#------------------------------------------------------------------------------ #$Date: 2011-09-10 04:16:28 +0100 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2012283.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2012283 loop_ _publ_author_name 'Vijayaraghavan, Rangachari' 'Kumar, Pravindra' 'Dey, Sharmistha' 'Singh, Tej P.' _publ_section_title ; Design of peptides with \a,\b-dehydro residues: a dipeptide with a branched \b-carbon dehydro residue at the (i+1) position, methyl N-(benzyloxycarbonyl)-\a,\b-didehydrovalyl-L-tryptophanate ; _journal_issue 10 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1220 _journal_page_last 1221 _journal_volume 57 _journal_year 2001 _chemical_formula_iupac 'C25 H27 N3 O5' _chemical_formula_moiety 'C25 H27 N3 O5' _chemical_formula_sum 'C25 H27 N3 O5' _chemical_formula_weight 449.50 _chemical_name_systematic ; Methyl N-(carbobenzoxy)-\a,\b-didehydrovalyl-L-tryptophanate ; _space_group_IT_number 5 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'A 2y' _symmetry_space_group_name_H-M 'A 1 2 1' _cell_angle_alpha 90.00 _cell_angle_beta 107.791(12) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 17.1524(9) _cell_length_b 6.1439(9) _cell_length_c 22.6183(11) _cell_measurement_reflns_used 25 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 25 _cell_measurement_theta_min 0 _cell_volume 2269.6(4) _computing_cell_refinement SDP _computing_data_collection 'SDP (Enraf-Nonius, 1979)' _computing_molecular_graphics 'PLATON (Spek, 2001)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full .993 _diffrn_measured_fraction_theta_max .993 _diffrn_measurement_device_type 'Enraf Nonius CAD-4' _diffrn_measurement_method \w-2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.54180 _diffrn_reflns_av_R_equivalents .0000 _diffrn_reflns_av_sigmaI/netI .0170 _diffrn_reflns_limit_h_max 21 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 7 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 26 _diffrn_reflns_limit_l_min -28 _diffrn_reflns_number 2576 _diffrn_reflns_theta_full 75.56 _diffrn_reflns_theta_max 75.56 _diffrn_reflns_theta_min 2.71 _diffrn_standards_decay_% 0 _diffrn_standards_interval_time 60 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu .759 _exptl_absorpt_correction_T_max .928 _exptl_absorpt_correction_T_min .835 _exptl_absorpt_correction_type empirical _exptl_absorpt_process_details '(SDP; Enraf-Nonius, 1979)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.315 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 952 _exptl_crystal_size_max .3 _exptl_crystal_size_mid .2 _exptl_crystal_size_min .1 _refine_diff_density_max .241 _refine_diff_density_min -.249 _refine_ls_extinction_coef .0018(4) _refine_ls_extinction_method SHELXL97 _refine_ls_goodness_of_fit_ref 1.040 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 302 _refine_ls_number_reflns 2576 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.040 _refine_ls_R_factor_all .0484 _refine_ls_R_factor_gt .0460 _refine_ls_shift/su_max <0.001 _refine_ls_shift/su_mean .000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.1137P)^2^+0.5403P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref .1455 _reflns_number_gt 2434 _reflns_number_total 2576 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file vj1138.cif _[local]_cod_data_source_block II _cod_database_code 2012283 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y, -z' 'x, y+1/2, z+1/2' '-x, y+1/2, -z+1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol C1 .25344(16) -.1196(5) .42144(11) .0412(6) Uani d . 1 C C2 .32078(19) -.0895(7) .47407(13) .0520(7) Uani d . 1 C H2 .3237 .0346 .4982 .062 Uiso calc R 1 H C3 .38262(19) -.2397(8) .49081(15) .0614(9) Uani d . 1 C H3 .4270 -.2171 .5261 .074 Uiso calc R 1 H C4 .37927(19) -.4229(8) .45567(16) .0605(9) Uani d . 1 C H4 .4210 -.5256 .4673 .073 Uiso calc R 1 H C5 .31380(19) -.4548(7) .40293(15) .0550(8) Uani d . 1 C H5 .3119 -.5780 .3786 .066 Uiso calc R 1 H C6 .25112(17) -.3042(6) .38619(13) .0467(7) Uani d . 1 C H6 .2069 -.3274 .3508 .056 Uiso calc R 1 H C .18659(18) .0482(6) .40716(11) .0488(7) Uani d . 1 C HA .1613 .0466 .4401 .059 Uiso calc R 1 H HB .2109 .1907 .4072 .059 Uiso calc R 1 H O .12362(11) .0172(4) .34845(8) .0448(5) Uani d . 1 O CP .14020(15) .1042(5) .29894(11) .0378(5) Uani d . 1 C OP .20673(11) .1712(5) .29888(9) .0502(5) Uani d . 1 O N1 .07163(12) .1100(4) .24917(10) .0368(5) Uani d . 1 N H1 .0282 .0436 .2509 .044 Uiso calc R 1 H C1A .07046(13) .2234(4) .19467(11) .0326(5) Uani d . 1 C C1B .02481(16) .1545(5) .13862(12) .0401(6) Uani d . 1 C C1G1 -.0201(2) -.0575(6) .13009(15) .0550(8) Uani d . 1 C H1G1 .0027 -.1478 .1658 .082 Uiso calc R 1 H H1G2 -.0150 -.1295 .0938 .082 Uiso calc R 1 H H1G3 -.0769 -.0312 .1252 .082 Uiso calc R 1 H C1G2 .0107(2) .2848(8) .08027(13) .0588(9) Uani d . 1 C H1G4 .0237 .4347 .0907 .088 Uiso calc R 1 H H1G5 -.0457 .2728 .0556 .088 Uiso calc R 1 H H1G6 .0450 .2303 .0571 .088 Uiso calc R 1 H C1P .10973(13) .4429(4) .20610(10) .0331(5) Uani d . 1 C O1P .09455(11) .5705(4) .24300(9) .0420(4) Uani d . 1 O N2 .15980(13) .4943(4) .17228(10) .0377(5) Uani d . 1 N H2A .1713 .3961 .1492 .045 Uiso calc R 1 H C2A .19466(15) .7091(5) .17368(12) .0386(6) Uani d . 1 C H2A1 .1589 .8129 .1857 .046 Uiso calc R 1 H C2B .28064(15) .7260(5) .22117(13) .0436(6) Uani d . 1 C H2B1 .3020 .8708 .2187 .052 Uiso calc R 1 H H2B2 .2758 .7084 .2625 .052 Uiso calc R 1 H C2G .34043(15) .5637(5) .21234(12) .0396(6) Uani d . 1 C C2D1 .35385(17) .3602(6) .23859(14) .0476(7) Uani d . 1 C H2D1 .3251 .3009 .2636 .057 Uiso calc R 1 H N2E1 .41537(15) .2569(5) .22285(13) .0530(6) Uani d . 1 N H2E1 .4328 .1275 .2340 .064 Uiso calc R 1 H C2E2 .44480(16) .3926(6) .18640(13) .0449(6) Uani d . 1 C C2D2 .39879(15) .5870(5) .17815(12) .0390(5) Uani d . 1 C C2Z2 .50991(18) .3654(7) .16256(15) .0543(8) Uani d . 1 C H2Z2 .5406 .2378 .1692 .065 Uiso calc R 1 H C2H2 .5271(2) .5339(8) .12881(16) .0627(10) Uani d . 1 C H2H2 .5702 .5196 .1122 .075 Uiso calc R 1 H C2Z3 .4814(2) .7276(8) .11871(16) .0609(9) Uani d . 1 C H2Z3 .4945 .8390 .0956 .073 Uiso calc R 1 H C2E3 .41698(18) .7539(6) .14292(14) .0488(7) Uani d . 1 C H2E3 .3863 .8814 .1357 .059 Uiso calc R 1 H C2P .19505(18) .7658(6) .10838(15) .0460(7) Uani d . 1 C O2P .18347(19) .6408(6) .06631(11) .0758(8) Uani d . 1 O O3T .21165(17) .9766(5) .10509(13) .0645(7) Uani d . 1 O C3T .2174(3) 1.0508(10) .0458(2) .0917(16) Uani d . 1 C H3T1 .2645 .9864 .0383 .137 Uiso calc R 1 H H3T2 .2226 1.2064 .0463 .137 Uiso calc R 1 H H3T3 .1690 1.0088 .0134 .137 Uiso calc R 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 C1 .0401(12) .0487(15) .0352(11) -.0046(13) .0122(10) .0028(12) C2 .0498(15) .0600(19) .0421(13) -.0093(16) .0081(11) -.0052(14) C3 .0416(15) .086(3) .0485(15) -.0040(18) .0021(11) .0019(18) C4 .0424(14) .078(2) .0601(16) .0105(17) .0146(13) .0085(19) C5 .0533(16) .0576(19) .0559(15) -.0002(16) .0193(12) -.0053(16) C6 .0419(13) .0532(17) .0419(12) -.0074(14) .0080(10) -.0017(13) C .0528(15) .0554(18) .0365(11) .0038(15) .0110(10) .0044(13) O .0418(9) .0535(12) .0392(8) .0018(9) .0124(7) .0120(9) CP .0349(11) .0405(14) .0392(11) .0038(11) .0131(9) .0061(10) OP .0330(9) .0658(14) .0498(10) -.0062(10) .0096(7) .0124(11) N1 .0296(9) .0423(12) .0390(10) -.0033(9) .0113(8) .0032(9) C1A .0261(9) .0348(13) .0379(11) .0018(9) .0114(8) .0008(10) C1B .0348(11) .0445(15) .0405(12) -.0017(11) .0109(9) -.0017(12) C1G1 .0498(16) .0515(18) .0573(15) -.0133(15) .0069(13) -.0080(15) C1G2 .0563(17) .078(2) .0357(12) -.0079(18) .0050(11) .0038(15) C1P .0273(10) .0367(13) .0346(10) .0031(10) .0084(8) .0027(10) O1P .0410(9) .0409(10) .0486(9) -.0014(9) .0205(7) -.0040(9) N2 .0350(10) .0375(12) .0457(10) -.0034(9) .0198(8) -.0001(9) C2A .0341(11) .0354(13) .0509(13) -.0023(10) .0199(10) .0028(11) C2B .0372(12) .0448(16) .0512(14) -.0054(12) .0172(10) -.0069(12) C2G .0336(11) .0383(13) .0450(12) -.0036(11) .0091(9) -.0002(11) C2D1 .0395(13) .0467(15) .0552(15) -.0026(13) .0126(11) .0095(14) N2E1 .0446(12) .0420(13) .0677(15) .0045(12) .0105(11) .0077(13) C2E2 .0354(12) .0451(16) .0499(13) -.0040(12) .0065(10) -.0057(13) C2D2 .0324(11) .0402(13) .0421(12) -.0038(11) .0081(9) -.0032(11) C2Z2 .0390(13) .061(2) .0604(17) .0062(15) .0118(12) -.0130(17) C2H2 .0469(15) .085(3) .0636(17) -.0051(19) .0275(14) -.019(2) C2Z3 .0548(17) .078(3) .0573(17) -.0141(19) .0281(14) .0033(19) C2E3 .0439(14) .0493(17) .0546(15) -.0054(14) .0169(11) .0040(14) C2P .0399(13) .0473(15) .0540(15) .0007(13) .0188(11) .0119(14) O2P .097(2) .080(2) .0558(13) -.0109(18) .0316(13) .0013(15) O3T .0718(15) .0503(14) .0840(16) .0009(13) .0425(13) .0228(13) C3T .102(3) .088(4) .106(3) .023(3) .063(3) .053(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0181 .0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N .0311 .0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0492 .0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C6 C1 C2 118.2(3) C6 C1 C 123.7(2) C2 C1 C 118.1(3) C3 C2 C1 121.1(3) C3 C2 H2 119.5 C1 C2 H2 119.5 C2 C3 C4 120.1(3) C2 C3 H3 119.9 C4 C3 H3 119.9 C3 C4 C5 119.8(4) C3 C4 H4 120.1 C5 C4 H4 120.1 C4 C5 C6 120.1(4) C4 C5 H5 119.9 C6 C5 H5 119.9 C1 C6 C5 120.7(3) C1 C6 H6 119.7 C5 C6 H6 119.7 O C C1 114.5(3) O C HA 108.6 C1 C HA 108.6 O C HB 108.6 C1 C HB 108.6 HA C HB 107.6 CP O C 115.0(2) OP CP O 125.0(2) OP CP N1 124.5(2) O CP N1 110.5(2) CP N1 C1A 121.0(2) CP N1 H1 119.5 C1A N1 H1 119.5 C1B C1A N1 121.3(2) C1B C1A C1P 123.5(2) N1 C1A C1P 114.2(2) C1A C1B C1G1 121.8(3) C1A C1B C1G2 123.7(3) C1G1 C1B C1G2 114.4(3) C1B C1G1 H1G1 109.5 C1B C1G1 H1G2 109.5 H1G1 C1G1 H1G2 109.5 C1B C1G1 H1G3 109.5 H1G1 C1G1 H1G3 109.5 H1G2 C1G1 H1G3 109.5 C1B C1G2 H1G4 109.5 C1B C1G2 H1G5 109.5 H1G4 C1G2 H1G5 109.5 C1B C1G2 H1G6 109.5 H1G4 C1G2 H1G6 109.5 H1G5 C1G2 H1G6 109.5 O1P C1P N2 122.6(3) O1P C1P C1A 121.0(2) N2 C1P C1A 116.4(2) C1P N2 C2A 122.1(2) C1P N2 H2A 118.9 C2A N2 H2A 118.9 N2 C2A C2P 108.2(2) N2 C2A C2B 112.3(2) C2P C2A C2B 112.0(2) N2 C2A H2A1 108.1 C2P C2A H2A1 108.1 C2B C2A H2A1 108.1 C2G C2B C2A 114.4(2) C2G C2B H2B1 108.6 C2A C2B H2B1 108.6 C2G C2B H2B2 108.6 C2A C2B H2B2 108.6 H2B1 C2B H2B2 107.6 C2D1 C2G C2D2 105.6(3) C2D1 C2G C2B 125.7(3) C2D2 C2G C2B 128.6(3) N2E1 C2D1 C2G 110.5(3) N2E1 C2D1 H2D1 124.7 C2G C2D1 H2D1 124.7 C2D1 N2E1 C2E2 109.2(3) C2D1 N2E1 H2E1 125.4 C2E2 N2E1 H2E1 125.4 N2E1 C2E2 C2Z2 130.2(3) N2E1 C2E2 C2D2 107.4(3) C2Z2 C2E2 C2D2 122.2(3) C2E3 C2D2 C2E2 119.0(3) C2E3 C2D2 C2G 133.8(3) C2E2 C2D2 C2G 107.2(3) C2H2 C2Z2 C2E2 117.4(3) C2H2 C2Z2 H2Z2 121.3 C2E2 C2Z2 H2Z2 121.3 C2Z2 C2H2 C2Z3 121.7(3) C2Z2 C2H2 H2H2 119.1 C2Z3 C2H2 H2H2 119.1 C2E3 C2Z3 C2H2 120.5(4) C2E3 C2Z3 H2Z3 119.7 C2H2 C2Z3 H2Z3 119.7 C2Z3 C2E3 C2D2 119.1(3) C2Z3 C2E3 H2E3 120.4 C2D2 C2E3 H2E3 120.4 O2P C2P O3T 124.6(3) O2P C2P C2A 125.4(3) O3T C2P C2A 110.0(3) C2P O3T C3T 115.7(4) O3T C3T H3T1 109.5 O3T C3T H3T2 109.5 H3T1 C3T H3T2 109.5 O3T C3T H3T3 109.5 H3T1 C3T H3T3 109.5 H3T2 C3T H3T3 109.5 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance C1 C6 1.380(5) C1 C2 1.395(4) C1 C 1.502(4) C2 C3 1.369(5) C2 H2 .93 C3 C4 1.369(6) C3 H3 .93 C4 C5 1.380(5) C4 H4 .93 C5 C6 1.381(5) C5 H5 .93 C6 H6 .93 C O 1.446(3) C HA .97 C HB .97 O CP 1.347(3) CP OP 1.214(3) CP N1 1.357(3) N1 C1A 1.411(3) N1 H1 .86 C1A C1B 1.339(3) C1A C1P 1.494(3) C1B C1G1 1.495(4) C1B C1G2 1.499(4) C1G1 H1G1 .96 C1G1 H1G2 .96 C1G1 H1G3 .96 C1G2 H1G4 .96 C1G2 H1G5 .96 C1G2 H1G6 .96 C1P O1P 1.229(3) C1P N2 1.351(3) N2 C2A 1.445(4) N2 H2A .86 C2A C2P 1.520(4) C2A C2B 1.540(4) C2A H2A1 .98 C2B C2G 1.487(4) C2B H2B1 .97 C2B H2B2 .97 C2G C2D1 1.373(5) C2G C2D2 1.447(4) C2D1 N2E1 1.368(4) C2D1 H2D1 .93 N2E1 C2E2 1.373(4) N2E1 H2E1 .86 C2E2 C2Z2 1.391(4) C2E2 C2D2 1.412(4) C2D2 C2E3 1.391(4) C2Z2 C2H2 1.371(6) C2Z2 H2Z2 .93 C2H2 C2Z3 1.405(6) C2H2 H2H2 .93 C2Z3 C2E3 1.384(4) C2Z3 H2Z3 .93 C2E3 H2E3 .93 C2P O2P 1.191(5) C2P O3T 1.333(4) O3T C3T 1.449(4) C3T H3T1 .96 C3T H3T2 .96 C3T H3T3 .96 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C6 C1 C2 C3 -.6(5) C C1 C2 C3 178.0(3) C1 C2 C3 C4 .2(5) C2 C3 C4 C5 .7(6) C3 C4 C5 C6 -1.1(5) C2 C1 C6 C5 .2(4) C C1 C6 C5 -178.3(3) C4 C5 C6 C1 .6(5) C6 C1 C O -7.9(4) C2 C1 C O 173.6(2) C1 C O CP -85.5(3) C O CP OP 12.5(4) C O CP N1 -166.4(2) OP CP N1 C1A -8.6(4) O CP N1 C1A 170.4(2) CP N1 C1A C1B 147.4(3) CP N1 C1A C1P -44.2(3) N1 C1A C1B C1G1 -6.6(4) C1P C1A C1B C1G1 -173.9(2) N1 C1A C1B C1G2 170.1(3) C1P C1A C1B C1G2 2.8(4) C1B C1A C1P O1P 121.8(3) N1 C1A C1P O1P -46.4(3) C1B C1A C1P N2 -56.0(3) N1 C1A C1P N2 135.9(2) O1P C1P N2 C2A -4.5(4) C1A C1P N2 C2A 173.1(2) C1P N2 C2A C2P -141.6(2) C1P N2 C2A C2B 94.3(3) N2 C2A C2B C2G 55.7(3) C2P C2A C2B C2G -66.3(3) C2A C2B C2G C2D1 -89.7(3) C2A C2B C2G C2D2 93.8(3) C2D2 C2G C2D1 N2E1 -.4(3) C2B C2G C2D1 N2E1 -177.5(3) C2G C2D1 N2E1 C2E2 .9(3) C2D1 N2E1 C2E2 C2Z2 175.6(3) C2D1 N2E1 C2E2 C2D2 -1.1(3) N2E1 C2E2 C2D2 C2E3 179.6(2) C2Z2 C2E2 C2D2 C2E3 2.6(4) N2E1 C2E2 C2D2 C2G .8(3) C2Z2 C2E2 C2D2 C2G -176.1(3) C2D1 C2G C2D2 C2E3 -178.8(3) C2B C2G C2D2 C2E3 -1.8(5) C2D1 C2G C2D2 C2E2 -.3(3) C2B C2G C2D2 C2E2 176.7(3) N2E1 C2E2 C2Z2 C2H2 -177.9(3) C2D2 C2E2 C2Z2 C2H2 -1.7(4) C2E2 C2Z2 C2H2 C2Z3 .3(5) C2Z2 C2H2 C2Z3 C2E3 .1(5) C2H2 C2Z3 C2E3 C2D2 .9(5) C2E2 C2D2 C2E3 C2Z3 -2.1(4) C2G C2D2 C2E3 C2Z3 176.2(3) N2 C2A C2P O2P -13.0(4) C2B C2A C2P O2P 111.3(4) N2 C2A C2P O3T 168.0(2) C2B C2A C2P O3T -67.8(3) O2P C2P O3T C3T -1.6(5) C2A C2P O3T C3T 177.4(3)