#------------------------------------------------------------------------------ #$Date: 2013-08-29 16:37:19 +0100 (Thu, 29 Aug 2013) $ #$Revision: 88064 $ #$URL: svn://www.crystallography.net/cod/cif/2/01/23/2012364.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2012364 loop_ _publ_author_name 'Xiong, Ya' 'Tong, Mingliang' 'An, Taicheng' 'Karlsson, Hans T.' _publ_section_title ;Aquabis(3,5-dimethyl-1H-pyrazole-\kN^2^)(malonato-\k^2^O,O')copper(II) dihydrate ; _journal_issue 12 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first 1385 _journal_page_last 1387 _journal_volume 57 _journal_year 2001 _chemical_formula_iupac '[Cu (C3 H2 O4) (C5 H8 N2)2 (H2 O)] , 2H2 O' _chemical_formula_moiety 'Cu C13 H20 O5 N4 , 2H2 O' _chemical_formula_sum 'C13 H24 Cu N4 O7' _chemical_formula_weight 411.90 _chemical_name_systematic ; Aquabis(3,5-dimethyl-1H-pyrazole-N^2^)(malonato-O,O')copper(II) dihydrate ; _space_group_IT_number 29 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2c -2ac' _symmetry_space_group_name_H-M 'P c a 21' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL97 _cell_angle_alpha 90 _cell_angle_beta 90 _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 24.000(7) _cell_length_b 8.531(3) _cell_length_c 9.369(2) _cell_measurement_reflns_used 25 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 15.0 _cell_measurement_theta_min 7.5 _cell_volume 1918.2(10) _computing_cell_refinement XSCANS _computing_data_collection 'XSCANS (Siemens, 1994)' _computing_data_reduction 'SHELXTL (Bruker, 1997)' _computing_molecular_graphics SHELXTL _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1990)' _diffrn_ambient_temperature 293(2) _diffrn_measurement_device_type 'Siemens P4' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength .71073 _diffrn_reflns_av_R_equivalents .033 _diffrn_reflns_av_sigmaI/netI .058 _diffrn_reflns_limit_h_max 32 _diffrn_reflns_limit_h_min -1 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 12 _diffrn_reflns_limit_l_min 0 _diffrn_reflns_number 2821 _diffrn_reflns_theta_max 29.01 _diffrn_reflns_theta_min 2.39 _diffrn_standards_decay_% 0 _diffrn_standards_interval_time 120 _diffrn_standards_number 2 _exptl_absorpt_coefficient_mu 1.178 _exptl_absorpt_correction_T_max .686 _exptl_absorpt_correction_T_min .523 _exptl_absorpt_correction_type empirical _exptl_absorpt_process_details 'via \y-scan (North et al., 1968)' _exptl_crystal_colour blue _exptl_crystal_density_diffrn 1.426 _exptl_crystal_density_meas 'not measured' _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 860 _exptl_crystal_size_max .46 _exptl_crystal_size_mid .36 _exptl_crystal_size_min .32 _refine_diff_density_max .36 _refine_diff_density_min -.43 _refine_ls_abs_structure_details 'Flack (1983)' _refine_ls_abs_structure_Flack -.01(3) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.030 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 226 _refine_ls_number_reflns 2705 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.029 _refine_ls_R_factor_all .111 _refine_ls_R_factor_gt .059 _refine_ls_shift/su_max <0.001 _refine_ls_shift/su_mean .000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.0781P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt .134 _refine_ls_wR_factor_ref .157 _reflns_number_gt 1654 _reflns_number_total 2705 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file da1196.cif _[local]_cod_data_source_block I _cod_database_code 2012364 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, z+1/2' 'x+1/2, -y, z' '-x+1/2, y, z+1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol Cu1 .38077(3) .39341(9) .66382(10) .0428(2) Uani d . 1 . . Cu O1 .3854(2) .2900(6) .4781(6) .0522(13) Uani d . 1 . . O O2 .4431(3) .1827(7) .3248(7) .0738(18) Uani d . 1 . . O O3 .4157(2) .5794(6) .5835(6) .0547(14) Uani d . 1 . . O O4 .4661(3) .7059(7) .4239(8) .078(2) Uani d . 1 . . O O1W .4538(2) .2349(6) .7258(7) .0667(17) Uani d . 1 . . O H1WA .4749 .2207 .8324 .080 Uiso d R 1 . . H H1WB .4436 .1630 .6729 .080 Uiso d R 1 . . H O2W .3742(3) -.0620(8) .4225(11) .093(3) Uani d . 1 . . O H2WA .3970 .0108 .4601 .080 Uiso d R 1 . . H H2WB .3798 -.1640 .4277 .080 Uiso d R 1 . . H O3W .5405(3) .0925(6) .1910(8) .070(2) Uani d . 1 . . O H3WA .5245 .1130 .1013 .080 Uiso d R 1 . . H H3WB .5084 .1276 .2390 .080 Uiso d R 1 . . H N1 .3144(2) .2557(7) .7012(6) .0493(16) Uani d . 1 . . N N2 .3171(2) .1039(7) .6535(10) .0563(16) Uani d . 1 . . N H2 .3568 .1020 .6212 .080 Uiso d R 1 . . H N3 .3830(2) .5051(7) .8518(7) .0460(14) Uani d . 1 . . N N4 .3898(2) .6638(7) .8566(8) .0480(15) Uani d . 1 . . N H4 .3971 .7250 .7766 .080 Uiso d R 1 . . H C1 .4496(3) .5828(9) .4771(9) .0497(18) Uani d . 1 . . C C2 .4716(3) .4283(8) .4167(10) .056(2) Uani d . 1 . . C H2A .5031 .3974 .4729 .080 Uiso d R 1 . . H H2B .4850 .4490 .3220 .080 Uiso d R 1 . . H C3 .4310(3) .2908(9) .4073(9) .0487(18) Uani d . 1 . . C C4 .2706(4) .0248(10) .7018(13) .078(3) Uani d . 1 . . C C5 .2381(4) .1267(10) .7758(12) .076(3) Uani d . 1 . . C H5A .2033 .1046 .8219 .080 Uiso d R 1 . . H C6 .2665(3) .2714(11) .7744(10) .061(2) Uani d . 1 . . C C7 .2641(5) -.1458(9) .659(2) .131(6) Uani d . 1 . . C H7A .2302 -.1871 .6986 .080 Uiso d R 1 . . H H7B .2629 -.1535 .5571 .080 Uiso d R 1 . . H H7C .2952 -.2047 .6949 .080 Uiso d R 1 . . H C8 .2469(4) .4246(10) .8346(13) .085(3) Uani d . 1 . . C H8A .2745 .5036 .8171 .080 Uiso d R 1 . . H H8B .2124 .4547 .7904 .080 Uiso d R 1 . . H H8C .2414 .4135 .9356 .080 Uiso d R 1 . . H C9 .3782(3) .4600(10) .9886(9) .0504(18) Uani d . 1 . . C C10 .3814(3) .5909(10) 1.0759(9) .061(2) Uani d . 1 . . C H10A .3776 .5921 1.1779 .080 Uiso d R 1 . . H C11 .3900(3) .7181(9) .9909(10) .055(2) Uani d . 1 . . C C12 .3709(4) .2921(11) 1.0263(11) .073(3) Uani d . 1 . . C H12A .3708 .2301 .9408 .080 Uiso d R 1 . . H H12B .4008 .2587 1.0871 .080 Uiso d R 1 . . H H12C .3361 .2792 1.0752 .080 Uiso d R 1 . . H C13 .3972(5) .8885(10) 1.0208(15) .089(3) Uani d . 1 . . C H13A .4030 .9446 .9332 .080 Uiso d R 1 . . H H13B .3645 .9278 1.0675 .080 Uiso d R 1 . . H H13C .4289 .9026 1.0820 .080 Uiso d R 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Cu1 .0377(4) .0479(4) .0430(4) -.0044(4) .0032(6) -.0039(6) O1 .042(3) .062(3) .052(3) -.004(2) -.001(3) -.007(3) O2 .075(4) .078(4) .068(4) .010(3) .009(4) -.033(4) O3 .062(4) .049(3) .053(3) -.004(2) .024(3) -.004(3) O4 .089(4) .060(4) .086(5) .008(3) .044(4) .015(4) O1W .061(3) .060(3) .080(4) .010(3) -.034(3) -.017(3) O2W .079(5) .066(4) .136(7) .015(3) -.028(5) -.008(5) O3W .079(4) .060(3) .071(6) .007(3) .029(4) .003(3) N1 .046(3) .059(4) .043(4) -.012(3) .004(3) .002(3) N2 .045(3) .059(3) .065(4) -.016(3) -.013(5) .005(4) N3 .041(3) .046(3) .050(4) -.003(3) .002(3) -.001(3) N4 .050(4) .041(3) .053(4) .001(3) .000(3) -.003(3) C1 .042(4) .057(5) .049(4) .006(3) .005(3) .006(4) C2 .040(4) .068(5) .059(5) .002(4) .019(4) -.001(4) C3 .042(4) .062(5) .042(4) .011(4) -.004(3) -.001(4) C4 .053(4) .070(5) .111(10) -.028(4) -.032(5) .018(6) C5 .055(5) .092(7) .083(7) -.015(5) .006(5) .029(6) C6 .046(4) .083(5) .053(5) -.005(4) .005(4) .003(5) C7 .101(9) .072(6) .218(16) -.043(6) -.077(13) .023(13) C8 .051(5) .122(8) .083(7) .007(6) .011(5) .001(7) C9 .049(4) .057(4) .045(4) -.007(4) -.005(4) -.002(4) C10 .057(5) .082(6) .045(4) -.003(5) -.003(4) -.007(4) C11 .056(5) .053(4) .055(5) -.002(4) .012(4) -.006(4) C12 .093(7) .069(6) .058(5) -.001(5) .001(5) .008(5) C13 .108(8) .065(6) .096(9) .007(6) .016(7) -.009(6) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Cu1 O3 . 1.946(5) ? Cu1 O1 . 1.954(6) ? Cu1 N3 . 2.003(6) ? Cu1 N1 . 2.010(6) ? Cu1 O1W . 2.288(5) ? O1 C3 . 1.278(9) ? O2 C3 . 1.238(9) ? O3 C1 . 1.287(9) ? O4 C1 . 1.229(9) ? N1 C6 . 1.346(9) ? N1 N2 . 1.372(9) ? N2 C4 . 1.380(10) ? N3 C9 . 1.343(10) ? N3 N4 . 1.365(9) ? N4 C11 . 1.341(11) ? C1 C2 . 1.528(10) ? C2 C3 . 1.527(11) ? C4 C5 . 1.359(14) ? C4 C7 . 1.517(14) ? C5 C6 . 1.410(11) ? C6 C8 . 1.499(12) ? C9 C10 . 1.386(12) ? C9 C12 . 1.486(13) ? C10 C11 . 1.361(12) ? C11 C13 . 1.491(12) ? loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0033 .0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N .0061 .0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0106 .0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cu Cu .3201 1.2651 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle O3 Cu1 O1 89.9(2) O3 Cu1 N3 86.6(2) O1 Cu1 N3 175.0(2) O3 Cu1 N1 152.3(3) O1 Cu1 N1 86.4(2) N3 Cu1 N1 98.4(2) O3 Cu1 O1W 104.5(2) O1 Cu1 O1W 85.1(2) N3 Cu1 O1W 92.2(2) N1 Cu1 O1W 102.5(2) C3 O1 Cu1 120.6(5) C1 O3 Cu1 126.2(5) C6 N1 N2 107.5(6) C6 N1 Cu1 135.1(6) N2 N1 Cu1 117.2(5) N1 N2 C4 108.4(7) C9 N3 N4 105.2(6) C9 N3 Cu1 134.5(5) N4 N3 Cu1 120.3(5) C11 N4 N3 112.0(7) O4 C1 O3 122.5(7) O4 C1 C2 118.4(7) O3 C1 C2 119.1(7) C3 C2 C1 117.6(6) O2 C3 O1 121.4(8) O2 C3 C2 117.3(7) O1 C3 C2 121.3(7) C5 C4 N2 108.6(7) C5 C4 C7 133.5(9) N2 C4 C7 117.8(10) C4 C5 C6 106.2(8) N1 C6 C5 109.3(8) N1 C6 C8 123.1(8) C5 C6 C8 127.5(8) N3 C9 C10 109.2(7) N3 C9 C12 120.8(7) C10 C9 C12 130.0(8) C11 C10 C9 107.7(8) N4 C11 C10 105.9(7) N4 C11 C13 120.9(9) C10 C11 C13 133.2(10) loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O1W H1WA O4 2_665 1.13 1.77 2.719(8) 139 O1W H1WB O3W 2_655 .83 2.22 2.815(7) 129 O2W H2WA O2 . .90 2.23 2.816(10) 122 O2W H2WA O1 . .90 2.40 3.059(9) 130 O2W H2WB O4 1_545 .88 2.35 2.965(9) 127 O3W H3WA O4 2_664 .94 2.28 3.041(10) 138 O3W H3WB O2 . .94 1.82 2.762(9) 175 N2 H2 O1 . 1.00 2.20 2.812(9) 118 N4 H4 O3 . .93 2.24 2.731(9) 112 _cod_database_fobs_code 2012364