pale yellow' _exptl_crystal_density_diffrn 1.609 _exptl_crystal_density_meas none _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 492 _exptl_crystal_size_max .36 _exptl_crystal_size_mid .35 _exptl_crystal_size_min .26 _refine_diff_density_max .18 _refine_diff_density_min -.58 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.017 _refine_ls_hydrogen_treatment refall _refine_ls_matrix_type full _refine_ls_number_parameters 190 _refine_ls_number_reflns 1914 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.017 _refine_ls_R_factor_all .057 _refine_ls_R_factor_gt .040 _refine_ls_shift/su_max <0.001 _refine_ls_shift/su_mean .000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0786P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref .115 _reflns_number_gt 1419 _reflns_number_total 1914 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file gd1159.cif _[local]_cod_data_source_block IIIa _[local]_cod_cif_authors_sg_H-M 'P 2/c' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 984.13(15) _cod_database_code 2012256 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y, -z+1/2' '-x, -y, -z' 'x, -y, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol O1 .3233(3) -.03491(9) .10493(15) .0487(4) Uani d . 1 . . O O2 .1347(3) -.12771(9) .18880(15) .0464(4) Uani d . 1 . . O H2O .0000 -.130(3) .2500 .080(12) Uiso d S 1 . . H N1 .0965(3) .09766(9) .15109(14) .0297(4) Uani d . 1 . . N N2 .1821(3) .24553(10) .03765(14) .0321(4) Uani d . 1 . . N H2N .285(4) .2022(15) .051(2) .047(6) Uiso d . 1 . . H C1 .0643(3) .02366(11) .20518(16) .0298(4) Uani d . 1 . . C C2 .0346(3) .17086(11) .19261(16) .0276(4) Uani d . 1 . . C C3 .0324(3) .24614(11) .10802(16) .0291(4) Uani d . 1 . . C C4 -.1222(4) .31173(12) .09105(19) .0362(5) Uani d . 1 . . C H4 -.229(4) .3116(13) .1394(19) .035(5) Uiso d . 1 . . H C5 -.1203(4) .37640(13) .0023(2) .0447(5) Uani d . 1 . . C H5 -.224(5) .4201(16) -.010(2) .054(7) Uiso d . 1 . . H C6 .0372(4) .37459(14) -.0665(2) .0456(5) Uani d . 1 . . C H6 .045(4) .4182(16) -.125(2) .053(6) Uiso d . 1 . . H C7 .1876(4) .30819(13) -.04735(19) .0402(5) Uani d . 1 . . C H7 .299(4) .3010(14) -.096(2) .045(6) Uiso d . 1 . . H C8 .1833(4) -.05126(12) .16216(18) .0351(4) Uani d . 1 . . C Cl1 .5000 .44850(5) .2500 .0616(3) Uani d S 1 . . Cl O11 .5000 .35788(14) .2500 .0530(6) Uani d S 1 . . O O12 .5187(7) .4638(2) .4036(3) .0658(10) Uani d P .50 . . O O13 .2741(12) .4793(5) .2005(7) .100(3) Uani d P .50 . . O O14 .3338(13) .4887(5) .2673(6) .093(2) Uani d P .50 . . O O1W .5044(3) .12538(10) .06311(16) .0441(4) Uani d . 1 . . O H1A .552(5) .1116(17) .000(3) .072(9) Uiso d . 1 . . H H1B .442(5) .0793(18) .080(2) .054(7) Uiso d . 1 . . H O2W .5000 .25145(16) .7500 .0713(8) Uani d S 1 . . O H2WA .3585 .2104 .7136 .100 Uiso d . 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 .0584(10) .0409(8) .0574(10) .0081(7) .0338(9) -.0015(6) O2 .0539(9) .0312(8) .0586(9) .0040(6) .0236(8) -.0015(6) N1 .0274(8) .0322(8) .0301(8) .0009(6) .0094(6) -.0005(6) N2 .0342(9) .0329(8) .0317(8) -.0027(7) .0135(7) -.0034(6) C1 .0287(10) .0312(9) .0277(8) -.0013(7) .0056(7) -.0019(7) C2 .0235(9) .0299(9) .0297(9) .0004(7) .0085(7) -.0008(7) C3 .0300(10) .0310(9) .0271(8) -.0030(7) .0095(7) -.0022(7) C4 .0376(11) .0370(10) .0360(10) .0026(8) .0137(9) .0014(8) C5 .0534(14) .0365(11) .0431(11) .0085(10) .0125(10) .0067(9) C6 .0654(15) .0396(11) .0345(10) -.0026(10) .0187(10) .0069(9) C7 .0508(13) .0416(11) .0331(10) -.0093(9) .0198(9) -.0019(8) C8 .0385(11) .0342(10) .0325(9) .0043(8) .0103(8) -.0013(8) Cl1 .0433(5) .0381(4) .0898(7) .000 -.0020(4) .000 O11 .0560(14) .0413(12) .0661(14) .000 .0249(12) .000 O12 .086(3) .071(2) .0430(18) -.023(2) .0225(18) -.0166(16) O13 .069(3) .070(3) .122(5) .022(2) -.032(4) .013(4) O14 .115(6) .086(4) .104(5) .052(4) .073(4) .017(4) O1W .0407(9) .0466(9) .0517(9) .0004(7) .0236(7) -.0074(7) O2W .0666(18) .0549(15) .096(2) .000 .0298(15) .000 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag O1 C8 . 1.219(2) ? O2 C8 . 1.284(2) ? O2 H2O . 1.1965(19) ? N1 C2 . 1.323(2) ? N1 C1 . 1.334(2) ? N2 C7 . 1.345(2) ? N2 C3 . 1.348(2) ? N2 H2N . .91(2) ? C1 C1 2 1.410(4) ? C1 C8 . 1.522(3) ? C2 C2 2 1.413(3) ? C2 C3 . 1.483(2) ? C3 C4 . 1.373(3) ? C4 C5 . 1.391(3) ? C4 H4 . .95(2) ? C5 C6 . 1.376(3) ? C5 H5 . .92(3) ? C6 C7 . 1.365(3) ? C6 H6 . .94(2) ? C7 H7 . .98(2) ? Cl1 O14 . 1.258(6) ? Cl1 O14 2_655 1.258(6) ? Cl1 O11 . 1.417(2) ? Cl1 O13 2_655 1.418(6) ? Cl1 O13 . 1.418(6) ? Cl1 O12 . 1.634(3) ? Cl1 O12 2_655 1.634(3) ? O12 O14 . 1.615(8) ? O13 O14 . .718(7) ? O1W H1A . .84(3) ? O1W H1B . .86(3) ? O2W H2WA . 1.0590 ? loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0033 .0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N .0061 .0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0106 .0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl .1484 .1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle C8 O2 H2O . . 113(2) C2 N1 C1 . . 120.69(15) C7 N2 C3 . . 121.96(18) C7 N2 H2N . . 119.7(14) C3 N2 H2N . . 118.3(14) N1 C1 C1 . 2 118.63(10) N1 C1 C8 . . 113.01(16) C1 C1 C8 2 . 128.32(11) N1 C2 C2 . 2 118.77(10) N1 C2 C3 . . 115.67(15) C2 C2 C3 2 . 125.48(10) N2 C3 C4 . . 119.27(17) N2 C3 C2 . . 116.75(16) C4 C3 C2 . . 123.80(16) C3 C4 C5 . . 119.36(19) C3 C4 H4 . . 119.3(12) C5 C4 H4 . . 121.4(12) C6 C5 C4 . . 119.9(2) C6 C5 H5 . . 120.4(16) C4 C5 H5 . . 119.7(16) C7 C6 C5 . . 119.05(19) C7 C6 H6 . . 119.3(15) C5 C6 H6 . . 121.6(15) N2 C7 C6 . . 120.44(19) N2 C7 H7 . . 115.9(13) C6 C7 H7 . . 123.6(13) O1 C8 O2 . . 123.39(17) O1 C8 C1 . . 117.52(17) O2 C8 C1 . . 119.08(17) O14 Cl1 O14 . 2_655 120.0(8) O14 Cl1 O11 . . 120.0(4) O14 Cl1 O11 2_655 . 120.0(4) O14 Cl1 O13 . 2_655 121.5(4) O14 Cl1 O13 2_655 2_655 30.4(4) O11 Cl1 O13 . 2_655 109.9(3) O14 Cl1 O13 . . 30.4(4) O14 Cl1 O13 2_655 . 121.5(4) O11 Cl1 O13 . . 109.9(3) O13 Cl1 O13 2_655 . 140.3(6) O14 Cl1 O12 . . 66.4(3) O14 Cl1 O12 2_655 . 104.7(3) O11 Cl1 O12 . . 98.43(13) O13 Cl1 O12 2_655 . 78.5(4) O13 Cl1 O12 . . 95.8(4) O14 Cl1 O12 . 2_655 104.7(3) O14 Cl1 O12 2_655 2_655 66.4(3) O11 Cl1 O12 . 2_655 98.43(13) O13 Cl1 O12 2_655 2_655 95.8(4) O13 Cl1 O12 . 2_655 78.5(4) O12 Cl1 O12 . 2_655 163.1(3) O14 O12 Cl1 . . 45.6(2) O14 O13 Cl1 . . 62.4(8) O13 O14 Cl1 . . 87.2(9) O13 O14 O12 . . 150.7(12) Cl1 O14 O12 . . 68.0(4) H1A O1W H1B . . 104(3) loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O2 H2O O2 2 1.1965(19) 1.1965(19) 2.392(3) 177(4) N2 H2N O1W . .91(2) 1.78(3) 2.684(2) 172(2) O1W H1A O1 3_655 .84(3) 1.94(3) 2.734(2) 156(3) O1W H1B O1 . .86(3) 1.98(3) 2.830(2) 172(3) O2W H2WA O2 4_556 1.06 1.85 2.889(2) 167 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_4 _geom_torsion C2 N1 C1 C1 . 2 8.5(3) C2 N1 C1 C8 . . -169.67(16) C1 N1 C2 C2 . 2 9.4(3) C1 N1 C2 C3 . . -167.37(16) C7 N2 C3 C4 . . 1.2(3) C7 N2 C3 C2 . . 176.52(16) N1 C2 C3 N2 . . -29.8(2) C2 C2 C3 N2 2 . 153.7(2) N1 C2 C3 C4 . . 145.31(18) C2 C2 C3 C4 2 . -31.2(3) N2 C3 C4 C5 . . -.4(3) C2 C3 C4 C5 . . -175.34(18) C3 C4 C5 C6 . . -.7(3) C4 C5 C6 C7 . . .9(3) C3 N2 C7 C6 . . -1.0(3) C5 C6 C7 N2 . . -.1(3) N1 C1 C8 O1 . . 12.7(2) C1 C1 C8 O1 2 . -165.2(2) N1 C1 C8 O2 . . -168.12(16) C1 C1 C8 O2 2 . 14.0(3) O14 Cl1 O12 O14 2_655 . 116.7(8) O11 Cl1 O12 O14 . . -119.1(4) O13 Cl1 O12 O14 2_655 . 132.2(4) O13 Cl1 O12 O14 . . -8.0(7) O12 Cl1 O12 O14 2_655 . 60.9(4) O14 Cl1 O13 O14 2_655 . -96.5(14) O11 Cl1 O13 O14 . . 115.8(11) O13 Cl1 O13 O14 2_655 . -64.2(11) O12 Cl1 O13 O14 . . 14.6(12) O12 Cl1 O13 O14 2_655 . -149.3(12) Cl1 O13 O14 O12 . . -31(2) O14 Cl1 O14 O13 2_655 . 102.1(12) O11 Cl1 O14 O13 . . -77.9(12) O13 Cl1 O14 O13 2_655 . 137.5(11) O12 Cl1 O14 O13 . . -164.1(13) O12 Cl1 O14 O13 2_655 . 31.1(13) O14 Cl1 O14 O12 2_655 . -93.9(3) O11 Cl1 O14 O12 . . 86.1(3) O13 Cl1 O14 O12 2_655 . -58.4(5) O13 Cl1 O14 O12 . . 164.1(13) O12 Cl1 O14 O12 2_655 . -164.8(2) Cl1 O12 O14 O13 . . 34(3) _cod_database_fobs_code 2012256